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Downloaded from jmg.bmj.com on April 17, 2014 - Published by group.bmj.com JMG Online First, published on April 4, 2014 as 10.1136/jmedgenet-2014-102360 Methods ORIGINAL ARTICLE A blinded international study on the reliability of genetic testing for GGGGCC-repeat expansions in C9orf72 reveals marked differences in results among 14 laboratories Chizuru Akimoto,1 Alexander E Volk,2 Marka van Blitterswijk,3 Marleen Van den Broeck,4,5 Claire S Leblond,6 Serge Lumbroso,7 William Camu,8 Birgit Neitzel,9 Osamu Onodera,10 Wouter van Rheenen,11 Susana Pinto,12 Markus Weber,13 Bradley Smith,14 Melanie Proven,15 Kevin Talbot,16 Pamela Keagle,17 Alessandra Chesi,18 Antonia Ratti,19,20 Julie van der Zee,4,5 Helena Alstermark,1 Anna Birve,1 Daniela Calini,19,20 Angelica Nordin,1 Daniela C Tradowsky,2 Walter Just,2 Hussein Daoud,6 Sabrina Angerbauer,9 Mariely DeJesus-Hernandez,3 Takuya Konno,10 Anjali Lloyd-Jani,15 Mamede de Carvalho,12 Kevin Mouzat,7 John E Landers,17 Jan H Veldink,11 Vincenzo Silani,19,20 Aaron D Gitler,18 Christopher E Shaw,14 Guy A Rouleau,6 Leonard H van den Berg,11 Christine Van Broeckhoven,4,5 Rosa Rademakers, Peter M Andersen,1,21 Christian Kubisch2 ▸ Additional material is published online only. To view please visit the journal online (http://dx.doi.org/10.1136/ jmedgenet-2014-102360). For numbered affiliations see end of article. Correspondence to Dr Peter M Andersen, Department of Pharmacology and Clinical Neuroscience, Umeå University, Umeå SE-90185, Sweden; peter. andersen@neuro.umu.se CA and AEV wish it to be known that, in their opinion, the first two authors should be regarded as joint first authors. PMA and CK wish it to be known that, in their opinion, the last two authors should be regarded as joint last authors. Received 13 February 2014 Accepted 10 March 2014 To cite: Akimoto C, Volk AE, van Blitterswijk M, et al. J Med Genet Published Online First: [ please include Day Month Year] doi:10.1136/jmedgenet2014-102360 ABSTRACT Background The GGGGCC-repeat expansion in C9orf72 is the most frequent mutation found in patients with amyotrophic lateral sclerosis (ALS) and frontotemporal dementia (FTD). Most of the studies on C9orf72 have relied on repeat-primed PCR (RP-PCR) methods for detection of the expansions. To investigate the inherent limitations of this technique, we compared methods and results of 14 laboratories. Methods The 14 laboratories genotyped DNA from 78 individuals (diagnosed with ALS or FTD) in a blinded fashion. Eleven laboratories used a combination of amplicon-length analysis and RP-PCR, whereas three laboratories used RP-PCR alone; Southern blotting techniques were used as a reference. Results Using PCR-based techniques, 5 of the 14 laboratories got results in full accordance with the Southern blotting results. Only 50 of the 78 DNA samples got the same genotype result in all 14 laboratories. There was a high degree of false positive and false negative results, and at least one sample could not be genotyped at all in 9 of the 14 laboratories. The mean sensitivity of a combination of amplicon-length analysis and RP-PCR was 95.0% (73.9–100%), and the mean specificity was 98.0% (87.5–100%). Overall, a sensitivity and specificity of more than 95% was observed in only seven laboratories. Conclusions Because of the wide range seen in genotyping results, we recommend using a combination of amplicon-length analysis and RP-PCR as a minimum in a research setting. We propose that Southern blotting techniques should be the gold standard, and be made obligatory in a clinical diagnostic setting. Akimoto C, et al. J Med Genet author 2014;0:1–6.(or doi:10.1136/jmedgenet-2014-102360 Copyright Article their employer) 2014. INTRODUCTION In 2011, an expansion of a GGGGCC-repeat in the gene ‘Chromosome 9 open reading frame 72’ (C9orf72) was identified as a cause of amyotrophic lateral sclerosis (ALS, OMIM614260) and frontotemporal dementia (FTD, OMIM105550).1 2 The following 3-years series of publications reported that a large proportion of ALS (1–30%) and FTD (6–30%) Caucasian patients carry a C9orf72 repeat expansion,3–5 making this mutation the most common known genetic cause of ALS and FTD, and one of the most frequent genetic alterations causing neurodegenerative diseases overall. In one of the initial reports, a combination of ampliconlength analysis, repeat-primed PCR (RP-PCR) assays, and Southern blot (SB) was used for detection