50 Icho 2018: Preparatory Problems: Theoretical
50 Icho 2018: Preparatory Problems: Theoretical
50 Icho 2018: Preparatory Problems: Theoretical
Bratislava, SLOVAKIA
Prague, CZECH REPUBLIC
www.50icho.eu
Table of Contents
Problem 1. Synthesis of hydrogen cyanide ................................................................................. 2
Problem 2. Thermochemistry of rocket fuels............................................................................... 3
Problem 3. HIV protease ............................................................................................................ 6
Problem 4. Enantioselective hydrogenation ................................................................................ 8
Problem 5. Ultrafast reactions .................................................................................................... 9
Problem 6. Kinetic isotope effects ............................................................................................ 13
Problem 7. Designing a photoelectrochemical cell.................................................................... 14
Problem 8. Fuel cells ................................................................................................................ 16
Problem 9. Acid-base equilibria in blood ................................................................................... 18
Problem 10. Ion exchange capacity of a cation exchange resin................................................ 20
Problem 11. Weak and strong cation exchange resin ............................................................... 21
Problem 12. Uranyl extraction .................................................................................................. 22
Problem 13. Determination of active chlorine in commercial products ...................................... 24
Problem 14. Chemical elements in fireworks ............................................................................ 25
Problem 15. Colours of complexes ........................................................................................... 27
Problem 16. Iron chemistry ....................................................................................................... 29
Problem 17. Cyanido- and fluorido-complexes of manganese .................................................. 34
Problem 18. The fox and the stork ............................................................................................ 37
Problem 19. Structures in the solid state .................................................................................. 39
Problem 20. Cyclobutanes ....................................................................................................... 41
Problem 21. Fluorinated radiotracers........................................................................................ 42
Problem 22. Where is lithium? .................................................................................................. 44
Problem 23. Synthesis of eremophilone ................................................................................... 45
Problem 24. Cinnamon all around ............................................................................................ 46
Problem 25. All roads lead to caprolactam ............................................................................... 48
Problem 26. Ring opening polymerizations (ROP).................................................................... 50
Problem 27. Zoniporide ............................................................................................................ 52
Problem 28. Nucleic acids ........................................................................................................ 54
𝐾(𝑇 2 ) Δr 𝐻m 1 1 Δr 𝐻m 1 1
ln ( )=− ( − ) ⇒ 𝐾(𝑇2 ) = 𝐾(𝑇1 )exp [− ( − )]
𝐾(𝑇1 ) 𝑅 𝑇2 𝑇1 𝑅 𝑇2 𝑇1
275.6 × 103 J mol−1 1 1
𝐾(1 600K) = 8 143 × exp [− ( − )] = 32 407
8.314 J mol−1 K −1 1 600 K 1 500 K
The result is in accordance with the Le Chatelier’s principle because the reaction is
endothermic and therefore an increase in temperature shifts the equilibrium toward products
(in other words, the equilibrium constant increases).
1.4 The equilibrium constant of the reaction in the Andrussow process decreases with
an increase in temperature because the reaction is exothermic.
2.3 Calculation of the standard molar reaction enthalpies, related to one mole of hydrazine
derivatives:
ΔreH°0M = ΔreH0M − 2 ΔvapHH2O = −620.28 kJ mol−1
ΔreH°1M = ΔreH1M − 3 ΔvapHH2O = −1 306.59 kJ mol−1
ΔreH°2M = ΔreH2M − 4 ΔvapHH2O = −1 982.96 kJ mol−1
Calculation of the standard molar reaction entropies, related to one mole of hydrazine
derivatives:
ΔreS°0M = (2 SH2O,l + 3/2 SN2 − 1/2 SN2O4 − S0M) = 200.67 J K−1 mol−1
ΔreS°1M = (SCO2 + 3 SH2O,l + 9/4 SN2 − 5/4 SN2O4 − S1M) = 426.59 J K−1 mol−1
ΔreS°2M = (2 SCO2 + 4 SH2O,l + 3 SN2 − 2 SN2O4 − S2M) = 663.69 J K−1 mol−1
Calculation of standard molar reaction Gibbs energies:
ΔreG°0M = ΔreH°0M − T° × ΔreS°0M = −680.11 kJ mol−1
ΔreG°1M = ΔreH°1M − T° × ΔreS°1M = −1 433.77 kJ mol−1
ΔreG°2M = ΔreH°2M − T° × ΔreS°2M = −2 180.84 kJ mol−1
Estimation of the equilibrium constants for combustion reactions:
Ki = exp(−ΔreG°i / (RT°))
K0M = e274.37 ≈ 1 × 10119
K1M = e578.41 ≈ 1 × 10251
K2M = e879.79 ≈ 1 × 10382
Equilibrium constants are practically equal to infinity; the equilibrium mixture of the outlet
gases contains reaction products only.
2.4 All reactions increase the number of the moles of gaseous species, so increasing the
pressure will suppress the extent of the reaction (though negligibly for such values of K). All
reactions are strongly exothermic, so increasing the temperature will affect the equilibrium
in the same direction as pressure.
