Journal of Heredity 2012:103(4):515–522
doi:10.1093/jhered/ess013
Advance Access publication May 4, 2012
© The American Genetic Association. 2012. All rights reserved.
For permissions, please email: journals.permissions@oup.com.
Introgressive Hybridization between
Color Morphs in a Population of
Cichlid Fishes Twelve Years after
Human-Induced Secondary Admixis
From the Zoological Institute, University of Basel, Vesalgasse 1, 4051 Basel, Switzerland (Egger and Salzburger); the Institute
of Zoology, University of Graz, Universitätsplatz 2, 8010 Graz, Austria (Sefc and Sturmbauer); and the Lake Tanganyika
Research Unit, Department of Fisheries, PO Box 55, Mpulungu, Zambia (Makasa).
Address correspondence to Walter Salzburger at the address above, or e-mail: walter.salzburger@unibas.ch.
Abstract
In the extremely species-rich haplochromine cichlid fishes of the East African Great Lakes, prezygotic isolation between
closely related species is often maintained by color-assortative mating. In 1998, local fisherman working for the ornamental
fish trade released different color morphs of the cichlid genus Tropheus into a small harbor basin in the southern part of Lake
Tanganyika. This artificial amalgamation of color morphs provides a unique possibility to study mating patterns in cichlids in
a natural environment over time. In a precursor study, we analyzed genotypes and phenotypes of almost 500 individuals
sampled between 1999 and 2001 and uncovered a marked degree of color-assortative mating, which depended on the level
of color pattern dissimilarity between morphs. Twelve years after introduction of nonindigenous morphs, we again sampled
Tropheus individuals from the harbor basin and an adjacent, originally pure population and analyzed phenotypes (coloration)
and genotypes (mitochondrial control region and 9 microsatellite loci) to assess the current status of the admixed
population. Principal component analyses of color score data and population assignment tests demonstrate an increasing
level of introgressive hybridization between morphs but also some ongoing color-assortative mating within morphs. The
observed mating pattern might have been influenced by fluctuating environmental conditions such as periodic algal blooms
or increased sedimentation causing turbid conditions in an otherwise clear lake.
Key words: cichlid species flock, Tropheus moorii, faunal translocation, assortative mating, population assignment
The formation of reproductive isolation constitutes a crucial
step in organismal diversification. Reproductive isolation can
evolve under a variety of mechanisms, which are broadly
classified into prezygotic and postzygotic isolating barriers,
both reducing gene flow between species (Coyne and Orr
2004). Several species have been shown to exhibit strong
assortative mating preferences in the absence of postzygotic
isolation (e.g., McMillan et al. 1997; Seehausen et al. 1997;
Jiggins et al. 2004), corroborating the notion that barriers to
fertilization and therein premating isolation due to courtship
traits and associated preferences are likely to be common
causes of reproductive isolation (for a review, see Ritchie 2007).
The extremely species-rich haplochromine cichlid fishes
of the East African Great Lakes are one prominent example
where prezygotic isolation by direct behavioral mating
preferences has been demonstrated to be the main
reproductive isolating barrier among closely related species
(see, e.g., Salzburger 2009; Seehausen 2009). Although the
role and relative importance of visual, olfactory, and acoustic
cues used in haplochromine mate choice is still unclear, there
is strong evidence for the dominant role of visual cues in
a sympatric species pair from Lake Victoria (Maan et al. 2004;
Stelkens et al. 2008). Intra- and interspecific variation in male
nuptial coloration and corresponding female preferences are
widespread in haplochromine cichlids (Seehausen 2000). The
most impressive example for intraspecific color pattern
variation is the genus Tropheus from Lake Tanganyika, with
currently over 100 described color morphs distributed mostly
allopatrically in the shallow, rocky habitat of the lake (Schupke
2003). Sexual selection was proposed to have contributed to
the evolution of the numerous color morphs, although
Tropheus lacks some of the features that are generally
associated with sexual selection such as sexual dimorphism
and polygamy (Egger et al. 2006). Phylogeographic studies
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BERND EGGER, KRISTINA M. SEFC , LAWRENCE MAKASA, CHRISTIAN STURMBAUER, AND WALTER SALZBURGER
Journal of Heredity 2012: 103(4)
516
Figure 1. Morphological classification of the studied
specimens of Tropheus moorii in the small harbor bay in
Mpulungu. (A) Map of the southern part of Lake Tanganyika,
East Africa, illustrating the human-induced secondary admixis
of several nonindigenous color morphs of T. moorii. (B) PCA
based on 12 landmarks related to coloration (see Salzburger
et al. 2006). Several individuals (1–11; see also Figure 3) fall
outside the main morphological clusters light olive, dark olive,
orange, striped red, and red or show a discrepancy between
genotype and phenotype and are thus likely to represent
hybrids.
