Amplicon sequencing analysis workflow using DADA2 and QIIME2
Gemelli is a tool box for running Robust Aitchison PCA (RPCA), Joint Robust Aitchison PCA (Joint-RPCA), TEMPoral TEnsor Decomposition (TEMPTED), and Compositional Tensor Factorization (CTF) on sparse compositional omics datasets.
A fast and scalable phylogenetic tree viewer for microbiome data analysis
A Python package for microbiome sequencing analysis with QIIME 2
Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat
Materials and presentation for the 2022 ISB Microbiome course.
Materials and presentation for the 2023 ISB Microbiome course.
Snakemake pipeline for 16S, 18S and ITS metagenomics using qiime2
The importance of converting relative to absolute abundance in the context of microbial ecology: Introducing the user-friendly DspikeIn R package
QIIME2 worklflow. From raw data to a feature table.
Qiime2 Artifact eXtractor
Effect size calculations for microbiome data
Some of the analytical processes and tools we use to provide rigorous and actionable results to our clients.
Qiime2 and DADA2 are one of the latest bioinformatics tools used in 16S RNA analysis. The current Qiime2 and DADA2 pipelines support End to End 16S RNA analysis, among other analyses.
This is a workflow for 16S rRNA analysis.
q2-boots: bootstrapped and rarefaction-based alpha and beta diversity analyses 🥾
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