2.5 Summarizing the chemical equation representing the fuel mixture combustion:
N2H4 (l) + N2H3CH3 (l) + N2H2(CH3)2 (l) + 3.75 N2O4 (l) → 6.75 N2 (g) + 9 H2O (g) + 3 CO2 (g)
– (Δre 𝐻0M + Δre 𝐻1M + Δre 𝐻2M ) = (6.75 𝐶𝑝(N2 ) + 9 𝐶𝑝(H2 O) + 3 𝐶𝑝(CO2 ) )(𝑇f − 𝑇0 ), solve for Tf
Tf = 4 288.65 K
2.6 Burning of 1,1-dimethylhydrazine with oxygen can be expressed as:
N2H2(CH3)2 (l) + 4 O2 (g) → N2 (g) + 2 CO2 (g) + 4 H2O (g)
– Δcomb 𝐻2M = (𝐶𝑝(N2 ) + 4 𝐶𝑝(H2 O) + 2 𝐶𝑝(CO2 ) )(𝑇x − 𝑇0 ) , solve for Tx
Tx = 5 248.16 K
Note 1: ΔS° and ΔH° may also be obtained from a fit of KD or KA, without considering ΔG°.
Here, a straight line would be fitted to the dependence:
ln KA = −lnKD = ΔS° / R − ΔH° / R × 1/T.
Note 2: It is evident that the binding is entropy-driven for all the inhibitors. The entropic gain
stems from the changes in the flexibility of both the protease and the inhibitors, and also
involves solvent effects. However, a molecular picture of those changes is rather complex.
3.4 The slowest dissociation is observed for the compound with the smallest dissociation rate
constant, i.e. Saquinavir.
3.5 Using the relation for the dissociation constant KD = kD / kA and the data at 25 °C, we obtain
for Amprenavir: kA = kD / KD = 4.76 × 10−3 s−1 / (0.725 × 10−9 mol L−1) = 6.57 × 106 L mol−1 s−1.
Analogous calculations performed for the other inhibitors yield the following numerical
results. The fastest association is exhibited by the compound with the largest association
rate constant, i.e. Amprenavir.
3.6 The Arrhenius equation for the rate constant reads k = A × exp[−ΔG‡ / RT]. For two known
rate constants of dissociation k1 and k2 determined at temperatures T1 and T2, respectively,
we obtain a system of two equations,
k1 = A × exp[−ΔG‡ / RT1]
k2 = A × exp[−ΔG‡ / RT2],
from which the activation energy of dissociation results as ΔG‡ = (ln k1 / k2) / (1 / RT2 − 1 / RT1).
Numerically, the activation energy is 8.9 kJ mol−1 for Lopinavir, 32.6 kJ mol−1 for Amprenavir
(which has the fastest association rate constant) and 36.8 kJ mol−1 for Saquinavir (which
has the lowest dissociation rate constant).
3.7 No, these are two different compounds. The strongest protease binder is not the same
inhibitor as the one with the slowest dissociation. This observation may seem
counter-intuitive if the distinction between thermodynamics (here, the strength of binding
expressed by the equilibrium constant) and kinetics (the rate of binding represented by the
rate constant or activation energy for dissociation) is not understood properly. While the
equilibrium constant of dissociation captures the thermodynamic stability of the respective
protein–inhibitor complex, the rate constant describes the kinetics of the process. These
are two different sets of properties and they only become related if the rates of both
dissociation and association are considered, KD = kD / kA.
𝑅−𝑆 𝑘𝑅 𝑅 95 𝑘𝑅
4.2 90% 𝑒𝑒 = => = = = 19 => 𝑘𝑆 = = 1.3 × 10–6 s–1
𝑅+𝑆 𝑘𝑆 𝑆 5 19
4.3 From the previous question; at −40 °C 𝑘𝑅 = 19 × 𝑘𝑆 . Substitute from the Arrhenius equation:
−𝐸a (𝑅) −𝐸a (𝑆)
𝐴×𝑒 𝑅×𝑇 = 19 × 𝐴 × 𝑒 𝑅×𝑇 Therefore:
𝐸a (𝑅) = 𝐸a (𝑆) − 𝑅 × 𝑇 × ln(19) = 74 kJ mol–1
𝑅−𝑆 𝑘𝑅 𝑅 99.5
4.4 99% 𝑒𝑒 = => = = = 199
𝑅+𝑆 𝑘𝑆 𝑆 0.5
𝐸a (𝑆) − 𝐸a (𝑅)
𝑇= = 130 K
𝑘
𝑅 × ln ( 𝑅 )
𝑘𝑆 𝑇
At this temperature, the reaction is likely to be really slow which would prevent its actual use.
4.5 The main difference is that (S)-CAT will provide the (S)-product. We will do all the calculations
for (R)-CAT and just invert the sign at the end. It should be noted that the amount of catalyst
does not influence the enantiomeric excess; it only accelerates the reaction.