Materials and Methods
Sampling was carried out in March 2010 in the small harbor
bay in front of the Fisheries Department, Mpulungu,
Zambia. Additional samples were collected from an adjacent
population (‘‘St Georges’’; ;50 m west of the admixed
population), which was already used as an originally
undisturbed adjacent population by Salzburger et al.
(2006). Fish were collected by local divers using gill nets.
Each specimen was measured, weighted, and photographed
in a standardized way. Finally, a fin clip was taken and stored
in ethanol for later DNA extraction before fishes were
released back into their habitat.
In order to be able to compare the results between the
different sampling years, we used the exactly same color score
as Salzburger et al. (2006) to quantify phenotypic differences
between individuals/morphs. Only adult individuals (larger
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revealed a rather complex evolutionary history of the genus:
recurrent major and minor lake level fluctuations were the
likely cause of population displacement, secondary contact,
and introgression between differentiated morphs (Baric et al.
2003; Sturmbauer et al. 2005; Egger et al. 2007). Under such
a scenario, the level of introgression between morphs is
probably influenced by the degree of reproductive isolation
during phases of secondary contact because the presence and
absence of assortative mating preferences underlie reproductive isolation and random mixing, respectively (Bateson 1983).
Disassortative preferences, on the other hand, may
even accelerate the fusion of gene pools (Rosenfield and
Kodric-Brown 2003).
In southern Lake Tanganyika, an artificial amalgamation of
several differently colored Tropheus morphs created a situation
that is similar to secondary contact among allopatric populations
after a lake level drop. The admixture event dates back to 1998,
when local fishermen collected about 300 adult Tropheus from
several sites in the southern part of the lake (the exact locations
are not known) in order to export the fishes for the aquarium
trade. The fishermen were refused export permits, however. But
instead of returning the fishes to their original habitats, as
instructed by the local authorities, the catch was released in
a small harbor basin of approximately 200 m2 in size in front of
the Fisheries Department in Mpulungu, Zambia. In our
precursor study (Salzburger et al. 2006), we collected samples
of the admixed population in 3 consecutive years following the
release of nonindigenous morphs (1999–2001) and, using both
molecular and morphological techniques, examined the phenotypic and genetic structure of the population in order to assess
mating patterns between morphs. Principal component analysis
(PCA) based on color score data unraveled 5 distinct phenotype
classes, namely the indigenous morph (‘‘light olive’’) and the
nonindigenous morphs ‘‘dark olive’’ (translocated from the
Zambian east coast), ‘‘red,’’ ‘‘red striped,’’ and ‘‘orange’’ (all 3
translocated from the shoreline northwest of the Lufubu estuary;
see Figure 1). Paternity analysis and a population assignment test
of juveniles born after the admixis event revealed a high degree
of color-assortative mating, with approximately 70% of the
offspring being derived from within-color morph matings.
Moreover, reproductive isolation was the strongest between the
most distinct morphs (olive and reddish morphs), which also
represent different mitochondrial haplotype lineages
(Sturmbauer et al. 2005), whereas introgression between
phenotypically and genetically more similar morphs, that is,
between light and dark olive or within the reddish morphs
occurred more frequently. In line with this, laboratory female
mate choice experiments using several Tropheus morphs revealed
that the level of reproductive isolation increased with increasing
color pattern dissimilarity of morphs (Egger et al. 2008, 2010).
More than a decade after the translocation of nonindigenous morphs, we again sampled Tropheus individuals
from the harbor basin to assess the current status of the
admixed population and to obtain a more long-term
perspective on secondary admixis in Tropheus. Analysis of
phenotypic and genotypic data was used to uncover if colorassortative mating was maintained or broke down over time.
Egger et al. • Secondary Admixis and Hybridization in a Cichlid Fish
likelihood analysis was carried out in PAUP*4.0b10
(Swofford 2002) to construct an unrooted mitochondrial
haplotype genealogy according to the strategy described in
Salzburger et al. (2011).
Microsatellite scoring data were rounded to valid integers
using the software TANDEM (Matschiner and Salzburger
2009). A population assignment test was carried out with
Structure 2.1 (Pritchard et al. 2000). As reference for ‘‘pure’’
individuals, we included samples from the years 1999–2001
that grouped in one of the genotype classes A, B, C, or D
based on the population assignment test and to the
corresponding phenotype classes light olive, dark olive, and
red/striped red based on the PCA in Salzburger et al. (2006).
These samples were then used to test the genetic assignment
of individuals collected in 2001 and 2010. We ran Markov
chain Monte Carlo simulations with 500 000 replications
(burn in 5 50 000; admixture model with prior population
information; correlated allele frequencies) for K (number of
genetic clusters) 5 4 (based on the samples light-olive, darkolive, red/striped-red, and the light-olive morphs from the
adjacent population). The simulations were also run with K 5
2 (based on the samples red/striped-red and all dark-olive and
light-olive individuals) and K 5 3 (one time based on the
samples light olive, dark olive, red/striped-red, without the
light-olive morphs from the adjacent population and one time
based on the samples light olive, including the light-olive
individuals from the adjacent population, dark olive, and red/
striped red) to check for stability of the genotypic assignment.
