A DSL for data-driven computational pipelines
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Updated
Oct 20, 2024 - Groovy
A DSL for data-driven computational pipelines
Singularity has been renamed to Apptainer as part of us moving the project to the Linux Foundation. This repo has been persisted as a snapshot right before the changes.
Scripts to synchronize Singularity images to a CVMFS repository.
Apptainer: Application containers for Linux
Molecular dynamics and Monte Carlo soft matter simulation on GPUs.
Simplify HPC and Batch workloads on Azure
📦 🐳 Dockerfiles and documentation on tools for public health bioinformatics
Protein-Ligand Interaction Profiler - Analyze and visualize non-covalent protein-ligand interactions in PDB files according to 📝 Adasme et al. (2021), https://doi.org/10.1093/nar/gkab294
Container-native task automation engine.
server for storage and management of singularity images
HIPAA & GDPR compliant ready parse-server with postgres/mongo, parse-hipaa-dashboard. Compatible with ParseCareKit
A docker image for converting docker images to singularity images.
streamlined singularity python client (spython) for singularity
The Singularity implementation of the Kubernetes Container Runtime Interface
Connectome Mapper 3 is a BIDS App that implements full anatomical, diffusion, resting/state functional MRI, and recently EEG processing pipelines, from raw T1 / DWI / BOLD , and preprocessed EEG data to multi-resolution brain parcellation with corresponding connection matrices.
An example GitHub Action (CI) to build a Singularity container
Singularity implementation of k8s operator for interacting with SLURM.
Port Forwarding Utility
Add a description, image, and links to the singularity topic page so that developers can more easily learn about it.
To associate your repository with the singularity topic, visit your repo's landing page and select "manage topics."