From equation (‡):
𝐸a(𝑆)−𝐸a(𝑅)
𝑘
( 𝑅) = 𝑒 𝑅×𝑇 = 12.35 => ee = 85%
𝑘𝑆 𝑇
5.4
𝑑[D2 O]
= 𝑘1 [D+ ][OD− ] − 𝑘2 [D2 O]
𝑑𝑡
5.5 We start from the rate equation derived in 5.4
𝑑[D2 O]
= 𝑘1 [D+ ][OD− ] − 𝑘2 [D2 O]
𝑑𝑡
All concentrations can be expressed via the quantity x
𝑑𝑥
− = 𝑘1 (([D+ ]eq + 𝑥) × ([OD− ]eq + 𝑥)) − 𝑘2 ([D2 O]eq − 𝑥)
𝑑𝑡
Expanding the right hand side of the equation, we get
𝑑𝑥
− = 𝑘1 [D+ ]eq [OD− ]eq + 𝑥 𝑘1 [OD− ]eq + 𝑥 𝑘1 [D+ ]eq + 𝑘1 𝑥 2 − 𝑘2 [D2 O]eq + 𝑥 𝑘2
𝑑𝑡
Using the equality of the backward and forward reaction rates at equilibrium
𝑘1 [D+ ]eq [OD− ]eq = 𝑘2 [D2 O]eq
and neglecting the (small) quadratic term x2, we can rewrite the equation as
𝑑𝑥
− = 𝑥(𝑘1 [D+ ]eq + 𝑘1 [OD− ]eq + 𝑘2 )
𝑑𝑡
5.6 The relaxation time is given as
1
= 𝑘1 ([D+ ]eq + [OD− ]eq ) + 𝑘2
𝜏
At equilibrium, the backward and forward reaction rates are the same. The concentration of
heavy water [D2 O]eq is given as
𝜌 × 𝑉 × 1 000 1 107
[D2 O]eq = = = 55.3 mol dm−3
𝑉 × 𝑀𝑟 (D2 O) 20.03
𝑘2 [D+ ]eq [OD− ]eq 𝐾w (D2 O) 1.35 × 10−15
𝐾= = = = = 2.44 × 10−17
𝑘1 [D2 O]eq [D2 O]eq 55.3
The relaxation time is then given as
1
= 𝑘1 (𝐾 + [D+ ]eq + [OD− ]eq )
𝜏
Substituting the values of all quantities
1
= 𝑘1 (2.44 × 10−17 + 3.67 × 10−8 + 3.67 × 10−8 )
0.162 × 10−3
we get
1
= 2𝑘1 × 3.67 × 10−8
0.162 × 10−3
𝑘1 = 8.41 × 1010 dm3 mol−1 s−1
We get k2 from the equilibrium constant K
𝑘2 = 𝑘1 𝐾 = 2.05 × 10−6 s−1
5.7 The pH before irradiation is calculated from the dissociation constant of the ground state of
6-hydroxynaphthalene-2-sulfonate.
[H + ][A− ]
𝐾a = = 10−9.12 = 7.59 × 10−10
[HA]
where [A− ] is the concentration of 6-oxidonaphthalene-2-sulfonate and [HA] is the
concentration of 6-hydroxynaphthalene-2-sulfonate.
The concentration of [H + ] is equal to the concentration of [A− ] due to electroneutrality and
can be denoted as y. The equilibrium concentration of the undissociated acid [HA] is 𝑐 − 𝑦,
where 𝑐 is the analytical concentration of the acid. The equilibrium constant is then given
as
𝑦2
𝐾a =
𝑐−𝑦
Because the amount of dissociated acid is very small, we can neglect y in the denominator
𝑦2
𝐾a =
𝑐
From which
𝑥𝑦
𝐾a = = 10−9.12 = 7.59 × 10−10
𝑐
where we assumed 𝑐 − 𝑐 ∗ − 𝑦 ≈ 𝑐 in the denominator of the last equation. These three
equations constitute a system of equations from which we get
𝑥 3 + 𝐾a∗ 𝑥 2 − (𝐾a 𝑐 + 𝐾a∗ 𝑐 ∗ )𝑥 − 𝐾a 𝐾a∗ 𝑐 = 0
or
𝑥 3 + 0.022𝑥 2 − 1.21 × 10−7 𝑥 − 8.35 × 10−14 = 0
We can solve this equation e.g. with any on-line solver of cubic equations
𝑥 = 6.12 × 10−6 mol dm−3
Which corresponds to
pH = −log (6.12 × 10−6 ) = 5.21
It is possible to avoid solving cubic equations by an iterative solution. In the first step, we
assume that 𝑦 ≈ 0. The equation for 𝐾a∗ then transforms to
𝑥 𝑦∗ 𝑦∗2
𝐾a∗ = ≈
𝑐∗ − 𝑦∗ 𝑐∗ − 𝑦∗
y* can be calculated from the quadratic equation
𝑦 ∗ 2 + 𝐾a∗ 𝑦 ∗ − 𝐾a∗ 𝑐 ∗ = 0
−0.022 + √0.0222 + 4 × 5.5 × 10−6 × 0.022
𝑦∗ = = 5.5 × 10−6 mol dm−3
2
Next, we update the concentration of the anion in the ground state y from the corresponding
equilibrium constant
(𝑦 ∗ + 𝑦) 𝑦
𝐾a =
𝑐
From which y can be obtained by solving a quadratic equation
𝑦 2 + 𝑦 𝑦 ∗ − 𝐾a 𝑐 = 0
This again leads to the quadratic equation
𝑦 2 + 𝑦 × 5.5 × 10−6 − 7.59 × 10−10 × 5.0 × 10−3 = 0
−5.5 × 10−6 + √(5.5 × 10−6 )2 + 4 × 7.59 × 10−10 × 5 × 10−3
𝑦=
2
𝑦 = 6.2 × 10−7 mol dm−3
The concentration of [H + ] is
𝑥 = 𝑦 ∗ + 𝑦 = 5.5 × 10−6 + 6 × 10−7 = 6.1 × 10−6 mol dm−3
pH = − log(6.1 × 10−6 ) = 5.21
We could now repeat the whole cycle: with the first estimate of x, we would get a new value
of 𝑦 ∗ and continue with these new values of y and x until convergence is reached. At the
level of precision in our calculations, the concentration is already converged in the first
iteration. Generally, more iterative cycles would be needed.