Results
In the PCA, specimens from the admixed population from
sampling years 1999–2001 were, just as in our precursor study,
split into 5 distinct phenotype groups (light olive, dark olive,
orange, red, and striped red, see Figure 1B). All individuals
from the adjacent population sampled between 1999 and 2001
were placed in the light-olive phenotype group (see Salzburger
et al. 2006). The majority of specimens collected from the
admixed population in 2010 also grouped within these discrete
phenotype groups. Several individuals of the 2010 sampling
were placed outside these clusters, though (Figure 1B). The
same was the case for specimens sampled from the adjacent
population in 2010 (see Figure 1B). Importantly, most
‘‘outliers’’ displayed color patterns intermediate between red
and olive phenotypes, suggesting a hybrid origin. The changes
in morph frequency over the sampling years in both the
admixed and the adjacent population are shown in Figure 2.
Intermediate phenotypes were not detected in 1999 but
showed up in low numbers in 2000 (0.9%) and increased
dramatically in abundance (from 1.5% to 19%) between 2001
and 2010. In the adjacent population, no intermediate
phenotypes were identified from 1999 to 2001 but were
present in 2010 with a frequency of 3.5%.
Sequencing of the mitochondrial control region revealed
the presence of 59 haplotypes. Of these, 34 were found
exclusively in specimens collected between 1999 and 2001,
16 were shared between individuals collected in 2010 and in
517
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than 60 mm in total length) were included in this analysis as
juveniles often have distinct color patterns. Twelve features
related to coloration were used for the color score: overall
body color (red/light olive/dark olive/orange), central body
color (red/yellow/dark/orange), color of eyelid (red/light/
dark/yellow), eye ring (blue/dark/light), operculum (red/
dark/light/blue), operculum edge (red/light/dark/yellow/
orange/blue), dorsal fin (dark red/light/dark/light blue/
light red), base of dorsal fin (dark red/light/dark/orange/
blue/light red), base of anal fin (dark red/light/dark/
orange/blue/light red), base of pectoral fin (dark red/light/
dark/orange/blue/light red), stripe/dot pattern (uniform/
stripe/dot), and dorsal fin pattern (uniform/striped). The
color score data available from adult individuals collected
from 1999 to 2001 were, together with the new samples
from 2010, translated into a binary data matrix and
subjected to a PCA with R (v. 2.8.1, R Development Core
Team 2008).
Total DNA was extracted from fin clips preserved in ethanol
applying a proteinase K digestion followed by sodium chloride
extraction and ethanol precipitation (Bruford et al. 1998). The
106 individuals sampled in 2010 (44 individuals from the
admixed and 62 from the adjacent population) were genotyped
at 9 microsatellite loci: Ppun5, Ppun7, Ppun21 (Taylor et al.
2002), UNH130 (Lee and Kocher 1996), Pzeb3 (van Oppen
et al. 1997), HchiST06, HchiST38, HchiST68, and HchiST94
(Maeda et al. 2009). Because Salzburger et al. (2006) had
only analyzed 5 microsatellite markers, we also re-genotyped
individuals sampled in 2001 plus a set of genetically and
morphologically distinct individuals for the STRUCTURE
analysis (see below). Sample sizes differed in the PCA on color
traits and in the microsatellite analyses and were as follows: PCA
analysis (admixed/adjacent): 1999, N 5 78/23; 2000, N 5 106/
23; 2001, N 5 66/32; 2010, N 5 38/57; microsatellite analysis
(admixed/adjacent): 2001, N 5 73/39; 2010, N 5 44/62;
reference: 1999, N 5 35, 2000, N 5 9, 2001, N 5 24.
Fragment size calling was carried out on an ABI 3130xl
genetic analyzer (Applied Biosystems) in comparison to the
LIZ 500(250) (Applied Biosystems) internal size standard.
Genotypes were determined manually using Peak Scanner
(v. 1.0; Applied Biosystems). As in Salzburger et al. (2006), we
also determined the DNA sequence of a 363-bp segment of
the mitochondrial control region for the samples from 2010
using published primers (Kocher et al. 1989; Salzburger et al.
2002). The PCR fragments of the control region were purified
using ExoSAP-IT (USB), directly sequenced with the BigDye
sequencing chemistry (Applied Biosystems), and analyzed on
an ABI 3130xl genetic analyzer (Applied Biosystems). The
DNA sequences are available at GenBank under the accession
numbers JQ736031-JQ736134.
