Search Results (35,206)

Endophytic Pseudomonas species from agricultural crops have been extensively studied for their plant-growth-promoting (PGP) potential, but little is known about their PGP potential when isolated from perennial trees. This study investigated the plant-growth-promoting (PGP) potential of an endophyte, Pseudomonas oryzihabitans GDW1, isolated from a healthy pine tree by taking tomato as a host plant. We employed multiomics approaches (transcriptome and bacteriome analyses) to elucidate the underlying PGP mechanisms of GDW1. The results of greenhouse experiments revealed that the application of GDW1 significantly improved tomato plant growth, increasing shoot length, root length, fresh weight, and biomass accumulation by up to 44%, 38%, 54%, and 59%, respectively, compared with control. Transcriptomic analysis revealed 1158 differentially expressed genes significantly enriched in the plant hormone signaling (auxin, gibberellin, and cytokinin) and stress response (plant–pathogen interaction, MAPK signaling pathway-plant, and phenylpropanoid biosynthesis) pathways. Protein–protein interaction network analysis revealed nine hub genes (MAPK10, ARF19-1, SlCKX1, GA2ox2, PAL5, SlWRKY37, GH3.6, XTH3, and NML1) related to stress tolerance, hormone control, and plant defense. Analysis of the tomato root bacteriome through 16S rRNA gene amplicon sequencing revealed that GDW1 inoculation dramatically altered the root bacterial community structure, enhancing the diversity and abundance of beneficial taxa (Proteobacteria and Bacteroidota). Co-occurrence network analysis showed a complex bacterial network in treated plants, suggesting increasingly intricate microbial relationships and improved nutrient absorption. Additionally, FAPROTAX and PICRUSt2 functional prediction analyses suggested the role of GDW1 in nitrogen cycling, organic matter degradation, plant growth promotion, and stress resistance. In conclusion, this study provides novel insights into the symbiotic relationship between P. oryzihabitans GDW1 and tomato plants, highlighting its potential as a biofertilizer for sustainable agriculture and a means of reducing the reliance on agrochemicals. Full article

This study looked at how methionine (Met) affects on serum biochemical indicators, antioxidant indicators, and the fecal microbiota of lactating donkeys. A total of 18 healthy donkeys at the mid-lactation stage were used in this study. They were given concentrate meals with varying concentrations of Met after being randomly split into three groups: Met group I (M1) received 5 g/d of Met, Met group II (M2) received 15 g/d of Met, and the control group (C) received 0 g/d of Met. The trial lasted for five weeks in total. Fecal microbes, antioxidant markers, and blood biochemical indicators were examined. The findings showed that while the levels of malondialdehyde (MDA) decreased (p < 0.05), the addition of Met (15 g/d) significantly enhanced the total antioxidant capacity (T-AOC) and catalase (CAT) activity. Milk samples from the different groups trended towards having significant differences in the levels of the serum biochemical indicators albumin (ALB) and lactate dehydrogenase (LDH) (0.05 < p < 0.1). A fecal microbiome analysis revealed that the addition of Met (5 g/d) increased the abundance of Methanocorpusculum and Ruminococcus, and the addition of 15 g/d of Met increased the abundance of Ruminococcus, Peptococcus, and Anaeroplasma while decreasing the abundance of the [Eubacterium]_ruminantium_group. A correlation analysis revealed that Ruminococcus and Methanocorpusculum were positively correlated with the T-AOC and CAT activity (M1 group). Peptococcus was significantly negatively correlated with MDA levels and positively correlated with the T-AOC (M2 group). Anaeroplasma was positively correlated with CAT activity (M2 group). The above results indicated that Met increased donkey antioxidant levels and modulated the abundance of the fecal microbial community. These findings lay the groundwork for boosting the production performance and general health of nursing donkeys. Full article