𝜈 1 𝑘 1 968
Wavenumber: 𝜈̃ = = √ = √ = 4.159 × 105 m−1
𝑐 2𝜋𝑐 𝜇 2𝜋 × 2.9979 × 108 1.578 × 10−27
𝜈̃ = 4 159 cm−1
1 1
Energies: 𝐸0 = 2
ℎ × 𝑐 × 𝑣̃ = 2 × 6.6261 × 10−34 × 2.9979 × 108 × 4.159 × 105 =
= 4.13 × 10−20 J
3
𝐸1 = ℎ × 𝑐 × 𝑣̃ = 1.24 × 10−19 J
2
6.2 We are going to determine the atomic mass A of the lighter isotope of the element X.
2 × (𝐴 + 2)
𝑣̃1 2 𝜇2 2 × (𝐴 + 2) × (𝐴 + 1)
( ) = = 2+𝐴+2 =
𝑣̃2 𝜇1 1×𝐴 𝐴 × (𝐴 + 4)
𝐴+1
1 2 439.0 2 𝐴2 + 3 × 𝐴 + 2
( ) =
2 1 734.8 𝐴2 + 4 × 𝐴
A = 79.4 amu
A = 79; A + 2 = 81; X = Br
The second root of the quadratic equation 2.155, which would correspond to A = 2
and A + 2 = 4, is unphysical.
6.3 The difference of the activation energies Ea(H−C) − Ea(D−C) is equal to the negatively taken
difference of zero-point vibrational energies: − E0(H−C) + E0(D−C)
𝑘(C‒ H) 𝐸a (C‒ H) − 𝐸a (C‒ D) 𝐸0 (C‒ H) − 𝐸0 (C‒ D)
= exp (− ) = exp ( )
𝑘(C‒ D) 𝑘𝑇 𝑘𝑇
𝑘(C‒ H) ℎ𝑐
= exp ( (𝑣̃(C‒ H) − 𝑣̃(C‒ D)))
𝑘(C‒ D) 2𝑘𝑇
𝑘(C‒ H)
= 6.81
𝑘(C‒ D)
6.4 E2 elimination. The value of the kinetic isotope effect of 6.5 indicates that the C−H/D bond
is broken in the rate-determining step of the reaction.
6.5 For a tertiary substrate, we can expect E1 elimination, where the C−H/D bond is not broken
during the rate-determining step. Therefore, we observe only a small secondary kinetic
isotope effect with the kH / kD ratio slightly larger than 1.0.
7.3 Standard potential E°(C) is more positive than E°(B), hence substance C is a stronger
oxidizer and will therefore oxidize substance B (a), and the standard reaction potential 𝐸𝑟°
will be 0.288V (b):
𝐂ox + 2e− → 𝐂red 𝐸C° = +0.824 V
𝐁red → 𝐁ox + 3e− 𝐸B∗ = −0.536 V
7.4 Reaction E is pH-dependent and its potential drop is 52 mV per pH unit (as can be
calculated from formula derived in question 7.2: z = 1, n = 1, T = 262 K). The reaction
potential Er = EE – ED is calculated from the equilibrium constant:
𝑅𝑇ln(𝐾) 8.3145 × 262 × ln(2.56 × 105 )
𝑅𝑇ln(𝐾) = 𝑧𝐹𝐸𝑟° ⇒ = ≅ 0.28 𝑉
𝑧𝐹 1 × 96 485
1,0
ED
0,8
EE
pH = 2.31, dE = 0.28 V
0,4
0,2
D will oxidize E at pH 7.7 - 13
0,0
0 1 2 3 4 5 6 7 8 9 10 11 12 13
pH
7.6 Only materials G and I can be used to catalyze the given reaction, because their HOMOs
lie below Eox and their LUMOs are higher than Ered. While material G can be irradiated only
by UV light with a wavelength lower than 388 nm, material I can be irradiated by either
visible or UV light, because the maximal wavelength that can be used to overcome the
energy difference of 2 eV is equal to 620 nm.