Mitochondrial DNA sequences were aligned using C O D ONC O DE A LIG NE R (version 3.5; CodonCode Corporation)
and combined with the sequences of Salzburger et al. (2006)
resulting in a total of 561 sequences from 4 sampling years
(1999 [N 5 113], 2000 [N 5 194], 2001 [N 5 150], and
2010 [N 5 104]). These sequences were collapsed into
haplotypes using the software C O L L A P S E (v. 1.2, Posada
2006). Based on the resulting 59 haplotypes, a maximum
Journal of Heredity 2012: 103(4)
striped-red morphotypes to the red/striped-red genotype
class demonstrates the power of the assignment test (see
Figure 3 and Supplementary Figure 1).
Discussion
the earlier years and 9 haplotypes were exclusively found in
specimen sampled in 2010. Six out of these haplotypes were
singletons, that is, they were found in a single specimen only.
In the haplotype genealogy based on a maximum likelihood
analysis (data not shown) all red, red-striped, and orange
specimens from 1999 were placed in one and all light- and
dark-olive individuals from 1999 in the other clade. As of
2000, introgression occurred in both clades (year 2000: one
light-olive and one dark-olive specimen grouped in the ‘‘red
clade,’’ one striped-red individual grouped in the ‘‘olive clade’’;
year 2001: one light-olive specimen grouped in the red clade,
one striped-red individual grouped in the olive clade; year
2010: one light-olive and two phenotypically intermediate
individual grouped in the red clade, seven phenotypically
intermediate individuals grouped in the olive clade).
The microsatellite-based population assignment test
(Pritchard et al. 2000) for individuals from the years 2001
and 2010 is shown in Figure 3 and Supplementary Figure 1.
For both the admixed and the adjacent population sampled
in 2001 and in 2010, only few individuals could be assigned
to a particular phenotype group and to the ‘‘corresponding’’
genotype class with a probability Pa of more than 0.75. This
clearly indicates a high frequency of hybridization between
morphs. The genetic assignment of individuals was
consistent between iterations of structure runs and between
runs using different values for K (K 5 2 and K 5 3, data not
shown). Moreover, the correct assignment of the red and
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Figure 2. Bar plots representing the frequency of morphs
(based on the PCA) and intermediate phenotypes in the
admixed (A) and in the adjacent (B) population for the
sampling years 1999, 2000, 2001, and 2010.
Our morphological and genetic analyses of an admixed
population of Tropheus moorii 12 years after the translocation
of nonindigenous morphs not only provide evidence for
extensive hybridization but also for ongoing color-assortative
mating between different Tropheus morphs, both in the
admixed and in the adjacent population. The PCA
uncovered several phenotypically distinct individuals in the
2010 sample, which displayed color patterns intermediate
between the red and olive morphs (Figure 1). Based on
photographs of fish sampled in 2010, it seems that many
more individuals (at least 11) displayed phenotypes deviating
from the originally released color morphs, that is, they did
not resemble naturally occurring color morphs of T. moorii.
However, our relatively conservative color scoring, which is
restricted to certain body areas only, cannot discriminate
these obvious hybrids from the naturally occurring morphs.
Intermediate phenotypes were not detected in the population samples from 1999 to 2001 (Salzburger et al. 2006;
Figure 2), although a reevaluation of the mitochondrial
DNA data suggests rare hybridization events between red
and olive morphs already soon after admixis. Moreover, the
new population assignment test based on microsatellite data
showed extensive hybridization already in 2001 with only
very few individuals being assigned to both a particular
genotype class and the corresponding phenotype group
(Supplementary Figure 1). Thus, our new and more refined
analyses contradict our precursor study (Salzburger et al.
2006), in that hybridization among morphs happened more
frequently than previously concluded. Note, however, that
our new analysis is based on more microsatellite markers
and a more robust and extensive set of reference specimens
for the pure color morphs, which increased the sensitivity.
Importantly, we again identified one genetically and
phenotypically pure red individual in the 2010 sample of
the admixed population, confirming ongoing color-assortative
mating within the red morph. At the same time, our new data
show that hybridization, also between distinct allopatric color
morphs, increased over time in the admixed and in the
adjacent population. This means that the adjacent population,
which served as reference for indigenous fish, by now is
strongly affected by the dispersal of nonindigenous morphs
and hybrids (Figure 3).
Changes in the frequency of morphs in the admixed and
in the adjacent population can influence the rate of
hybridization. Backcrossing of hybrids into one of the
parental morphs provides a route for gene flow between
morphs, such that the rate of homogenization between
morphs will increase steadily even if F1 hybrids are
produced at very low rates. The reduction in the frequency
of certain morphs can have diverse consequences, either
a reduction of hybridization rates because of reduced
Egger et al. • Secondary Admixis and Hybridization in a Cichlid Fish
encounters with rare morphs or an increase in hybridization
rates resulting from the limited availability of homotypic
partners for the rare morph.