and calculation of the repeat numbers.1 SB is regarded as the gold standard for detecting large polynucleotide repeat expansions,6 but it is relatively expensive, cumbersome and time consuming, and up to 10 mg of high-quality DNA is needed for a single analysis. It is not surprising, therefore, that in nearly all studies published during 2011–2013, the much simpler, cheaper and faster-to-perform PCR-based screening methods were used.2 By using amplification primers flanking the repeat motif, the amplicon-length analysis allows determination of the exact repeat numbers of alleles with up to 30 repeats, and thus, is able to exclude a pathological repeat expansion if two different alleles in the wildtype range are detected. In RP-PCR, at least two primers are used: one primer that hybridises outside the repeat motif, and one primer that binds to the repeat motif itself. In most protocols a third Produced by BMJ Publishing Group Ltd under licence. 1 Downloaded from jmg.bmj.com on April 17, 2014 - Published by group.bmj.com Methods primer is applied that hybridises to an oligonucleotide tail of the repeat motif binding primer, also leading to the term tripletprimed PCR.7 In this RP-PCR, a large GGGGCC-repeat expansion typically gives rise to a ‘saw-tooth’ or ‘stutter’ pattern, which has been taken as evidence for the presence of a disease-associated expansion.1 2 Since the first reports of this mutation, a large number of studies have reported on the epidemiology, clinical, psychological and imaging features, and postmortem neuropathology of C9orf72 repeat expansion carriers with ALS, FTD, Alzheimer disease, Parkinson’s disease, and other neurodegenerative diseases, as well as in healthy individuals.8 In many of these studies, the C9orf72-genotype was assessed using RP-PCR alone without a confirmatory SB analysis. Only recently, large-scale studies using SB analysis have been published.9 10 PCR-based C9orf72 screening is also used in clinical diagnostic testing of affected individuals, as well as in predictive testing of healthy individuals at-risk of ALS and FTD. The aim of this study is to determine the sensitivity and specificity of different C9orf72 genotyping methods, and to establish recommendations for molecular testing of the GGGGCC-repeat expansion in C9orf72. Fourteen experienced genetic laboratories participated in this study, and all laboratories were requested to perform RP-PCR with or without amplicon-length analyses on the same 78 samples. MATERIALS AND METHODS Study design At the initiative of the ALS research laboratory at Umeå University, Sweden, 20 laboratories with extensive experience in performing DNA analysis for neurodegenerative diseases, including ALS and FTD, were invited to participate in this study. Eleven research laboratories and two diagnostic laboratories agreed to participate, and including Umeå University a total of 14 laboratories participated. Umeå University sent 400 ng DNA from 78 familial ALS or FTD cases to 13 laboratories: eight in Europe, four in North America, and one in Asia. All participating research laboratories had already established the methodologies for identifying the GGGGCC-repeat expansion in C9orf72 and published at least one manuscript regarding C9orf72. Each laboratory was asked to analyse the 78 DNA samples according to their own procedures and classify the results. Umeå University collected all results independently and analysed them in a blinded fashion. Eleven laboratories used RP-PCR and amplicon-length analysis, and three laboratories used RP-PCR alone. Independently to RP-PCR and ampliconlength analysis, SB was performed in three laboratories. Patients and DNA extraction Blood samples of 78 familial ALS or FTD patients from 32 families living in the Nordic countries, Switzerland and Portugal were collected. The sex ratio was 1.75 males per female. The ALS patients were diagnosed according to the EFNS consensus diagnostic criteria,11 and the FTD patients according to the Neary criteria.12 Autopsies were performed in 13 patients confirming the diagnosis of ALS or FTD neuropathologically. Whole venous blood was drawn into EDTA-containing vacuum tubes and following centrifugation, the buffy coat was isolated. The samples were collected during the time period 1993–2012 and stored as buffy coat in −80°C freezers until DNA extraction. The DNA was extracted according to the manufacturer’s protocol with the DNA extraction kit NUCLEON BACC2 (GE