ℎ𝑐 6.626 × 10−34 × 3 × 108
𝜆 (𝐆) = = ≅ 388 × 10−9 m = 388 nm
𝑞𝑒 𝐸[eV] 1.602 × 10−19 × 3.2
Δ𝑓 𝐺°(O2 (g)) = 0
Δ𝑟 𝐺° = (8Δ𝑓 𝐺°(CO2 (g)) + 10Δ𝑓 𝐺°(H2 O(l))) − (2Δ𝑓 𝐺°(C4 H10 (g)) + 13Δ𝑓 𝐺°(O2 (g))) =
= (8 × (−393.9) + 10 × (−237.3)) − (2 × (−17) + 13 × 0) = −5 490 kJ mol−1
Δ𝑟 𝐺° −5 490 × 103
𝐸° = − =− = 1.09 V
|𝑧|𝐹 52 × 96 485
8.6 The ideal thermodynamic efficiency is determined as:
Δ𝑟 𝐺° −5 490.2
𝜂𝑡 = = = 0.954
Δ𝑟 𝐻° (8 × (−393) + 10 × (−286)) − (2 × (−126) + 13 × 0)
8.7 It is the same as in the previous answer. The overall reaction is the same.
8.8 Anode: CH3OH + H2O → 6 H+ + 6 e− + CO2
Cathode: O2 + 4 H+ + 4 e− → 2 H2O
Overall: 2 CH3OH + 3 O2 → 2 CO2 + 4 H2O
8.9 Nernst equation
𝑐H O 4 𝑝CO 2
𝑅𝑇 ( 𝑐°2 ) ( 𝑝° 2 )
𝐸 = 𝐸° − ln
12𝐹 𝑐CH OH 2 𝑝O 3
( 3 ) ( 2)
𝑐° 𝑝°
Any answer with correctly expressed activities (e.g. using molar fractions) is assumed to be
correct.
8.10 We use van ’t Hoff equation, in which we substitute EMFs for equilibrium constants. We
obtain reaction enthalpy and Gibbs free energy changes, which we use to calculate the
entropy change:
𝐾(𝑇 ) Δ𝑟 𝐻° 1 1 |𝑧|𝐹𝐸° |𝑧|𝐹𝐸°(𝑇2 ) |𝑧|𝐹𝐸°(𝑇1 ) Δ𝑟 𝐻° 1 1
ln 𝐾(𝑇2 ) = 𝑅
(𝑇 − 𝑇 ) ; ln 𝐾(𝑇) = 𝑅𝑇
→ 𝑅𝑇2
− 𝑅𝑇1
= 𝑅
(𝑇 −𝑇)
1 1 2 1 2
log[HCO− −3
3 ] = 7.4 − 6.1 + log(1.219 × 10 )
log[HCO−
3 ] = 7.4 − 6.1 − 2.9
log[HCO−
3 ] = −1.6
[HCO−
3 ] = 24 mmol dm
−3
Δ𝑟 𝐻 1 1
ln𝐾2 − ln𝐾1 = − ( − )
R 𝑇2 𝑇1
Δ𝑟 𝐻 1 1
ln𝐾310.15 K − ln𝐾298.15 K = − ( − )
R 310.15 298.15
Δ𝑟 𝐻
−14.05 + 14.62 = 1.30 × 10−4 ×
8.314
Δ𝑟 𝐻 = 36.88 kJ mol−1
Then, that same equation is used to calculate the pKa at 20 °C:
Δ𝑟 𝐻 1 1
ln𝐾2 − ln𝐾1 = − ( − )
R 𝑇2 𝑇1
36 520 1 1
ln𝐾293.15 + 14.62 = − ( − )
8.314 293.15 298.15
ln𝐾293.15 = −14.87
𝐾293.15 = 3.48 × 10−7
p𝐾a (293.15 K) = 6.46
Henry’s solubility of CO2 is recalculated in an analogous way:
−Δ𝐻vap 1 1
cp cp ( − )
𝐻T2 = 𝐻T1 × 𝑒 R T2 T1
1 1
cp 2 400 × ( − )
𝐻293.15 K = 2.3 × 10−4 × 𝑒 293.15 310.15
cp
𝐻293.15 K = 3.6 × 10−4 mol m−3 Pa−1
Finally, the pH of blood at 20 °C is obtained using these recalculated values:
[HCO−
3]
pH = p𝐾a + log cp
H × 𝑝(CO2 )
0.024
pH = 6.46 + log
3.6 × 10−7 × 5 300
pH = 7.57
9.4 In a working muscle, high oxygen supply is ensured by lowering the affinity towards oxygen
in an acidic environment. In lungs, by contrast, CO2 is liberated from haemoglobin in red
blood cells, which, in turn, binds oxygen with a greater affinity.