Reproductive isolation in Tropheus appears to correlate
with the level of color pattern dissimilarity between morphs
with the red morph being the most distinct among the
studied morphs (Salzburger et al. 2006; Egger et al. 2008,
2010). In previous mate choice experiments, females of
some morphs discriminated against males of distinct
morphs, whereas no assortative preferences were detected
among similar morphs (Egger et al. 2010). Importantly,
females of the resident morph did not prefer their own
morph over a distinct alternative choice (Egger et al. 2010;
Sefc KM, Hermann CM, Steinwender B, unpublished data),
which might also have facilitated hybridization between
resident and introduced morphs in the admixed harbor
population.
Although little is known about the relative importance of
different mate choice cues in Tropheus, intraspecific
communication is likely mediated by visual signals (at least
in parts; see Wickler 1969; Nelissen 1976; Sturmbauer
and Dallinger 1995). Such signals can be influenced by
the physical properties of the ambient light spectra and the
degree of attenuation, absorption, and scattering of the
transmission medium (Lythgoe 1979; Reimchen 1989).
Environmental changes altering water clarity, such as
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Figure 3. Results of the population assignment test based on 9 microsatellite markers. (A–C) Structure plot showing the
individual assignment of specimens collected in 2010 in the admixed (A) and the adjacent population (B) with respect to
a reference set of pure individuals (C) from different sampling years. The color coding refers to the genotype classes identified by
Salzburger et al. (2006). (D) Photographs of pure specimens and 11 putative hybrid specimens. The letters indicate the phenotypic
assignment to a specific phenotype class: L, light olive; D, dark olive; R, red; H, hybrid; j, juvenile.
Journal of Heredity 2012: 103(4)
520
only the red morphs persisted, whereas the other morphs
are—at least genetically—largely admixed by now (Figure 3).
Apparently, there are also many more intermediate
phenotypes in the admixed population in 2010, although
a more detailed phenotypic analysis, which probably would
reveal intermediate types other than the extreme cases
depicted in Figure 3, is hampered by the much lower quality
of the nondigital photographs from 1999 to 2001. Besides
eliciting reinforcement of reproductive isolation and the
fusion of populations/species (introgressive), hybridization
can influence evolution by producing new ‘‘transgressive’’
morphs (see Rieseberg et al. 1999). In Tropheus, a tree-based
method for identifying hybrid taxa (Egger et al. 2007)
already indicated that distinct morphs interbreed upon
secondary contact and that some new morphs originated
from hybridization between existing morphs.
The role of hybridization as a mechanism promoting
diversification and speciation in the animal kingdom has
been supported by empirical studies in recent years (see
Seehausen 2004). Reproductive isolation in cichlid fish
species flocks is mostly due to prezygotic isolation by direct
behavioral mating preferences and hybrids are often viable
and fertile (Stelkens, Young, et al. 2009). Thus, the diversity
of complex species assemblages might have at least in part
originated via hybridization of ancestral lineages (Salzburger
et al. 2002; Joyce et al. 2011), and it has been shown that
phenotypic novelty can be produced by transgressive
segregation in cichlids (Seehausen 2004; Stelkens, Schmid,
et al. 2009). Just as in other cichlid lineages, the evolutionary
history of the genus Tropheus appears to have been greatly
affected by environmental changes such as lake level
fluctuations, enabling secondary contact between previously
allopatric morphs, and possibly natural eutrophication or
sedimentation. Our study shows that despite strong behavioral mating preferences, introgressive hybridization between
Tropheus morphs can be extensive and might have contributed
to the evolution of the numerous color morphs.
Supplementary Material
Supplementary Figure
Figure1 can
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www.jhered.oxfordjournals.org/.
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Funding
Austrian Science Fund (FWF, Erwin Schrödinger Fellowship
to B.E.; grants P20883-B16 and P20994-B03 to K.M.S. and
C.S.); the European Research Council (starting grant
‘‘INTERGENADAPT’’ to W.S.); the Swiss National Science
Foundation (grant 3100A0_122458).
Acknowledgments
We would like to thank the divers around A. Musonda for catching the fish,
the staff at the Lake Tanganyika Research Unit, Department of Fisheries,
Mpulungu, for technical assistance, and M. Dittmann and L. Schild for help
during fieldwork. This research was conducted under the Memorandum of
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eutrophication or sedimentation, can thus have profound
effects on fish communication, sexual selection, and mating
systems (Seehausen et al. 1997; Järvenpää and Lindström
2004). Excess sedimentation caused by deforestation leading
to reduced light penetration has also been reported from
several inshore sites of Lake Tanganyika (particularly in the
North). There, high sediment loads are often correlated with
low fish diversity (Cohen et al. 1993; Alin et al. 1999).