Healthcare, Piscataway, New Jersey, USA) and DNA from the same extraction batch was sent to all laboratories. Ethical review boards in Sweden (The Regional Medical Review Board for 2 Northern Sweden), Switzerland (Ethikkomission des Kantons St Gallen), and Portugal (Hospital de Santa Maria Ethics Committee, Lisbon) approved this study, and all participants gave informed written consent. RP-PCR, amplicon-length analyses, and SB The RP-PCR and amplicon-length analyses were done according to each laboratory’s own method, and these are listed in online supplementary table S3. The SB protocols are listed in online supplementary table S5. RESULTS Genotyping results: comparison of the results in 14 laboratories The overall results of 14 laboratories (laboratory A–N) are presented in table 1. When combining amplicon-length analysis and RP-PCR, sensitivity and specificity above 95% were found in seven laboratories (A–E, G and L; 50%). The mean sensitivity of the combined results was 95.0% (73.9–100%), and the mean specificity was 98.0% (87.5–100%). Using RP-PCR analysis alone, a sensitivity and specificity of more than 95% were found in six laboratories (A–D, G and L; 42.9%). The mean sensitivity of RP-PCR alone was 94.3% (71.7–100%) and the mean specificity was 97.3% (87.5–100%). The classification determined by RP-PCR alone, therefore, changed eight genotype calls in four laboratories (E, F, J and K). Or put differently, 6 of 14 laboratories (42.8%) failed to correctly classify some samples when they performed RP-PCR analysis only. By combining RP-PCR with fragment-length analysis, four laboratories still reported false negative or false positive samples. A significant number of samples (1–10) were unclassifiable/difficult to classify in eight of the laboratories even when RP-PCR and fragment-length analysis were combined. Genotyping results: comparison of genotyped samples The genotyping results of all 78 samples are summarised in online supplementary tables S1 and S2 available online. For 50 samples, the results among all laboratories were consistent. In the RP-PCR-only analysis, there were three individuals (6.5, 26.3 and 32.3) who were either misclassified or failed to classify in RP-PCR; these three samples had between 23 and 32 repeats on the wild-type allele, in addition to a large expansion on the other allele. In the amplicon-length analysis, two samples (samples 8.1 and 8.2) from the same family (number 8) were hard to classify: six laboratories identified two amplicons, four laboratories identified one amplicon, and one laboratory classified the samples as ‘undecided’. We sequenced these samples and revealed that one allele was a wild-type allele with two repeats, and the other allele had six repeats with a complex of 15 bp deletion/17 bp insertion mutation just after the repeat motif (online supplementary figure S1A,B). We found one more sample (sample 32.1) that carried the same nucleotide variant on one allele, and this sample also carried a large repeat expansion on the other allele (online supplementary figure S1C,D). This mutation is located in the low-complexity sequence region of C9orf72,13 and consequently, may interfere with the PCR-based genotyping method. As a reference, SB was performed on all samples in a blinded fashion by three laboratories. There was complete concordance among the three laboratories: 46 samples carried a repeat expansion and 32 samples lacked the expansion (online supplementary figure S2). Akimoto C, et al. J Med Genet 2014;0:1–6. doi:10.1136/jmedgenet-2014-102360 Downloaded from jmg.bmj.com on April 17, 2014 - Published by group.bmj.com Methods Table 1 The results of 14 laboratories on 78 samples Laboratories A B RP-PCR results GGGGCC-repeat expansion Yes 46 46 No 32 32 Q 0 0 False positive 0 0 False negative 0 0 Sensitivity (%) 100 100 Specificity (%) 100 100 Unclassified (%) 0 0 Amplicon-length analysis results Numbers of amplicon 0 0 0 1 54 54 2 24 24 Q 0 0 RP-PCR+amplicon-length analysis results GGGGCC-repeat expansion Yes 46 46 No 32 32 Q 0 0 False positive 0 0 False negative 0 0 Sensitivity (%) 100 100 Specificity (%) 100 100 Unclassified (%) 0 0 C D E F G H I J K L M N 46 32 0 0 0 100 100 0 46 32 0 0 0 100 100 0 42 32 4 0 1 91.3 96.8 5.1 48 28 2 2 0 100 87.5 2.6 45 33 0 0 1 97.8 100 0 43 32 3 0 0 93.5 100 3.8 43 32 3 0 0 93.5 100 3.8 45 30 3 2 0 93.5 93.8 3.8 34 33 11 1 2 71.7 96.9 14.1 44 32 2 0 0 95.7 100 2.6 41 33 4 0 1 89.1 100 5.1 43 28 7 0 0 93.5 87.5 