Ion exchange capacities of the strong and weak ion exchange resins (V0 = 4 cm3)
𝑛2 + 𝑛3 1.88 + 6.25
𝑄V,SO3H = 𝑄V,strong = 𝑉0
= 4
= 2.033 mmol cm−3
𝑛1 − 𝑛3 8.90 − 6.25
𝑄V,COOH = 𝑄V,weak = = = 0.662 mmol cm−3
𝑉0 4
Using 2,UO , 𝐾D,UO2 A2 , 𝐾a,HA and i for [UO2(OH)i]2–i complexes, 𝐷c,UO2+ can be expressed as
2 A2 2
𝐾D,UO2 A2
𝐷c,UO2+ = 2
2 𝐾D,HA [H + ]2aq
1+ × × (1 + ∑4𝑖=1 𝛽𝑖 × [OH − ]𝑖aq )
2,UO2A2 × 𝐾a,HA
2
[HA]2org
Casting this value, [HA]org = 3.41 × 10−3 mol dm−3 and all the necessary constants into the
expression for the distribution ratio, we obtain
𝐷c,UO2+
2
= 5.61
12.2 For the conditions of [H+] = 10−pH = 5.01 × 10−11 mol dm−3, using the same calculation
procedure, we get
[HA]org = 1.50 × 10−5 mol dm−3
𝐷c,UO2+
2
= 1.22 × 10−4
1 0.250
𝑤(NaClO) = 0.0503 × 0.01015 × × 74.44 × × 100% = 4.44%
2 1.070 × 0.010 × 0.010
15.2 The wavenumber of 20 300 cm−1 corresponds to the wavelength of 493 nm which means
the absorption of the blue-green light. The colour of the complex is the complementary one,
i.e. orange-red.
15.3 The complex absorbs visible light in the range from 493 to 575 nm, i.e. blue-green to
yellow-green. The complex is purple.
15.4 Electron configurations:
15.5 Equations:
(1) 2 CoCl2 + 3 F2 → 2 CoF3 + 2 Cl2
(2) CoF3 + 3 KF → K3[CoF6]
(3) 4 CoF3 + 2 H2O → 4 HF + 4 CoF2 + O2
15.6 Equation:
(4) 4 CoCl2 + 4 NH4Cl + 20 NH3 + O2 → 4 [Co(NH3)6]Cl3 + 2 H2O
15.7 The wavenumbers correspond to the wavelengths of 475 nm (blue light) and 340 nm
(UV region). The second band has no effect on the observed colour and the complex is
orange. Luteus means yellow in Latin (it refers to the yellow-orange colour of the complex).
15.8 Due to their position in the spectrochemical series, fluoride ions (F−) cause only small
splitting, which leads to a high-spin configuration with four unpaired electrons. Ammonia
molecules (NH3) cause greater splitting, which means that all the electrons in the t2g orbitals
pair up and a low-spin configuration is formed
15.10 The wavenumbers correspond to the wavelengths of 877 nm (IR region) and 690 nm (red
light). The first band has no effect on the observed colour and the complex is
blue-green.
16.3
(a) The individual zone labels follow the successive uptake of electrons (from up to down) and
hydroxide anions as ligands (from left to right). The identity of any zone can be checked by
comparing the appropriate borderline definitions. The answers are displayed in Figure 3.
Figure 3. Pourbaix diagram for dissolved iron species and metallic iron.
It should be noted that this type of Pourbaix diagram would be valid only in highly diluted
solutions of iron species. The increase in concentration will lead to the precipitation of
insoluble (first ferric, then ferrous) oxides/hydroxides as well as the formation of polynuclear
hydroxido complexes.
(b) Each borderline is drawn with the assumption that the activities of both participating species
are equal. The equations which refer to lines 11 and 17, respectively, can be derived from
the corresponding forms of the Nernst–Peterson equation (10) and (11) assuming the
equilibrium conditions [Fe3+] = [Fe2+] and [Fe2+] = a(Fe,s). Because there is no term which
depends on pH, the results are horizontal constant lines numerically equal to the standard
redox potentials, see Figure 3.
line 11 (Fe3+/Fe2+): E = E° − 0.059 × log([Fe2+] / [Fe3+]), thus E = 0.77 (10)
line 17 (Fe2+/Fe): E = E° − (0.059 / 2) × log(a(Fe,s) / [Fe2+]), thus E = −0.44 (11)
The conditions for lines 2 and 5 are [Fe3+] = [Fe(OH)2+] and [Fe(OH)3] = [Fe(OH)4−],
respectively, i.e. the expressions imply constant lines again, but in this case vertical ones,
since there is no connection with the redox potential. The analytical expressions are
represented by equations (12) and (13).
line 2 (Fe3+/[Fe(OH)]2+): pH = pKw − logβ1, thus pH = 2.2 (12)
line 5 ([Fe(OH)3]/[Fe(OH)4]−): pH = pKw + logβ3 − logβ4, thus pH = 9.6 (13)
(c) The analytic expression of line 6 (14) is also derived from the Nernst–Peterson equation
under the assumption [FeO42−] = [Fe3+].
line 6 (FeO42−/Fe3+): E = E° − (0.059 / 3) × log{[Fe3+] / ([FeO42−] × [H+]8)},
thus E = 1.90 − 0.157 × pH (14)
The first coordinate of the intersection of lines 2, 6 and 7 is obviously pH = 2.2. The second
coordinate can be calculated by substituting for pH = 2.2 in equation (14), i.e. E = 1.55.