Temporarily turbid water conditions may also occur naturally
and on the basis of seasonal climatic cycles leading to, for
example, increased sediment inflow caused by rainfall or
periodic algal blooms caused by upwelling of nutrient-rich
water (Plisnier et al. 1999; Langenberg et al. 2002; Bergamino
et al. 2007). Such periods of higher turbidity might also lead to
a temporary breakdown of reproductive barriers between
Tropheus color morphs. It is unclear, however, whether excess
sedimentation or eutrophication-induced production could
have affected our study populations by increasing the
spontaneous level of hybridization. Compared to the northern
part of Lake Tanganyika, sites at the southern tip of the
Zambian shoreline are actually regarded as low disturbance
sites (Cohen et al. 1993), although (to our knowledge) no
detailed data are available on eutrophication levels in the
harbor basin in Mpulungu from the last 12 years. At the time
of our sampling, the water in Mpulungu harbor was clear
(secchi disc measurement revealed visibility to the maximum
depth of the harbor basin of 2.70 m).
Concerning the evolutionary relevance, the humanmediated amalgamation of distinctly colored Tropheus
morphs resembles the natural situation during major low
stands of the water level in Lake Tanganyika, leading to the
admixis of formerly isolated populations (Sturmbauer 1998;
Kornfield and Smith 2000; Sturmbauer et al. 2001). Clearly,
if reproductive barriers (e.g., through assortative mating) are
strong enough, secondarily admixed populations will show
no (or very low levels) of gene flow (i.e., hybridization). This
seems to be the case between the red morph and the
remaining morphs, as a more or less stable assemblage of
genetically and morphologically pure red specimens persisted until more than 10 years in the Mpulungu harbor
basin (albeit at low frequency since the very beginning of
this ‘‘experiment’’). Based on the observation that assortative mating is strongest between the red morphs, which are
also genetically the most distinct, and the remaining types,
we had previously suggested that reproductive isolation in
Tropheus is correlated with the time since divergence (in
allopatry) (Salzburger et al. 2006). This was corroborated by
more recent work demonstrating that, in some areas of Lake
Tanganyika, distinct color morphs of Tropheus can coexist
without introgression—although, in these cases, the morphs
are genetically more distinct than the ones in the admixed
harbor population (Egger et al. 2007; Herler et al. 2010).
On the other hand, if populations that come into
secondary contact are not yet completely reproductively
isolated, (introgressive) hybridization will lead to the fusion
of morphs. This way, a lake level drop may result in
‘‘speciation reversal’’ (sensu Seehausen et al. 2008) in the
admixture zones. In the Mpulungu harbor, it appears that
Egger et al. • Secondary Admixis and Hybridization in a Cichlid Fish
Understanding between the University of Zambia in Lusaka, the Department
of Fisheries, Republic of Zambia, and the Universities of Graz and Basel.
sexual selection on a speciation trait, male coloration, in the Lake Victoria
cichlid Pundamilia nyererei. Proc R Soc Lond B Biol Sci. 271:2445–2452.
References
Maeda K, Takeda M, Kamiya K, Aibara M, Mzighani SI, Nishida M, Mizoiri S,
Sato T, Terai Y, Okada N, et al. 2009. Population structure of two closely
related pelagic cichlids in Lake Victoria, Haplochromis pyrrhocephalus and
H. laparograma. Gene. 441:67–73.
Alin S, Cohen A, Bills R, Gashagaza MM, Michel E, Tiercelin JJ, Martens K,
Coveliers P, Mboko S, West K, et al. 1999. Effects of landscape disturbance
on animal communities in Lake Tanganyika, East Africa. Conserv Biol.
13:1017–1033.
Baric S, Salzburger W, Sturmbauer C. 2003. Phylogeography and evolution
of the Tanganyikan cichlid genus Tropheus based upon mitochondrial DNA
sequences. J Mol Evol. 56:54–68.
Bateson P. 1983. Mate choice. New York: Cambridge University Press.
Bruford MW, Hanotte O, Brookfield JFY, Burke T. 1998. Multi-locus and
single-locus DNA fingerprinting. In: Molecular analysis of populations,
Hozel AR. editor. New York: Oxford University Press. p. 283–336.
McMillan WO, Jiggins CD, Mallet J. 1997. What initiates speciation in
passion-vine butterflies? Proc Natl Acad Sci USA. 94:8628–8633.
Nelissen M. 1976. Contribution to the ethology of Tropheus moorii Boulenger
(Pisces, Cichlidae) and a discussion of the significance of its colour pattern.
Rev Zool Afr. 90:17–29.
Plisnier PD, Chitamwebwa D, Mwape L, Tshibangu K, Langenberg V,
Coenen E. 1999. Limnological annual cycle inferred from physical–
chemical fluctuations at three stations of Lake Tanganyika. Hydrobiologia.
407:45–58.
Posada D. 2006. Collapse: describing haplotypes from sequence alignments.