9.0 1 55 22 0 0 56 22 0 0 56 22 0 0 54 24 0 0 54 24 0 0 51 24 3 0 56 22 0 0 54 24 0 0 51 24 3 N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. N.D. 46 32 0 0 0 100 100 0 46 32 0 0 0 100 100 0 46 32 0 0 0 100 100 0 48 29 1 2 0 100 90.6 1.3 45 33 0 0 1 97.8 100 0 43 32 3 0 0 93.5 100 3.8 43 32 3 0 0 93.5 100 3.8 43 30 5 0 0 93.5 93.8 6.4 34 34 10 0 2 73.9 100 12.8 44 32 2 0 0 95.7 100 2.6 41 33 4 0 1 89.1 100 5.1 43 28 7 0 0 93.5 87.5 9.0 No, sample numbers without large GGGGCC-repeat expansion; N.D., not determined; Q, sample numbers of undecided or unclassified samples Yes: sample numbers with large GGGGCC-repeat expansion. DISCUSSION Our blinded multicenter study demonstrates limitations of PCR-based techniques used to assess C9orf72 GGGGCC-repeats, emphasising the need of detailed technical consensus guidelines for diagnostic and research settings. Comparison of the methods of RP-PCR and amplicon-length analysis Based on RP-PCR results alone, 50 samples (64.1%) showed congruent results among the participating laboratories. There are many variable RP-PCR protocols (see online supplementary table S3) and a comprehensive comparison is difficult. In summary, the RP-PCR protocols of the four laboratories (A–D) with 100% sensitivity and specificity, we found that laboratories A and C used almost identical methods. Laboratory B used primers that were a modification of the ones previously published,1 and they deleted the unspecific linker region between the fluorescence tag and C9orf72-specific sequence. In laboratory D, the RP-PCR was performed with only two primers. The primers sets P1, 2, 3 and P4, 5, 6 were the most commonly used with five laboratories using each set, and two of the laboratories that obtained 100% sensitivity and specificity used primers set P1, 2, 3. Among the laboratories that failed to classify samples in concordance with the SB results (having false positive and/or false negative), we found that one used a very short PCR elongation time, the PCR products were diluted extensively before capillary electrophoresis, and the Akimoto C, et al. J Med Genet 2014;0:1–6. doi:10.1136/jmedgenet-2014-102360 concentration of deaza-dGTP was very low, or deaza-dGTP was not used at all. In the amplicon-length analysis alone, 72 samples (92.3%) had concordant results, highlighting the reliability of this technique, regardless of the differences in PCR reactions and PCR protocols. The set of primers were the same in all laboratories except one, but the PCR reactions and PCR protocols were all different between the laboratories (see online supplementary table S3). Thus, it is not possible to identify specific parameters that could explain the incorrect results for the six samples that were not concordant between the laboratories. Analyses of the results All five laboratories that obtained full concordance of the PCR-based and SB results used RP-PCR in combination with amplicon-length analysis. None of the laboratories that performed RP-PCR alone reported the correct genotype in all samples. The sensitivity and specificity increased, and the percentage of unclassified samples decreased in three laboratories (E, F and K) when they performed RP-PCR and amplicon-length analysis. Accordingly, a combination of amplicon-length analysis and RP-PCR methodology is recommended to obtain the highest level of sensitivity and specificity, but it should be emphasised that a high risk of misclassification as either false positive or false negative (6 samples in four laboratories) still exists. The RP-PCR results alone seemed difficult to interpret if one allele with a relatively large number (20–32) of 3 Downloaded from jmg.bmj.com on April 17, 2014 - Published by group.bmj.com Methods GGGGCC-repeats was present in combination with a large repeat expansion on the other allele. This was demonstrated by three individuals who could not be genotyped using RP-PCR alone in five laboratories, possibly because the saw-tooth pattern curve of the large expanded alleles were hidden behind the peaks of the allele with 20–32 repeats (figure 1). Similarly, this intermediate 20–32 repeat allele could easily mimic an expanded allele and become a cause of false positive results. Based on our data, there is no common definition of what a ‘GGGGCC-repeat expansion’ in C9orf72 is, and laboratories classify it in different ways. For example, some laboratories used clear cut-offs, for example, of more than 24 or 30 repeats, while other