Bring your single-cell data to life

Clone of the Bioconductor repository for the SingleR package.

Out-of-Core hybrid Apache Arrow/NumPy DataFrame for Python, ML, visualization and exploration of big tabular data at a billion rows per second 🚀

A TED videos search engine

Manipulate DESCRIPTION files

Single-cell Scalable Visualization and Analytics

Single RNA-seq data analysis with R (Finland, May, 2019)

Single-cell analysis in Python. Scales to >1M cells.

simpler single cell RNAseq data clustering

IGV Web App

Embeddable genomic visualization component based on the Integrative Genomics Viewer

Plot structural variant signals from many BAMs and CRAMs

An R package for generating attractive and distinctive colors.

Introduction to single-cell RNA-Seq analysis workshop

Scanpy use cases.

Analysis of single cell RNA-seq data course

ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

A python wrapper for Barnes-Hut tsne

R toolkit for single cell genomics

💉 Custom bio* stuff

Finder of Somatic Fusion Genes in RNA-seq data

create, manage, and upload track hubs for use in the UCSC genome browser

Web client for CIViC: Clinical Interpretations of Variants in Cancer

Bioconductor cheat sheet

bradner lab computation pipeline scripts

Development version of Easyfig

QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.