Available from: http://darwin.uvigo.es/software/collapse.html
Cohen AS, Bills R, Cocquyt CZ, Caljon AG. 1993. The impact of sediment
pollution on biodiversity in Lake Tanganyika. Conserv Biol. 7:667–677.
Pritchard JK, Stephens M, Donnelly P. 2000. Inference of population
structure using multilocus genotype data. Genetics. 155:945–959.
Coyne JA, Orr HA. 2004. Speciation. Sunderland (MA): Sinauer Associates.
R Development Core Team. 2008. R: A language and environment for
statistical computing. Vienna, Austria: R Foundation for Statistical
Computing. Available from http://www.R-project.org
Egger B, Koblmüller S, Sturmbauer C, Sefc KM. 2007. Nuclear and
mitochondrial data reveal different evolutionary processes in the Lake
Tanganyika cichlid genus Tropheus. BMC Evol Biol. 7:137.
Egger B, Mattersdorfer K, Sefc KM. 2010. Variable discrimination and
asymmetric preferences in laboratory tests of reproductive isolation
between cichlid colour morphs. J Evol Biol. 23:433–439.
Egger B, Obermüller B, Eigner E, Sturmbauer C, Sefc KM. 2008.
Assortative mating between allopatric colour morphs of the endemic Lake
Tanganyika cichlid species Tropheus moorii. Hydrobiologia. 615:37–48.
Egger B, Obermüller B, Phiri H, Sturmbauer C, Sefc KM. 2006. Monogamy
in the maternally mouthbrooding Lake Tanganyika cichlid fish Tropheus
moorii. Proc R Soc Lond B Biol Sci. 273:1797–1802.
Herler J, Kerschbaumer M, Mitteroecker P, Postl L, Sturmbauer C. 2010.
Sexual dimorphism and population divergence in the Lake Tanganyika
cichlid fish genus Tropheus. Front Zool. 7:4.
Järvenpää M, Lindström K. 2004. Water turbidity by algal blooms causes
mating system breakdown in a shallow-water fish, the sand goby
Pomatoschistus minutus. Proc R Soc Lond B Biol Sci. 271:2361–2365.
Jiggins CD, Estrada C, Rodrigues A. 2004. Mimicry and the evolution of
pre-mating isolation in Heliconius melpomene. J Evol Biol. 17:680–691.
Joyce DA, Lunt DH, Genner MJ, Turner GF, Bills R, Seehausen O. 2011.
Repeated colonization and hybridization in Lake Malawi cichlids. Curr Biol.
21:108–109.
Kocher TD, Thomas WK, Meyer A, Edwards SV, Paabo S, Villablanca FX,
Wilson A. 1989. Dynamics of mitochondrial DNA evolution in animals:
amplification and sequencing with conserved primers. Proc Natl Acad Sci
USA. 86:6196–6200.
Kornfield I, Smith PF. 2000. African cichlid fishes: model systems for
evolutionary biology. Annu Rev Ecol Syst. 31:163–196.
Langenberg V, Mwape LW, Tschibangu K, Tumba JM, Koelmans AA,
Roijackers R, Salonen K, Sarvala J, Mölsä H. 2002. Comparison of thermal
stratification, light attenuation and chlorophyll a dynamics between the ends
of Lake Tanganyika. Aquat Ecosyst Health. 5:255–265.
Lee WJ, Kocher TD. 1996. Microsatellite DNA markers for genetic
mapping in Oreochromis niloticus. J Fish Biol. 49:169–171.
Lythgoe JN. 1979. The ecology of vision. Oxford: Clarendon Press.
Maan ME, Seehausen O, Söderberg L, Johnson L, Ripmeester EAP, Mrosso
HDJ, Taylor MI, Van Dooren TJM, van Alphen JJM. 2004. Intraspecific
Reimchen TE. 1989. Shell colour ontogeny and tubeworm mimicry in
a marine gastropod Littorina mariae. Biol J Linn Soc. 36:97–109.
Rieseberg LH, Archer MA, Wayne RK. 1999. Transgressive segregation,
adaptation and speciation. Heredity. 83:363–372.
Ritchie MG. 2007. Sexual selection and speciation. Annu Rev Ecol Evol
Syst. 38:79–102.
Rosenfield J, Kodric-Brown A. 2003. Sexual selection promotes hybridization between Pecos pupfish, Cyprinodon pecosensis and sheepshead minnow,
C. variegatus. J Evol Biol. 16:595–606.
Salzburger W. 2009. The interaction of sexually and naturally selected traits
in the adaptive radiations of cichlid fishes. Mol Ecol. 18:169–185.
Salzburger W, Ewing GB, von Haeseler A. 2011. The performance of
phylogenetic algorithms in estimating haplotype genealogies. Mol Ecol.
20:1952–1963.
Salzburger W, Meyer A, Baric S, Verheyen E, Sturmbauer C. 2002.