laboratories used the definition that a saw-tooth pattern in RP-PCR corresponds to a GGGGCC-repeat expansion (see online supplementary table S4). In this study, there was no false positive result based on different classifications of what is an ‘expansion’. This study was designed to compare the genotyping results of C9orf72 among laboratories using the same DNA. An identical amount of DNA was send to all laboratories, but the concentration and quality of DNA may have changed Figure 1 Results from RP-PCR and amplicon-length analysis of sample 6.5. (A) A-1 is the full shape of RP-PCR and A-2 is a 16-times scale-up (Y-axis) shape of A-1. It is possible to see the clear saw-tooth pattern after scale-up. A-3 is the result of amplicon-length analysis and there is a number of small peaks before the highest last peak. It may be hard to identify the amplicon numbers because of these small peaks. (B) The RP-PCR figures and classifications of the same sample in different laboratories. The scale of the Y-axis is the same as in A-2. 4 Akimoto C, et al. J Med Genet 2014;0:1–6. doi:10.1136/jmedgenet-2014-102360 Downloaded from jmg.bmj.com on April 17, 2014 - Published by group.bmj.com Methods Figure 2 Flow chart for C9orf72 genotyping in a scientific setting. during shipping and handling. Another possible limitation of the present study is that most reactions were only performed once in each laboratory, and the accuracy may be improved if reactions were repeated in case of doubt, for example, with more DNA (however, only two laboratories requested more DNA). Additionally, all laboratories that participated in this study used their own protocols, and hence, this study was not designed to thoroughly assess every single step in the protocol under similar circumstances within laboratories. Proposed methods for GGGGCC-repeat expansion genotyping in C9orf72 There is an urgent need for broad consensus on analysing GGGGCC-repeat expansions in C9orf72, which is particularly important in a clinical setting (for diagnosing ALS or FTD, or when performing predictive testing of at-risk individuals), but also for research purposes. A possible algorithm for C9orf72 genotyping is presented in figure 2. In conclusion, we recommend, that as an absolute minimum, a combination of ampliconlength analysis and RP-PCR should be performed. We recommend using good quality and quantity of DNA and primers, an appropriate concentration of deaza-dGTP, and a minimum elongation time of 3 min. When results are questionable, we suggest (1) expand the analysed scale in the analysis software, (2) use a higher concentration of PCR products in the capillary electrophoresis and (3) repeat RP-PCR with a higher amount of DNA. Though five of the 14 laboratories got full concordance with SB using PCR-based techniques only, the high risk for misgenotyping using only PCR-based techniques as performed here in nine laboratories, and the devastating consequences misgenotyping may have in clinical practise, make us conclude that SB should always be employed in a diagnostic setting, and should be the preferred method in a research setting of smaller number of samples (eg, analysis of the expansion in autopsy tissue specimens). RP-PCR plus amplicon-length analysis should be used in a research setting and when many samples are to be analysed, for example, in an epidemiological study. Optimally, also is such studies should samples with a saw-tooth pattern be confirmed to have an expansion by SB (figure 2). Akimoto C, et al. J Med Genet 2014;0:1–6. doi:10.1136/jmedgenet-2014-102360 Author affiliations 1 Department of Pharmacology and Clinical Neuroscience, Umeå University, Umeå, Sweden 2 Institute of Human Genetics, Ulm University, Ulm, Germany 3 Department of Neuroscience, Mayo Clinic, Jacksonville, Florida, USA 4 Neurodegenerative Brain Diseases Group, Department of Molecular Genetics, VIB, University of Antwerp—CDE, Antwerp, Belgium 5 Diagnostic Service Facility, Laboratory of neurogenetics, Institute Born-Bunge, University of Antwerp, Antwerp, Belgium 6 Department of Neurology and Neurosurgery, Montreal Neurological Institute and Hospital, McGill University, Montreal, Quebec, Canada 7 Department of Biochemistry, Nimes University Hospital, Nimes Cedex 9, France 8 Center SLA, Montpellier University Hospital, Hôpital Gui-de-Chauliac, Montpellier Cedex 5, France 9 Medizinisch Genetisches Zentrum, München, Germany 10 Department of Neurology, Brain Research Institute, Niigata