Although it was not required to derive the expressions for all the lines, they are given in the
following list for completeness, (15)–(28), and shown in Figure 3.
line 1 (Fe2+/[Fe(OH)]+): pH = 9.5 (15)
line 3 ([Fe(OH)]2+/[Fe(OH)2]+): pH = 3.5 (16)
line 4 ([Fe(OH)2]+/[Fe(OH)3]): pH = 6.3 (17)
line 7 (FeO42−/[Fe(OH)]2+): E = 1.86 − 0.138 × pH (18)
line 8 (FeO42−/[Fe(OH)2]+): E = 1.79 − 0.118 × pH (19)
line 9 (FeO42−/[Fe(OH)3]): E = 1.66 − 0.098 × pH (20)
line 10 (FeO42−/[Fe(OH)4]−): E = 1.48 − 0.079 × pH (21)
line 12 ([Fe(OH)]2+/Fe2+): E = 0.90 − 0.059 × pH (22)
line 13 ([Fe(OH)2]+/Fe2+): E = 1.11 − 0.118 × pH (23)
line 14 ([Fe(OH)3]/Fe2+): E = 1.48 − 0.177 × pH (24)
line 15 ([Fe(OH)3]/[Fe(OH)]+): E = 0.92 − 0.118 × pH (25)
line 16 ([Fe(OH)4]−/[Fe(OH)]+): E = 1.48 − 0.177 × pH (26)
line 18 ([Fe(OH)]+/Fe): E = −0.16 − 0.030 × pH (27)
line 19 ([Fe(OH)4]−/Fe): E = 0.38 − 0.079 × pH (28)
(d) Ferrate ion can only be produced in a very basic solution by strong oxidizing agents
(stronger than elemental oxygen under these conditions), e.g. hypochlorite (32). This will
overcome line 10 and produce some ferrate ions.
2 [Fe(OH)4]− + 3 ClO− + 2 OH− → 2 FeO42− + 3 Cl− + 5 H2O (32)
Other possibilities are for example oxidation in a mixture of melted sodium nitrate with
sodium hydroxide or analogous reactions in melts.
16.4 From the viewpoint of "Hard and Soft Acid-Base" (HSAB) theory, Fe2+ is an intermediary
hard, Fe3+ hard and imaginary "Fe6+" would be an extremely hard acid (the hardness
correlates with the ionic radii and the surface charge density). Hard acids prefer hard bases
and soft acids prefer soft bases. In aqueous solutions, H2O, OH− and O2− are available
(although the oxide ion is not present in water at all, it can be at least formally "extracted"
by e.g. a precipitation process). Therefore, the tendency to attract harder OH− ions is higher
for Fe3+ than for Fe2+ which leads to a higher proton acidity of the hexaaquaferric ion and
easier hydrolysis to the corresponding hydroxido species. For the Fe6+ centre, only
a similarly extremely hard base is acceptable, i.e. O2− ion (although only formally, since
there are covalent bonds between Fe(VI) and O atoms). Therefore, iron in the oxidation
state +6 exists only in an anionic form.
17.5 Equations:
(2) 4 Mn2+ + O2 + 24 CN− + 2 H2O → 4 [Mn(CN)6]3− + 4 OH−
(3) 2 [Mn(CN)6]4− + H2O2 → 2 [Mn(CN)6]3− + 2 OH−
(4) 3 MnCl2 + HNO3 + 3 H3PO4 → 3 MnPO4↓ + NO + 6 HCl + 2 H2O
(5) MnPO4 + 6 KCN → K3[Mn(CN)6] + K3PO4
17.6 Diagram – low-spin configuration d4:
17.9 Sharing 1 bridging F atom between 2 neighbouring octahedral units corresponds to the
stoichiometry [MnF5]2−:
17.10 The stoichiometry [MnF4]− could be achieved in a chain structure having 2 bridging F
atoms between 2 neighbouring octahedral units:
17.12 Since the magnitude of splitting in tetrahedral crystal field is about a half of octahedral
4
(exactly Δtet = − 9 Δoct; the negative sign refers to the inverse order of split d-orbitals with
respect to the octahedral crystal field), it is always lower than electron pairing energy
(Δtet < P) which leads to high-spin configurations in tetrahedral complexes.