Phylogeny of the Lake Tanganyika cichlid species flock and its relationships
to Central and East African haplochromine cichlid fish faunas. Syst Biol.
51:113–135.
Salzburger W, Niederstätter H, Brandstätter A, Berger B, Parson W, Snoeks J,
Sturmbauer C. 2006. Colour-assortative mating among populations of
Tropheus moorii, a cichlid fish from Lake Tanganyika, East Africa. Proc R Soc
Lond B Biol Sci. 273:257–266.
Schupke P. 2003. African cichlids II: Tanganyika I: Tropheus. Rodgau
(Germany): Aqualog, A.C. S. Gmbh.
Seehausen O. 2000. Explosive speciation rates and unusual species richness in
Haplochromine cichlid fishes: effects of sexual selection. Adv Ecol Res.
31:237–274.
Seehausen O. 2004. Hybridization and adaptive radiation. Trends Ecol
Evol. 19:198–207.
Seehausen O. 2009. Progressive levels of trait divergence along a ’speciation
transect’ in the Lake Victoria cichlid fish Pundamilia. In: Butlin R, Bridle J,
Schluter D, editors. Ecological reviews: speciation and patterns of diversity.
Cambridge: Cambridge University Press. p. 155–176.
Seehausen O, Takimoto R, Roy D, Jokela J. 2008. Speciation reversal and
biodiversity dynamics with hybridization in changing environments. Mol
Ecol. 17:30–44.
521
Downloaded from https://academic.oup.com/jhered/article/103/4/515/1025433 by guest on 22 July 2022
Bergamino N, Loiselle SA, Cozar A, Dattilo AM, Bracchini L, Rossi C. 2007.
Examining the dynamics of phytoplankton biomass in Lake Tanganyika
using empirical orthogonal functions. Ecol Model. 204:156–162.
Matschiner M, Salzburger W. 2009. TANDEM: integrating automated allele
binning into genetics and genomics workflows. Bioinformatics. 25:1982–1983.
Journal of Heredity 2012: 103(4)
Seehausen O, Van Alphen JJM, Witte F. 1997. Cichlid fish diversity threatened
by eutrophication that curbs sexual selection. Science. 277:1808–1811.
Stelkens RB, Pierotti MER, Joyce DA, Smith AM, van der Sluijs I,
Seehausen O. 2008. Disruptive sexual selection on male nuptial coloration
in an experimental hybrid population of cichlid fish. Philos Trans R Soc
Lond B Biol Sci. 363:2861–2870.
Stelkens RB, Schmid C, Selz O, Seehausen O. 2009. Phenotypic novelty in
experimental hybrids is predicted by the genetic distance between species of
cichlid fish. BMC Evol Biol. 9:283.
Stelkens RB, Young KA, Seehausen O. 2009. The accumulation of
reproductive incompatibilities in African cichlid fish. Evolution. 64:617–633.
Sturmbauer C. 1998. Explosive speciation in cichlid fishes of the African
Great Lakes: a dynamic model of adaptive radiation. J Fish Biol. 53:18–36.
Sturmbauer C, Dallinger R. 1995. Diurnal variation of spacing and foraging
behavior in Tropheus moorii (Cichlidae) in Lake Tanganyika. Neth J Zool.
45:386–401.
522
Swofford DL. 2002. PAUP*. Phylogenetic analysis using parsimony (*and
other methods). Sunderland, MA: Sinauer Associates.
Taylor MI, Meardon F, Turner G, Seehausen O, Mrosso HDJ, Rico C.
2002. Characterization of tetranucleotide microsatellite loci in a Lake
Victorian, haplochromine cichlid fish: a Pundamilia pundamilia x Pundamilia
nyererei hybrid. Mol Ecol Notes. 2:443–445.
van Oppen MJH, Rico C, Deutsch JC, Turner GF, Hewitt GM. 1997.
Isolation and characterization of microsatellite loci in the cichlid fish
Pseudotropheus zebra. Mol Ecol. 6:387–388.
Wickler W. 1969. Zur Soziologie des Brabantbuntbarsches, Tropheus moorei
(Pisces, Cichlidae). Z Tierpsychol. 26:967–987.
Received October 6, 2011; Revised February 4, 2012;
Accepted February 11, 2012
Corresponding Editor: Robert Wayne
Downloaded from https://academic.oup.com/jhered/article/103/4/515/1025433 by guest on 22 July 2022
Sturmbauer C, Baric S, Salzburger W, Rüber L, Verheyen E. 2001. Lake
level fluctuations synchronize genetic divergence of cichlid fishes in African
lakes. Mol Biol Evol. 18:144–154.
Sturmbauer C, Koblmüller S, Sefc KM, Duftner N. 2005. Phylogeographic
history of the genus Tropheus, a lineage of rock-dwelling cichlid fishes
endemic to Lake Tanganyika. Hydrobiologia. 542:335–366.