University, Niigata, Japan 11 Department of Neurology, Brain Center Rudolf Magnus, University Medical Center Utrecht, Utrecht, The Netherlands 12 Faculty of Medicine-University of Lisbon, Instituto de Medicina Molecular, Hospital de Santa Maria, University of Lisbon, Alameda Universidade, Lisbon, Portugal 13 Department of neurology, Kantonsspital St. Gallen and University Hospital, St. Gallen, Switzerland 14 Institute of Psychiatry, King’s College London and King’s Health Partners, London, UK 15 Oxford Medical Genetics Laboratories, Churchill Hospital, Oxford, England 16 Nuffield Department of Clinical Neurosciences, University of Oxford, John Radcliffe hospital, Oxford, UK 17 Department of Neurology, University of Massachusetts Medical School, Worcester, Massachusetts, USA 18 Department of Genetics, Stanford University School of Medicine, Stanford, California, USA 19 Department of Pathophysiology and Transplantation, “Dino Ferrari” Center, Universtà degli Studi di Milano, Milan, Italy 20 Department of Neurology and Laboratory of Neuroscience, IRCCS Istituto Auxologico Italiano, , Milan, Italy 21 Department of Neurology, University of Ulm, Ulm, Germany Acknowledgements We thank the patients and their relatives for participating in this study. We also wish to thank Ann-Charloth Nilsson (Umeå University), Birgit Schmoll (Ulm University), Peter Sapp (University of Massachusetts Medical School), Jovana Kantar and Gonzague Sacaze (Nimes university hospital) for excellent technical assistance. Contributors CA, AV, PMA and CK designed the study, and with MvB and RR wrote the first drafts of the manuscript. MvB, CA and AV also performed lab analysis and interpreted the results, as did MvdB, CL, SL, WC, BN, OO, WvR, BS, MP, KT, PK, AC, AR, JvdZ, HA, AB, DC, AN, DT, WJ, HD, SA, MD-H, TK, AL-J, KM, JL, JV, VS, AG, CS, GR, LvdB, CvB. SP, MdC, MW and PMA accrued the patient cohort. PMA and CK were the PIs on the project. 5 Downloaded from jmg.bmj.com on April 17, 2014 - Published by group.bmj.com Methods Funding This project was funded by the Swedish Science Council, the Brain Research Foundation, Mr B Hållsten’s Brain Research Foundation, The Ulla-Carin Lindquist’s Fundation for ALS Research, the Knut and Alice Wallenberg Foundation, Swedish Brain Power, the European Community’s Health Seventh Framework Programme (FP7/2007–2013) (grant agreement no. 259867), The Belgian Science Policy Office Interuniversity Attraction Poles (IAP) programme, the Flemish Government supported Europe Initiative on Centers of Excellence in Neurodegeneration (CoEN), the Flemish Government initiated Methusalem excellence research programme, Alzheimer Research Foundation, the Medical Foundation Queen Elisabeth, the Research Foundation Flanders (FWO) and the FWO provided a postdoctoral scientist fellowship to JvdZ, University of Antwerp Research Fund, the Swiss ALS Foundation, the Italian Ministry of Health (RF-2009-1473856), Grant-in-Aid for the Research Committee of CNS Degenerative Diseases and Comprehensive Research on Disability Health and Welfare from the Ministry of Health, Labour and Welfare in Japan and Dr Van Blitterswijk is supported by the Milton Safenowitz Post-Doctoral Fellowship for ALS research from the ALS Association. 6 7 Competing interests None. Ethics approval The Medical Ethical Review Boards in Sweden, Switzerland and Portugal. 8 Provenance and peer review Not commissioned; externally peer reviewed. Open Access This is an Open Access article distributed in accordance with the Creative Commons Attribution Non Commercial (CC BY-NC 3.0) license, which permits others to distribute, remix, adapt, build upon this work non-commercially, and license their derivative works on different terms, provided the original work is properly cited and the use is non-commercial. See: http://creativecommons.org/ licenses/by-nc/3.0/ REFERENCES 1 2 3 4 5 6 DeJesus-Hernandez M, Mackenzie IR, Boeve BF, Boxer AL, Baker M, Rutherford NJ, Nicholson AM, Finch NA, Flynn H, Adamson J, Kouru N, Wojtas A, Sengdy P, Hsiung GY, Karydas A, Seeley WW, Josephs KA, Coppola G, Geschwind DH, Wszolek ZK, Feldman H, Knopman DS, Petersen RC, Miller BL, Dickson DW, Boylan KB, Graff-Radford NR, Rademakers R. Expanded GGGGCC hexanucleotide repeat in noncoding region of C9ORF72 causes chromosome 9p-linked FTD and ALS. Neuron 2011;72:245–56. Renton AE, Majounie E, Waite A, Simón-Sánchez J, Rollinson S, Gibbs JR, Schymick JC, Laaksovirta H, van Swieten