This study assessed the impact of planting techniques and short-term organic additions on soil quality, enzyme activity, and bacterial community composition. Biochar (BC) amendment substantially enhanced the ACE, Chao 1, and Shannon indices in direct-seeded rice (DS). Principal coordinate analysis (PCoA) and dissimilarity distances confirmed significant differences in the rhizosphere bacterial community composition associated with planting methods and organic applications. At the phylum level, transplanting (TT) significantly increased the abundance of Proteobacteria, Planctomycetes, Bacteroidetes, Firmicutes, and Verrucomicrobia, whereas DS significantly reduced the abundance of Acidobacteria, Chloroflexi, Actinobacteria, Gemmatimonadetes, and WPS-2. Rice straw (RS) application was associated with increased Proteobacteria, Acidobacteria, Chloroflexi, and Gammaproteobacteria, while BC application improved Bacteroidetes, Firmicutes, and Verrucomicrobia. Planting methods and organic amendments were also observed to affect soil enzyme activities and physicochemical properties. DS was associated with an increase in microbial biomass nitrogen (MBN) and carbon (MBC), cellulase activities (CA), total phosphorus (TP), available nitrogen (AN), and available potassium (AK), while TT significantly increased urease activities (UA). Compared to BC and the control (CK), RS significantly increased CA, AN, and available phosphorus (AP). RDA ordination plots were used to examine the interactions between soil bacterial communities and soil physicochemical properties; planting techniques and organic additions had different effects on soil bacterial communities. Compared to RS and CK, BC enhanced MBN, MBC, UA, and AK. According to Pearson’s correlation analysis, Chloroflexi levels were positively associated with those of organic carbon (OC), MBN, and MBC. OC, TP, MBN, and CA positively correlated with gemmatimonadetes. In conclusion, these data reveal that planting practices and short-term organic inputs alter soil’s physicochemical parameters, enzyme activity, and microbial community composition. Full article

Background: Wild boletes are famous for their exceptional flavor and nutritional value. Due to their susceptibility to decay and spoilage, dry storage is a common method for processing and preservation. However, few studies have reported on the alterations of metabolites of boletes resulting from different drying methods. This paper aims to investigate the metabolic changes in two species of boletes, Butyriboletus roseoflavus and Lanmaoa asiatica, subjected to three drying methods: hot-air drying, microwave drying, and freeze drying. Method and Result: Nuclear magnetic resonance (NMR) metabolomics was utilized for multivariate data analysis. In total, 27 metabolites were identified from the two species of boletes, including amino acids such as glutamate and leucine, sugars like glucose and sucrose, and alkaloids like choline. Among these, 17 metabolites were classified as differential metabolites, comprising 12 amino acids, 4 sugars, and 1 alkaloid. Differential metabolites were quantified by quantitative NMR (qNMR), and these metabolites were subsequently analyzed using the Kyoto Encyclopedia of Genes and Genomes (KEGG) database for pathway enrichment analysis. KEGG pathway analysis revealed that the different drying methods resulted in significantly distinct metabolic pathways for these differential metabolites, resulting in the enrichment of amino acid metabolism and starch and sucrose metabolism pathways. Conclusions: This metabolomics study elucidates the differences in metabolite composition and abundance between the two species of boletes, providing a theoretical foundation for selecting appropriate drying methods for their preservation. Full article

