A phylogenetic tree consensus and comparison program for Mac OS 9.

Efficient computations of higher-order phylogenetic moments and derivatives

Species tree estimation from gene trees via quartets

Fetch informations from Open Tree of Life API and send it to standard output.

Species tree estimation from gene trees via weighted quartets

Visualization of large trees and associated metadata

G-PhoCS is a software package for inferring ancestral population sizes, population divergence times, and migration rates from individual genome sequences.

GEne-functional Evolutionary model using SufficiEncy

Easy-to-use C++ library for the live tracking of lineage and coalescence trees in individual-based forward-in-time simulations.

A framework for simulation of substitution histories under site- and time-heterogeneous mutation-selection models (and related approaches)

Fast Estimation of Diversification Rates

Implementation of the Phylogenetic Liklihood Function for the AMD Versal architecture (FPGA and AI processors on same SoC).

Phylogenetic analysis software

Phylogenetic Diversity calculations, simulations, and Discovery.

hms cutie beagle pie

BayesCode, a Bayesian framework for phylogenetic comparative methods and phylogenetic codon models

Tools for analyzing and comparing SARS-CoV-2 phylogenies

Find bubbles in the Colored de Bruijn Graph to reconstruct phylogenetic trees

A specialized surrogate function for phylogenetic likelihoods.