Shoot tip necrosis (STN) is one of the main physiological disorders in the micropropagation of pistachios. In the current study, the effects of CaNO3.4H2O at 196 mg/L and 291 mg/L, H3BO3 at 196 mg/L and 291 mg/L, and CaCl2.2H2O at 2,980 mg/L on STN and hyperhydricity reduction of Pistacia vera L., ‘Badami’ and ‘UCB1’ rootstocks were assessed, compared to the MS standard medium containing 3% sucrose, 0.7% agar supplemented with benzyladenine (BA) (1.5 mg/L), indole butyric acid (IBA) (0.1 mg/L). For ventilation parameter, filter container vessels with a 50-µm microporous polypropylene membrane (Pardis®) were used. Based on the results, an increase in calcium chloride content of the MS standard medium prevented hyperhydricity in the UCB1 rootstock, whereas it increased STN, yellow leaves, decreasing the multiplication of shoots in the ‘Badami’ rootstock. The results also showed that increasing boric acid from 196 mg/L up to 291 mg/L decreased STN in the UCB1 rootstock and increased this disorder by 37% in the ‘Badami’ rootstock. Ventilation showed no significantly reducing effect on the percentage of STN in the regenerated shoots of the ‘Badami’ rootstock, whilst it decreased the STN of the ‘UCB1’ rootstock to the lowest percentage. For the ‘Badami’ rootstock, CaNO3.4H2O at 196 mg/L led to the highest proliferation rate, shoot height, shoot diameter, and leaf number, but for the ‘UCB1’ rootstock, an increase in the concentration of CaNO3.4H2O up to 291 mg/L under ventilated conditions resulted in an increase in proliferation, shoot height, and shoot diameter.