Efficient computations of higher-order phylogenetic moments and derivatives

Fetch informations from Open Tree of Life API and send it to standard output.

Species tree estimation from gene trees via weighted quartets

Visualization of large trees and associated metadata

G-PhoCS is a software package for inferring ancestral population sizes, population divergence times, and migration rates from individual genome sequences.

A framework for simulation of substitution histories under site- and time-heterogeneous mutation-selection models (and related approaches)

Fast Estimation of Diversification Rates

Implementation of the Phylogenetic Liklihood Function for the AMD Versal architecture (FPGA and AI processors on same SoC).

A specialized surrogate function for phylogenetic likelihoods.

Easy-to-use C++ library for the live tracking of lineage and coalescence trees in individual-based forward-in-time simulations.

GEne-functional Evolutionary model using SufficiEncy

hms cutie beagle pie

A phylogenetic tree consensus and comparison program for Mac OS 9.

pruner: Implementing the Felsenstein's Tree Pruning algorithm

Species tree estimation from gene trees via quartets

Phylogenetic analysis software

Phylogenetic Diversity calculations, simulations, and Discovery.

A Bayesian Phylo-HMM for B cell receptor sequence analysis

BayesCode, a Bayesian framework for phylogenetic comparative methods and phylogenetic codon models