Marco Suárez
Universidad Nacional Autónoma de México, Instituto de Ecologia, Graduate Student
- Evolutionary Biology, Biogeography, Systematics (Taxonomy), Herpetology, Phylogeography, Population Genetics, and 13 moreBiological invasions, Phylogeny/phylogenetics, Conservation Genetics, Reptile, Instituto De Ecología, Ecology, Environmental Niche, Beta diversity, Genetic Diversity, Environmental niche modelling, Niche Modelling, Niche Divergence, and Biologyedit
Research Interests:
Land use changes are threatening the maintenance of biodiversity. Genetic diversity is one of the main indicators of biological diversity and is highly important as it shapes the capability of populations to respond to environmental... more
Land use changes are threatening the maintenance of biodiversity. Genetic diversity is one of the main indicators of biological diversity and is highly important as it shapes the capability of populations to respond to environmental changes. We studied eleven populations of Pseudoeurycea robertsi, a micro-endemic and critically endangered species from the Nevado de Toluca Volcano, a mountain that is part of the Trans-Mexican Volcanic Belt, Mexico. We sequenced the mitochondrial cytochrome b gene from 71 individuals and genotyped 9 microsatellites from 150 individuals. Our results based on the cytochrome b showed two divergent lineages, with moderate levels of genetic diversity and a recently historical demographic expansion. Microsatellite-based results indicated low levels of heterozygosity for all populations and few alleles per locus, as compared with other mole salamander species. We identified two genetically differentiated subpopulations with a significant level of genetic structure. These results provide fundamental data for the development of management plans and conservation efforts for this critically endangered species.
Research Interests:
AIM: A fundamental problem in evolutionary biology has been understanding the role of environmental factors in the process of genetic diversification. Our main goal was to define the ecological niches of two Boa imperator lineages, in... more
AIM: A fundamental problem in evolutionary biology has been understanding the role of environmental factors in the process of genetic diversification. Our main goal was to define the ecological niches of two Boa imperator lineages, in order to assess if environmental drivers could be associated with the divergence and genetic variation between them. We quantified the environmental niches at two evolutionary and geographical scales: regional‐historical (lineages) and local‐ecological (individuals within lineages). LOCATION: Neotropical region of Mexico and mainland Central America. METHODS: We performed ecological niche modelling (ENM) methods by defining the accessibility area per B. imperator lineage, based on their geographic ranges, to analyse ecological and geographical distributions. We applied statistics of niche overlap, interpredictability, equivalency and similarity. We tested the niche‐centrality hypothesis within lineages by evaluating the relationship between genetic metrics and the distance to ecological and geographical centroids. RESULTS: Temperature seasonality, precipitation and elevation were the most informative environmental variables (GARP and MaxEnt). Ecological interprediction and niche similarity and equivalency tests revealed a dynamic process of niche evolution, where the niches of the two lineages are not identical but still showed a signature of niche conservatism. Correlation analyses between genetic variability and structure showed negative correlations with distance to ecological and geographical centroids at the local level. MAIN CONCLUSIONS: Our results support the role of environmental variables as significant and highly accurate predictors of lineage distribution and divergence, in agreement with the boa's evolutionary history. The niches of the two lineages are not identical, sharing environmental niche space but not all ecological variables. A historically more recent signal of genetic structure within lineages was evident, where the quality of the ecological niche further influences genetic distribution patterns within populations. Our results illustrate how ENM may validate evolutionary patterns from a biogeographical and phylogeographical framework.