This study aimed to clarify the scientific quantification of fertilizer nitrogen (N) uptake and utilization, its destination, and its residual distribution in the soil at a depth of 0–30 cm after biochar application using ¹⁵N tracer technology. The purpose was to provide a theoretical basis for developing a scientific application strategy for N fertilizer and biochar in irrigated farmland areas. Two levels of N fertilizer application were set up using the ¹⁵N labeling method in microareas of large fields: the regular amount of N fertilizer (N1: 300 kg·ha⁻¹) and a reduction of N fertilizer by 15% (N2: 255 kg·ha⁻¹). Further, three levels of biochar application were set up: no biochar (B0: 0 kg·ha⁻¹), a low amount of biochar (B1: 10 × 10³ kg·ha⁻¹), and a medium amount of biochar (B2: 20 × 10³ kg·ha⁻¹). The tested biochar was derived from corn stover (maize straw). The natural abundance of ¹⁵N-labeled fertilizer N, the total N content of each aboveground organ, and the total N content of soil at a depth of 0–30 cm in a spring wheat field at maturity were determined, and the yield was measured in the corresponding plots. The proportion of ¹⁵N-labeled fertilizer N uptake by each organ of spring wheat and the soil N uptake was 20.60–35.32% and more than 64.68%, respectively. Moreover, the proportion of soil N uptake showed a decreasing trend with an increase in biochar application. The spring wheat N uptake and utilization rate, the residue rate in the soil at a depth of 0–30 cm, the total utilization rate, and the rate of loss of ¹⁵N-labeled fertilizer N ranged from 15.21% to 29.61%, 23.33% to 28.93%, 38.54% to 58.54%, and 41.46% to 61.46%, respectively. The spring wheat N fertilizer utilization rate, fertilizer N residue rate in soil, and total fertilizer N utilization rate all increased gradually with an increase in biochar application, except for the N loss rate, which decreased gradually. When N fertilizer reduction was combined with medium biochar (B2N2), the yield of spring wheat significantly improved, mainly due to an increase in the number of grains in spikes. Under this treatment, the number of grains in spikes of spring wheat was 41.9, and the yield reached 7075.54 kg·ha⁻¹, which was an increase of 9.69–28.25% and 10.91–25.35%, respectively, compared with other treatments. Yield increased by up to 25.35%, and nitrogen loss decreased by 48.24% under the B2N2 treatment. Biochar application could promote the amount and proportion of fertilizer N uptake in various organs of spring wheat as well as in the soil at a depth of 0–30 cm. In this study, a 15% reduction in N fertilizer (255 kg·ha⁻¹) combined with 20 × 10³ kg·ha⁻¹ biochar application initially helped achieve the goal of increasing spring wheat yield and N fertilizer uptake, as well as improving fertilizer N utilization, providing an optimal scientific application strategy for N fertilizer and biochar in the farmland of the irrigation area. These results substantiate the hypothesis that biochar application enhances spring wheat (Triticum aestivum L.) assimilation of fertilizer-derived nitrogen (¹⁵N) while concomitantly improving fertilizer nitrogen retention in the soil matrix, which could provide a sustainable framework for nitrogen management in irrigated farmlands. Full article

As is the case for all forms of cultural heritage, museum collections are under a serious threat of biodeterioration, with fungi playing a significant role in this phenomenon, compromising the preservation and dissemination of past knowledge, artifacts and traditions. As part of the ongoing efforts to study the fungal contaminations observed in the artifacts that compose the collection of the Science Museum of the University of Coimbra, non-invasive sampling of four objects present in the archive was conducted and 43 fungal isolates were retrieved. These isolates were subjected to a comprehensive analysis based on molecular and morphological characteristics and were identified as belonging to 15 different species. Of the 15 isolated species, 5 were selected for in vitro antifungal essential oil assays, based on their relative abundance and biodeteriorative potential. For these, essential oils of Cymbopogon citratus, Lavandula angustifolia, Thapsia gummifera, Mentha pulegium, Mentha suaveolens, Thapsia villosa, Thymus mastichina and Agastache foeniculum were obtained via hydrodistillation, in accordance with the European Pharmacopeia. Of the tested oils, most impacted fungal growth, with Cymbopogon citratus and Lavandula angustifolia being able to fully inhibit the growth of most fungi even at the lowest tested concentrations. Full article

