Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments

A scalable, efficient, cross-platform (Linux/macOS) and easy-to-use workflow engine in pure Python.

Workflow Description Language - Specification and Implementations

📦 Package manager for REAPER

Workflow Description Language developer tools & local runner

Long read production pipelines

Access share reviewed code & Jupyter Notebooks for use on the UK Biobank (UKBB) Research Application Platform. Includes resources from DNAnexus webinars, online trainings and workshops.

An app store for scientific workflows, tools, notebooks, and services

A collection of reusable WDL tasks. Category:Other

The WES API is a standard way to run and manage portable workflows.

Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integration Center) to process data. Tibanna supports CWL/WDL (w/ docker), Snakemake (w/ conda) and custom Docker/shell command.

Configure workflow/pipeline tests using yaml files.

CLI for interacting with Cromwell servers

[Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows

Rich IDE support for Workflow Description Language

Workflow Description Language compiler for the DNAnexus platform

An opinionated Cromwell orchestration manager.

Bioinformatics workflows developed for and used on the St. Jude Cloud project.

A BioWDL pipeline for processing RNA-seq data, starting with FASTQ files to produce expression measures and VCFs. Category:Multi-Sample

WDL and CWL compiler for the DNAnexus platform