Research Interests:
Aim To evaluate the genetic diversity and phylogeographical structure of Boa constrictor imperator, in order to identify the key historical events responsible for its current distribution and diversity. Location The Neotropical region of... more
Aim To evaluate the genetic diversity and phylogeographical structure of Boa constrictor imperator, in order to identify the key historical events responsible for its current distribution and diversity. Location The Neotropical region of Mexico and mainland Central America. Methods We used data from the mitochondrial cytochrome b gene, nuclear ornithine decarboxylase intron and microsatellites to perform spatial genetic analyses, and coalescence methods to infer phylogeographical structure, divergence times and historical demography. Results Cytochrome b results revealed two main reciprocally monophyletic lineages, one along the Mexican Pacific coast and another along the Gulf of Mexico, Yucatan Peninsula and Central America, diverging c. 5.2 Ma. Both lineages are subdivided into haplogroups and show steady historical growth and a more recent population expansion. High genetic diversity was observed for both cytochrome b (h = 0.944) and microsatellites (HNei = 0.810–0.900). Main conclusions We demonstrate deep phylogeographical structure with two reciprocally monophyletic lineages and five genetic clusters in Mexico and Central America. Our results suggest that several geographical barriers (including the Trans-Mexican Volcanic Belt and the Motagua–Polochic–Jocotan faults) and ecological features generated this structure. We report genetic diversity values for the boa at a regional scale and suggest that the two lineages may be considered distinct species.
Research Interests:
Research Interests:
The runner bean is a legume species from Mesoamerica closely related to common bean (Phaseolus vulgaris). It is a perennial species, but it is usually cultivated in small-scale agriculture as an annual crop for its dry seeds and edible... more
The runner bean is a legume species from Mesoamerica closely related to common bean (Phaseolus vulgaris). It is a perennial species, but it is usually cultivated in small-scale agriculture as an annual crop for its dry seeds and edible immature pods. Unlike the common bean, P. coccineus has received little attention from a genetic standpoint. In this work we aim to (1) provide information about the domestication history and domestication events of P. coccineus; (2) examine the distribution and level of genetic diversity in wild and cultivated Mexican populations of this species; and, (3) identify candidate loci to natural and artificial selection. For this, we generated genotyping by sequencing data (42,548 SNPs) from 242 individuals of P. coccineus and the domesticated forms of the closely related species P. vulgaris (20) and P. dumosus (35). Eight genetic clusters were detected, of which half corresponds to wild populations and the rest to domesticated plants. The cultivated popul...
Research Interests:
Land use changes are threatening the maintenance of biodiversity. Genetic diversity is one of the main indicators of biological diversity and is highly important as it shapes the capability of populations to respond to environmental... more
Land use changes are threatening the maintenance of biodiversity. Genetic diversity is one of the main indicators of biological diversity and is highly important as it shapes the capability of populations to respond to environmental changes. We studied eleven populations of Pseudoeurycea robertsi, a micro-endemic and critically endangered species from the Nevado de Toluca Volcano, a mountain that is part of the Trans-Mexican Volcanic Belt, Mexico. We sequenced the mitochondrial cytochrome b gene from 71 individuals and genotyped 9 microsatellites from 150 individuals. Our results based on the cytochrome b showed two divergent lineages, with moderate levels of genetic diversity and a recently historical demographic expansion. Microsatellite-based results indicated low levels of heterozygosity for all populations and few alleles per locus, as compared with other mole salamander species. We identified two genetically differentiated subpopulations with a significant level of genetic structure. These results provide fundamental data for the development of management plans and conservation efforts for this critically endangered species.
Research Interests:
Interspecific hybridization can lead to adaptation and speciation, especially in the context of recent radiations. The emblematic Crocodylus (true crocodiles) is the most broadly distributed, ecologically diverse, and species-rich... more
Interspecific hybridization can lead to adaptation and speciation, especially in the context of recent radiations. The emblematic Crocodylus (true crocodiles) is the most broadly distributed, ecologically diverse, and species-rich crocodylian genus. Nonetheless, their within-species evolutionary processes are poorly resolved mainly due to their potential for hybridization. Notably, the evolutionary outcomes when hybridization is ancient and involves long-lived species, like crocodiles, remain largely unexplored. Here, we evaluate the genomic admixture between the American (Crocodylus acutus) and the Morelet's (Crocodylus moreletii) species, and demonstrate that this hybridization system challenges the definition of species boundaries and poses a triple conservation conundrum: what has been recognized as C. acutus is actually two distinct species, therefore its taxonomic reassessment is needed; we identified two evolutionary distinct hybrids lineages, which are genetically discernible from the parental species; the remaining C. moreletii populations evidence its likely extinction as a species and/or evolution via hybridization. Hence, the crocodiles' distinct species and hybrids lineages warrant recognition and need urgent conservation efforts.