Objectives: This study aimed to assess the effects of storage temperature on the lipidomics profile change in Pacific saury (Cololabis saira). Methods: In this paper, C. saira underwent frozen storage at two different temperatures, T1 (−18 °C) and T2 (−25 °C), for a duration of three months. Chemical and lipidomic methods were used to determine the changes in lipids during the storage process. Results: Results showed that the content of triglyceride and phospholipid decreased significantly (p < 0.05), and free fatty acid increased significantly (p < 0.05), while the content of total cholesterol remained relatively constant across different storage temperatures. Additionally, an increasing trend in AV, POV, and TBARS contents was observed after the freezing process, with lipid oxidation being significantly higher in the −18 °C group compared to the −25 °C group (p < 0.05). A comprehensive analysis identified 4854 lipid molecules in the muscles of C. saira, categorized into 46 lipid subclasses, predominantly including triglycerides (TG), phosphatidylcholine (PC), phosphatidylethanolamine (PE), phosphatidylinositol (PI), phosphatidylglycerol (PG), and diglycerides (DG). Among them, TG was the most abundant lipid, followed by PC. Using orthogonal partial least squares discriminant analysis (OPLS-DA) with a variable importance in projection (VIP) score > 1 and p value < 0.05 as criteria, 338, 271, and 103 highly significantly differentiated lipids were detected in the comparison groups CK vs. T1, CK vs. T2, and T1 vs. T2, respectively. The results indicated that storage at −18 °C had a more pronounced effect than storage at −25 °C. During the freezing process, TG expression was significantly down-regulated, and TG(18:4_14:0_20:5), TG(20:5_13:0_22:6), TG(22:6_14:1_22:6), and TG(18:4_13:0_22:6) were the most predominant individuals. The CK group was initially present in C. saira before storage. Differential lipid molecules in the CK vs. T1 and CK vs. T2 groups were screened using a fold change (FC) > 2 or FC < 0.5. In the CK vs. T2 group, 102 highly significant differential lipid molecules were identified, with 55 being down-regulated across seven subclasses. In contrast, the CK vs. T1 group revealed 254 highly significant differential lipid molecules, with 85 down-regulated across 13 subclasses. The results showed that more PCs and PEs were down-regulated, with a higher differential abundance of PE and PC in the −25 °C group compared to the −18 °C group. The differential metabolites were primarily enriched in 17 metabolic pathways, with glycerophospholipid metabolism being the most prominent, followed by sphingolipid metabolism during the frozen storage. Conclusions: Overall, −25 °C storage in production was more favorable for maintaining the lipid stability of C. saira. This work could provide useful information for aquatic product processing and lipidomics. Full article

This study addresses the increasing demand for sustainable water production by investigating the integration of solar energy into a multi-effect desalination (MED) plant located in Zuara, Libya. It is acknowledged that regions with high water demand frequently experience elevated levels of solar radiation; thus, this approach seeks to reduce dependence on fossil fuels and mitigate harmful emissions. Three operational modes were analyzed and compared: (1) daytime-only solar operation, (2) hybrid solar–boiler operation, and (3) solar operation with thermal energy storage. A validated mathematical model, informed by real empirical data, was used to assess energy and exergy efficiencies as well as production costs per cubic meter of desalinated water. The results indicate a trade-off between cost-effectiveness and environmental impact. The fossil fuel-based mode demonstrated the highest energy efficiency but also produced the greatest pollution. Conversely, the solar-only daytime mode, while free of emissions, was the costliest (USD 1.4/m³) due to its limited operational hours. The hybrid mode offered a compromise, presenting lower costs (USD 0.79/m³) and moderate land use, yet it still relied on fossil fuels. The thermal storage mode facilitated continuous, clean desalination at a higher cost (USD 0.97/m³) and required the largest solar field area. This study demonstrates the potential of solar-powered MED plants for sustainable water production, particularly in regions characterized by abundant sunlight and water scarcity. Furthermore, this research provides a comprehensive framework for selecting the optimal operational mode based on specific priorities, such as minimizing environmental impact, reducing costs, or maximizing operational flexibility. Full article