JC, Myllykangas L, Kalimo H, Paetau A, Abramzon Y, Remes AM, Kaganovich A, Scholz SW, Duckworth J, Ding J, Harmer DW, Hernandez DG, Johnson JO, Mok K, Ryten M, Trabuni D, Guerreiri RJ, Orrell RW, Neal J, Murray A, Pearson J, Jansen IE, Sondervan D, Seelar H, Blake D, Young K, Halliwell N, Callister JB, Toulson G, Richardson A, Gerhard A, Snowden J, Mann D, Neary D, Nalls MA, Peuralinna T, Jansson L, Isoviita VM, Kaivorinne AL, Hölttä-Vuori M, Ikonen E, Sulkava R, Benatar M, Wuu J, Chiò A, Restagno G, Borghera G, Sabatelli M, ITALSGEN ConsortiumHeckerman D, Rogaeva E, Zinman L, Rothstein JD, Sendtner M, Drepper C, Eichier EE, Alkan C, Abdullaev Z, Pack SD, Dutra A, Pak E, Hardy J, Singleton A, Williams NM, Heutink P, Pickering-Brown S, Morris HR, Tienari PJ, Traynor BJ. A hexanucleotide repeat expansion in C9ORF72 is the cause of chromosome 9p21-linked ALS-FTD. Neuron 2011;72:257–68. Gijselinck I, Van Langenhove T, van der Zee J, Sleegers K, Philtjens S, Kleinberger G, Janssens J, Bettens K, van Cauwenberghe C, Pereson S, Engelborghs S, Sieben A, De Jonghe P, Vandenberghe R, Santens P, De Bleecker J, Maes G, Bäumer V, Dillen L, Joris G, Couijt I, Corsmit E, Elinck E, Van Dongen J, Vermeulen S, Van den Broeck M, Vaerenberg C, Mattheijssens M, Peeters K, Robberecht W, Cras P, Martin JJ, De Deyn PP, Cruts M, Van Broeckhoven C. A C9orf72 promoter repeat expansion in a Flanders-Belgian cohort with disorders of the frontotemporal lobar degeneration-amyotrophic lateral sclerosis spectrum: a gene identification study. Lancet Neurol 2012;11:54–65. Smith BN, Newhouse S, Shatunov A, Vance C, Topp S, Johnson L, Miller J, Lee Y, Troakes C, Scott KM, Jones A, Gray I, Wright J, Hortobágyi T, Al-Sarraj S, Rogeli B, Powell J, Lupton M, Lovestone S, Sapp PC, Weber M, Nestor PJ, Schelhaas HJ, Asbroek AA, Silani V, Gellera C, Taroni F, Ticonni N, Van Den Berg L, Veldink J, Van Damme P, Robberecht W, Shaw PJ, Kirby J, Pall H, Morrison KE, Morris A, de Belleroche J, Vianney de Jong JM, Baas F, Andersen PM, Landers J, Brown RH Jr, Weale ME, Al-Chalabi A, Shaw CE. The C9ORF72 expansion mutation is a common cause of ALS+/-FTD in Europe and has a single founder. Eur J Hum Genet 2013;21:102–8. Majounie E, Renton AE, Mok K, Dopper EG, Waite A, Rollinson S, Chio A, Restagno G, Nicolaou N, Simon-Sanchez J, van Swieten JC, Abramzon Y, Johnson JO, Sendtner M, Pamphlett R, Orrell RW, Mead S, Sidle KC, Houlden H, 9 10 11 12 13 Rohrer JD, Morrison KE, Pall H, Talbot K, Ansorge O, Chromosome 9-ALS/FTD Consortium; French research network on FTLD/FTLD/ALS; ITALSGEN ConsortiumHernandez DG, Arepalli S, Sabatelli M, Mora G, Corbo M, Giannini F, Calvo A, Englund E, Borghero G, Floris GL, Remes AM, Laaksovirta H, McCluskey L, Trojanowski JQ, Van Deerlin VM, Schellenberg GD, Nalls MA, Drory VE, Lu CS, Yeh TH, Ishiura H, Takahashi Y, Tsuji S, Le Ber I, Brice A, Drepper C, Williams N, Kirby J, Shaw P, Hardy J, Tienari PJ, Heutink P, Morris HR, Pickering-Brown S, Traynor BJ. Frequency of the C9orf72 hexanucleotide repeat expansion in patients with amyotrophic lateral sclerosis and frontotemporal dementia: a cross-sectional study. Lancet Neurol 2012;11:323–30. Curtis-Cioffi KM, Rodrigueiro DA, Rodrigues VC, Cicarelli RM, Scarel-Caminaga RM. Comparison between the polymerase chain reaction-based screening and the Southern blot methods for identification of fragile X syndrome. Genet Test Mol Biomarkers 2012;16:1303–8. Hantash FM, Goos DG, Tsao D, Quan F, Buller-Burckle A, Peng M, Jarvis M, Sun W, Strom CM. Qualitative assessment of FMR1 (CGG)n triplet repeat status in normal, intermediate, premutation, full mutation, and mosaic carriers in both sexes: implications for fragile X syndrome carrier and newborn screening. Genet Med 2010;12:162–73. Beck J, Poulter M, Hensman D, Rohrer JD, Mahoney CJ, Adamson G, Campbell T, Uphill J, Borg A, Fratta P, Orrell RW, Malaspina A, Rowe J, Brown J, Hodges J, Sidle K, Polke JM, Houlden H, Schott JM, Fox NC, Rossor MN, Tabrizi SJ, Isaacs AM, Hardy J, Warren JD, Collinge J, Mead S. Large C9orf72 hexanucleotide repeat expansions are seen in multiple neurodegenerative syndromes and are more frequent than expected in the UK population. Am J Hum Genet 2013;92:345–53. Dobson-Stone C, Hallupp M, Loy CT, Thompson EM, Haan E, Sue CM, Panegyres PK, Razquin C, Seijo-Martínez M, Rene R, Gascon J, Campdelacreu J, Schmoll B, Volk AE, Brooks WS, Schofield PR, Pastor P, Kwok JB. C9ORF72 repeat expansion in Australian and Spanish frontotemporal