Research Interests:
The runner bean is a legume species from Mesoamerica closely related to common bean (Phaseolus vulgaris). It is a perennial species, but it is usually cultivated in small-scale agriculture as an annual crop for its dry seeds and edible... more
The runner bean is a legume species from Mesoamerica closely related to common bean (Phaseolus vulgaris). It is a perennial species, but it is usually cultivated in small-scale agriculture as an annual crop for its dry seeds and edible immature pods. Unlike the common bean, P. coccineus has received little attention from a genetic standpoint. In this work we aim to (1) provide information about the domestication history and domestication events of P. coccineus; (2) examine the distribution and level of genetic diversity in wild and cultivated Mexican populations of this species; and, (3) identify candidate loci to natural and artificial selection. For this, we generated genotyping by sequencing data (42,548 SNPs) from 242 individuals of P. coccineus and the domesticated forms of the closely related species P. vulgaris (20) and P. dumosus (35). Eight genetic clusters were detected, of which half corresponds to wild populations and the rest to domesticated plants. The cultivated populations conform a monophyletic clade, suggesting that only one domestication event occurred in Mexico, and that it took place around populations of the Trans-Mexican Volcanic Belt. No difference between wild and domesticated levels of genetic diversity was detected and effective population sizes are relatively high, supporting a weak genetic bottleneck during domestication. Most populations presented an excess of heterozygotes, probably due to inbreeding depression. One population of P. coccineus subsp. striatus had the greatest excess and seems to be genetically isolated despite being geographically close to other wild populations. Contrasting with previous studies, we did not find evidence of recent gene flow between wild and cultivated populations. Based on outlier detection methods, we identified 24 domestication-related SNPs, 13 related to cultivar diversification and eight under natural selection. Few of these SNPs fell within annotated loci, but the annotated domestication-related SNPs are highly expressed in flowers and pods. Our results contribute to the understanding of the domestication history of P. coccineus, and highlight how the genetic signatures of domestication can be substantially different between closely related species.
Aim A fundamental problem in evolutionary biology has been understanding the role of environmental factors in the process of genetic diversification. Our main goal was to define the ecological niches of two Boa imperator lineages, in... more
Aim A fundamental problem in evolutionary biology has been understanding the role of environmental factors in the process of genetic diversification. Our main goal was to define the ecological niches of two Boa imperator lineages, in order to assess if environmental drivers could be associated with the divergence and genetic variation between them. We quantified the environmental niches at two evolutionary and geographical scales: regional-historical (lineages) and local-ecological (individuals within lineages). Location Neotropical region of Mexico and mainland Central America. Methods We performed ecological niche modelling (ENM) methods by defining the accessibility area per B. imperator lineage, based on their geographic ranges, to analyse ecological and geographical distributions. We applied statistics of niche overlap, interpredictability, equivalency and similarity. We tested the niche-centrality hypothesis within lineages by evaluating the relationship between genetic metrics and the distance to ecological and geographical centroids. Results Temperature seasonality, precipitation and elevation were the most informative environmental variables (GARP and MaxEnt). Ecological interpre-diction and niche similarity and equivalency tests revealed a dynamic process of niche evolution, where the niches of the two lineages are not identical but still showed a signature of niche conservatism. Correlation analyses between genetic variability and structure showed negative correlations with distance to ecological and geographical centroids at the local level. Main conclusions Our results support the role of environmental variables as significant and highly accurate predictors of lineage distribution and divergence, in agreement with the boa's evolutionary history. The niches of the two lineages are not identical, sharing environmental niche space but not all ecological variables. A historically more recent signal of genetic structure within lineages was evident, where the quality of the ecological niche further influences genetic distribution patterns within populations. Our results illustrate how ENM may validate evolutionary patterns from a biogeographical and phylogeographical framework.