Serum amyloid A (SAA) is one of the most abundant acute-phase response proteins and has been extensively studied in vertebrates for its role in modulation of the inflammatory response and as a marker of disease diagnosis. By comparison, SAA is rarely identified in aquatic species and its physical functions are also not well studied. The present study identified the only one gene encoding SAA protein in oyster Crassostrea gigas. The open reading frame (ORF) of CgSAA was of 417 bp, encoding a putative polypeptide of 138 amino acid residues with a predicted molecular weight of 15.66 kDa. CgSAA was composed of a signal peptide (residues 1–22) and a conserved SAA domain (residues 36–138). The mRNA expression of CgSAA in normal individuals was detectable but at a low level, with the lowest expression level in the tissue of labial palp and a slightly higher expression level in hemocytes. The mRNA expression level of CgSAA was significantly up-regulated at 6 h (2.76-fold of that in control group, p < 0.01) post V. splendidus stimulation. It was also significantly induced under environmental stress at high temperature (34 °C) or low salinity (15‰ salinity). The recombinant protein rCgSAA was expressed in Escherichia coli and purified by affinity chromatography. After rCgSAA was injected into oysters or incubated with culture primary hemocytes, the mRNA expressions of the cytokines CgIL17-1, CgIL17-5, and CgTNF were all significantly up-regulated. The results collectively suggested that CgSAA, as a conserved acute-phase response protein in oyster, was quickly induced under environmental stress and promoted the expressions of cytokines, which provide fresh ideas for understanding the roles of SAA proteins in aquatic invertebrates. Full article

Constructed wetlands play a critical role in mitigating aquaculture wastewater pollution. However, the comprehensive treatment performance of aquatic plants and microorganisms under various water treatment processes remains insufficiently understood. Here, a multi-stage surface flow constructed wetland (SFCW) comprising four different aquatic plant species, along with aeration and biofiltration membrane technologies, was investigated to explore the combined effects of aquatic plants and epiphytic biofilms on wastewater removal efficiency across different vegetation periods and treatment processes. The results demonstrated that the total removal efficiency consistently exceeded 60% in both vegetation periods, effectively intercepting a range of pollutants present in aquaculture wastewater. Changes in the vegetation period influenced the performance of the SFCW, with the system’s ability to treat total nitrogen becoming more stable over time. The removal efficiency of the treatment pond planted with submerged plants was highest in July, while the pond planted with emergent plants showed an increased removal rate in November. The aeration pond played a significant role in enhancing dissolved oxygen levels, thereby improving phosphorus removal in July and nitrogen removal in November. Additionally, the α-diversity of epiphytic bacteria in the aeration and biofiltration ponds was significantly higher compared to other ponds. In terms of bacterial composition, the abundance of Firmicutes was notably higher in July, whereas Nitrospirota and Acidobacteriota exhibited a significant increase in November. Furthermore, the functional genes associated with sulfur metabolism, nitrogen fixation, and oxidative phosphorylation displayed significant temporal variations in the aeration pond, highlighting that both growth period changes and treatment processes influence the expression of functional genes within biofilms. Our findings suggest that the integration of water treatment processes in SFCWs enhances the synergistic effects between aquatic plants and microorganisms, helping to mitigate the adverse impacts of vegetation period changes and ensuring stable and efficient wastewater treatment performance. Full article

In this article, we look at the stochastic Wu–Zhang system (SWZS) forced by multiplicative Brownian motion in the Itô sense. The mapping method, which is an effective analytical method, is employed to investigate the exact wave solutions of the aforementioned equation. The proposed scheme provides new types of exact solutions including periodic solitons, kink solitons, singular solitons and so on, to describe the wave propagation in quantum mechanics and analyze a wide range of essential physical phenomena. In the absence of noise, we obtain some previously found solutions of SWZS. Additionally, using the MATLAB program, the impacts of the noise term on the analytical solution of the SWZS were demonstrated. Full article

Rosa roxburghii Tratt (RRT) is widely cultivated in Guizhou Province, China. In recent years, RRT has emerged as one of the most promising new fruit crops in China, primarily because of its remarkably high levels of ascorbic acid (AsA). In this research, we assessed the AsA levels in RRT across various growth phases. The findings demonstrate that the AsA concentration in RRT fruits progressively increased in a linear fashion throughout development, peaking at 2274.60 mg/(100 g FW) when the fruit reached maturity (84 DAA). Furthermore, we conducted an integrated analysis of transcriptomic and proteomic data for the first time to investigate the mechanisms responsible for AsA accumulation in RRT. Our results show that differentially expressed genes (DEGs) and differentially abundant proteins (DAPs) were primarily associated with the ascorbate and aldarate metabolism pathway, suggesting that this pathway plays a crucial role in regulating AsA accumulation in RRT. This study elucidates the molecular mechanism underlying AsA accumulation in RRT and provides a robust scientific foundation for subsequent research on AsA accumulation in RRT. Full article