dementia patients. PLoS ONE 2013;8:e56899. van Blitterswijk M, DeJesus-Hernandez M, Niemantsverdriet E, Murray ME, Heckman MG, Diehl NN, Brown PH, Baker MC, Finch NA, Bauer PO, Serrano G, Beach TG, Josephs KA, Knopman DS, Petersen RC, Boeve BF, Graff-Radford NR, Boylan KB, Petrucelli L, Dickson DW, Rademakers R. Association between repeat sizes and clinical and pathological characteristics in carriers of C9ORF72 repeat expansions (Xpansize-72): a cross-sectional cohort study. Lancet Neurol 2013;12:978–88. Andersen PM, Abrahams S, Borasio GD, de Carvalho M, Chio A, Van Damme P, Hardiman O, Kollewe K, Morrison KE, Petri S, Pradat PF, Silani V, Tomik B, Wasner M, Weber M. EFNS Task Force on Management of Amyotrophic Lateral Sclerosis. EFNS guidelines on the Clinical Management of Amyotrophic Lateral Sclerosis (MALS)—revised report of an EFNS task force. Eur J Neurol 2012;19:360–75. Neary D, Snowden J, Mann D. Frontotemporal dementia. Lancet Neurol 2005;4:771–80. van der Zee J, Gijselinck I, Dillen L, Van Langenhove T, Theuns J, Engelborghs S, Philtjens S, Vandenbulcke M, Sleegers K, Sieben A, Bäumer V, Maes G, Corsmit E, Borroni B, Padovani A, Archetti S, Perneczky R, Diehl-Schmid J, de Mendonça A, Miltenberger-Miltenyi G, Pereira S, Pimentel J, Nacmias B, Bagnoli S, Sorbi S, Graff C, Chiang HH, Westerlund M, Sanchez-Valle R, Llado A, Gelpi E, Santana I, Almeida MR, Santiago B, Frisoni G, Zanetti O, Bonvicini C, Synofzik M, Maetzler W, Vom Hagen JM, Schöls L, Heneka MT, Jessen F, Matej R, Parobkova E, Kovacs GG, Ströbel T, Sarafov S, Tournev I, Jordanova A, Danek A, Arzberger T, Fabrizi GM, Testi S, Salmon E, Santens P, Martin JJ, Cras P, Vandenberghe R, De Deyn PP, Cruts M, Van Broeckhoven C, van der Zee J, Gijselinck I, Dillen L, Van Langenhove T, Theuns J, Philtjens S, Sleegers K, Bäumer V, Maes G, Corsmit E, Engelborghs S, De Deyn PP, Cras P, Engelborghs S, De Deyn PP, Vandenbulcke M, Borroni B, Padovani A, Archetti S, Perneczky R, Diehl-Schmid J, Synofzik M, Maetzler W, Müller Vom Hagen J, Schöls L, Synofzik M, Maetzler W, Müller Vom Hagen J, Schöls L, Heneka MT, Jessen F, Ramirez A, Kurzwelly D, Sachtleben C, Mairer W, de Mendonça A, Miltenberger-Miltenyi G, Pereira S, Firmo C, Pimentel J, Sanchez-Valle R, Llado A, Antonell A, Molinuevo J, Gelpi E, Graff C, Chiang HH, Westerlund M, Graff C, Kinhult Ståhlbom A, Thonberg H, Nennesmo I, Börjesson-Hanson A, Nacmias B, Bagnoli S, Sorbi S, Bessi V, Piaceri I, Santana I, Santiago B, Santana I, Helena Ribeiro M, Rosário Almeida M, Oliveira C, Massano J, Garret C, Pires P, Frisoni G, Zanetti O, Bonvicini C, Sarafov S, Tournev I, Jordanova A, Tournev I, Kovacs GG, Ströbel T, Heneka MT, Jessen F, Ramirez A, Kurzwelly D, Sachtleben C, Mairer W, Jessen F, Matej R, Parobkova E, Danel A, Arzberger T, Maria Fabrizi G, Testi S, Ferrari S, Cavallaro T, Salmon E, Santens P, Cras P; European Early-Onset Dementia Consortium. A pan-European study of the C9orf72 repeat associated with FTLD: geographic prevalence, genomic instability, and intermediate repeats. Hum Mutat 2013;34:363–73. Akimoto C, et al. J Med Genet 2014;0:1–6. doi:10.1136/jmedgenet-2014-102360 Downloaded from jmg.bmj.com on April 17, 2014 - Published by group.bmj.com A blinded international study on the reliability of genetic testing for GGGGCC-repeat expansions in C9orf72 reveals marked differences in results among 14 laboratories Chizuru Akimoto, Alexander E Volk, Marka van Blitterswijk, et al. J Med Genet published online April 4, 2014 doi: 10.1136/jmedgenet-2014-102360 Updated information and services can be found at: http://jmg.bmj.com/content/early/2014/04/04/jmedgenet-2014-102360.full.html These include: Data Supplement "Supplementary Data" http://jmg.bmj.com/content/suppl/2014/04/04/jmedgenet-2014-102360.DC1.html References This article cites 13 articles http://jmg.bmj.com/content/early/2014/04/04/jmedgenet-2014-102360.full.html#ref-list-1 Open Access P<P Email alerting service This is an Open Access article distributed in accordance with the Creative Commons Attribution Non Commercial (CC BY-NC 3.0) license, which permits others to distribute, remix, adapt, build upon this work non-commercially, and license their derivative works on different terms, provided the original work is properly cited and the use is non-commercial. See: http://creativecommons.org/licenses/by-nc/3.0/ Published online April 4, 2014 in advance of the print journal. 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