Materials and presentation for the 2022 ISB Microbiome course.
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Jun 13, 2024 - Jupyter Notebook
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16s-seq
Here are 13 public repositories matching this topic...
Materials and presentation for the 2023 ISB Microbiome course.
analysis systems-biology sequencing microbiome hacktoberfest metabolic-models microbial-ecology qiime2 pathogens 16s-seq
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Sep 25, 2024 - Jupyter Notebook
Quantitative metagenomic alignment and taxonomic exact-matching
bioinformatics metagenomics microbiome its-sequence shotgun-metagenomics 16s-seq exact-matching reduced-representation-sequencing strain-level-profiling compositional-correlation
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Dec 26, 2024 - Shell
MicrobiomeStat Tutorial Repository: This is a comprehensive resource for learning how to use the MicrobiomeStat package. It provides a step-by-step guide to effectively analyze complex microbiome data.
visualization analysis metagenomics data-analysis microbiome omics 16s metagenomes metagenomic-analysis microbiome-analysis omics-data-integration microbiome-data 16s-rrna microbiome-workflow metagenomic-pipeline omics-data microbiome-analysis-pipelines 16s-seq omics-data-analysis
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Dec 25, 2024
A tool to identify and extract the commonly used ITS folding motifs from a 16s-23s rRNA sequence.
bioinformatics help-wanted rna bacteria phylogeny phycology rrna rna-folding cyanobacteria 16s-rrna 23s 16s-seq rnafolding 16s-23s
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Jan 12, 2023 - Python
A quick and user-friendly pipeline to go from raw fastq data from Illumina (paired-end sequencing) to processed ASVs and Taxonomic data.
pipeline metagenomics illumina 16s microbiota illumina-sequencing phyloseq microbial-ecology dada2 16s-seq
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Jun 3, 2024 - R
Repository containing various RNA-seq, ChIP-seq, and 16S-seq analysis pipelines run through R
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Jul 6, 2021 - R
Python script designed to streamline bioinformatics analysis and facilitate data extraction from EZBioCloud
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Mar 16, 2024 - Python
Code associated with the following manuscript, currently in review: M.S. Fischer, N.J. Patel, P.J. De Lorimier, M.F. Traxler "Prescribed fire selects for a pyrophilous soil subcommunity in a northern California mixed conifer forest"
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Feb 22, 2023 - R
A R script for the study of the prokaryotic community of the sponge Dactylospongia metachromia
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Jan 29, 2023 - R
AU microbiome molecular exploratory analyses for NSW
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Jul 14, 2022 - R
VSEARCH pipeline for ASV inference of 16S seq data
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Jul 21, 2024 - Nextflow
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