Rooftop photovoltaics (RPVs) are crucial in addressing energy shortages and environmental concerns caused by fossil fuel combustion. To promote the optimal deployment of RPVs in Tianjin, a region with abundant solar resources and dense buildings, this study proposes a framework that integrates building vector data with a deep learning model to extract currently installed RPVs from remote sensing images, and further estimate the development potential of RPVs. A total of 86,363 RPV polygons were extracted, covering an area of 10.34 km². More than 70% of these RPVs are concentrated on large and low-rise buildings, and a similar proportion is found in industrial buildings, as these buildings offer favorable installation conditions. Combining solar radiation and construction land development planning, we further determined the potential deployment zone of RPVs covering about 13% of the Tianjin’s land area, which represents 31.31 TWh per year of power generation potential. In the future, it is recommended to prioritize RPV installation on large and low-rise buildings or industrial buildings in the potential deployment zone, which could provide higher power generation and contribute significantly to environmental emission reduction goals. The proposed research framework can also be applied to other cities. Full article

Several recent studies have reported a significantly greater prevalence of Clostridium perfringens encoding the novel pore-forming netF toxin gene in dogs with acute hemorrhagic diarrhea syndrome. However, the presence of netF in other canine diarrheal diseases remains poorly characterized. This retrospective, cross-sectional study aimed to describe the prevalence and abundance of netF-positive C. perfringens in fecal samples from 352 dogs with acute and chronic gastrointestinal diseases. Dogs were divided into five groups: acute hemorrhagic diarrhea syndrome (AHDS), acute diarrhea (AD), chronic enteropathy (CE), exocrine pancreatic insufficiency (EPI), and healthy controls (HCs). The abundances of C. perfringens 16S rRNA, the C. perfringens enterotoxin gene and the C. perfringens netF gene in fecal samples were analyzed by quantitative polymerase chain reaction. In total, 7 of 15 (46.7%) dogs with AHDS, 10 of 75 (13.3%) dogs with AD, 2 of 120 (1.7%) dogs with CE, 1 of 12 (8.3%) dogs with EPI, and 1 of 130 (0.8%) HC dogs tested positive for netF. This study provides further evidence that NetF may be a significant contributor to the etiology of AHDS and potentially to a subset of acute nonhemorrhagic diarrhea cases, while it was only rarely detected in chronic gastrointestinal disease phenotypes. Full article

In this study, samples were collected from different types of artificial fish reefs and prevention and control areas in the sea areas of the northern part of Da Changshan Island and the northeastern part of Xiao Changshan Island in the North Yellow Sea. The purpose is to compare the differences in the bacterial communities among different regions, determine the impacts of environmental factors on the bacterial communities, and evaluate the ecological effects of artificial fish reefs on the marine bacterial communities. We obtained a total of 2,128,186 effective sequences and 4321 bacterial operational taxonomic units (OTUs), which were classified into 14 phyla and 76 genera. Proteobacteria were the most abundant phylum across the 32 samples, followed by Bacteroidetes. We found that all samples from the deep-sea control area exhibited the highest bacterial richness. In addition, all samples from the shallow-water concrete reef exhibited high community richness. The distribution of bacterial communities showed differences among different regions. In two specific sea areas, the bacteria in the sediment samples exhibited particularly remarkable characteristics of high diversity. Importantly, environmental factors significantly influence bacterial communities. In seawater samples, salinity (Sal) and dissolved oxygen (DO) were the primary factors affecting bacterial communities. Furthermore, grain size (GS) emerged as the most critical physicochemical factor influencing bacterial communities in sediment. This study compared the characteristics of bacterial communities in different types of artificial reefs and control areas in two marine ranches and revealed the main environmental factors affecting the bacterial communities. This is of great significance for protecting biodiversity and evaluating the ecological effects of artificial reef placement. Full article