Diagram – high-spin configuration d5:
Pebbles
18.4 Radius: r = 10 / 6 = 1.667 cm
18.5 Number of layers: N = 50 / (2 × 1.667) = 15
18.6 Number of spheres: n = 15 × 7 = 105
4 4
18.7 The volume of 105 spheres: 𝑉 = 105 × 𝜋𝑟 3 = 105 × 𝜋 × (1.667)3 = 2 036 cm3
3 3
The distance of the first and the last layer from the bases of the cylinder will be at minimum
equal to r. Thus the maximum number of layers:
N = (50 − 2 × r) / h + 1 = (50 − 2 × 1.667) / 2.722 + 1 = 18.14 18 layers
18.10 The total number of spheres: each of the 9 odd layers contains 7 spheres, each of the
9 even layers contains 3 spheres, the total number is:
n = 9 × 7 + 9 × 3 = 90
4 4
18.11 The volume of 90 spheres: 𝑉 = 90 × 3 𝜋𝑟 3 = 90 × 3
𝜋 × (1.667)3 = 1 745 cm3
Sand
18.13 The situation corresponds to the theoretical maximum possible space filling by spheres
𝜋
known as “close-packing of equal spheres”. The limiting fraction is = 0.7405,
3√2
i.e. 74.05 %. There are many ways to derive this ratio. The derivation from a face centered
cubic (fcc) elementary cell is shown.
The lattice constant 𝑎 is 2 × 𝑟 × √2 . Then the volume of the elementary cell is:
𝑉cell = 𝑎3 = 16√2 × 𝑟 3
The number of spheres belonging to the elementary cell is:
1 1
𝑛 =8× (spheres in vertices) + 6 × (speheres in the centers of faces) = 4
8 2
Thus the fraction volume occupied by the spheres is:
4 16
𝑉 =4× 𝜋𝑟 3 = 𝜋𝑟 3
3 3
4
𝜋𝑟 3 )
(4 × 𝜋
𝑓= 3 = = 0.7405, i. e. 74.05%
16√2 × 𝑟 3 3√2
Note that the two carbon atoms marked with a double asterisk (**) are pseudo-asymmetric.
They have two constitutionally identical ligands which differ in configuration.
20.3
20.4
21.5
21.6
21.7
23.3
24.2 Direct UV irradiation (313 nm, acetonitrile). A conformationally mobile biradical is formed.
Under these conditions, B and A are obtained in a 79 : 21 ratio.
24.4
24.5
24.6 The carboxylic acid functional group reacts with DCC to form an O-acylisourea, which
serves as the reactive intermediate in reactions with nucleophiles (e.g. alcohols or amines)
in acyl nucleophilic substitutions.
25.2 d)
25.3
25.4
25.5 Gas E (NOCl) is orange. Therefore, the optimal wavelength would be below 530 nm (green
and blue light).
25.6 Beckmann rearrangement.
26.2
26.3
26.6
26.7
26.8
26.9 A single wrong enantiomer of an amino acid in the protein structure causes loss of activity.
Glycine is not chiral, so there are 129 − 12 = 117 chiral amino acids in lysozyme. The overall
yield is (1/2)117 × 100% = 6.02 × 10−34 %.
Theoretically, in the “world behind the mirror” the all-D-protein would be active against the
all-chiral reversed proteoglycan. However, this does not meet the condition that only the
enzyme digesting native peptidoglycan is considered functional.
26.10 The amount of enzyme (120 mg = 0.000 12 kg) obtained with 6.02 × 10−34 % yield (see the
the answer in 26.9) would require the production of 0.00012 / ((1/2)117) = 1.99 × 1031 kg of
material. As the Earth weighs 5.972 × 1024 kg, this corresponds to 1.99 × 1031 / 5.972 × 1024 =
= 3.34 × 106 times the mass of the Earth.
27.5
27.6 Mechanism 2
From a) the KIE is >> 1 which indicates that the C2–H bond is being cleaved during the rate
determining step (RDS). For Mechanism 1 the RDS would have to be E → 3, for
Mechanism 2 the RDS would be the concerted 2 → 3 transformation.
From b) we know that electron withdrawing groups (EWGs) on the heterocyclic core speed
up the reaction. This indicates that the RDS involves either buildup of negative charge on
the quinoline ring (e.g. by a nucleophilic attack) or loss of positive charge from the ring (e.g.
by deprotonation). In Mechanism 1, this is true for the 2 → E step (an electron rich
nucleophile adds to the quinoline core) but not for the E → 3 step (expulsion of a hydride
nucleophuge is disfavoured in the presence of EWGs). This contradiction disproves
Mechanism 1; therefore, the correct answer is Mechanism 2.
27.7 Hydrogen peroxide (H2O2)
27.8
𝑘H 𝐸0,H − 𝐸0,D
= exp ( )
𝑘D 𝑘𝐵 𝑇
1
𝐸0,H − 𝐸0,D = ℏ(𝜔H − 𝜔D )
2
𝑘
𝜔H/D = √
𝜇H/D
𝑚H/D/T 𝑚12C
𝜇H/D/T =
𝑚H/D/T + 𝑚 12C
𝑘
2𝑘𝐵 𝑇 ln ( H ) 1
𝑘D
√𝑘 = = 21.105 kg 2 s −1 ⟹ 𝑘 = 445.4 kg s −2
1 1
ℏ( − )
√𝜇H √𝜇D
𝑘H ℏ√𝑘 1 1
= exp ( ( − )) = 12.2(59)
𝑘T 2𝑘𝐵 𝑇 √𝜇H √𝜇T
27.9
28.2
28.3
Unknown sample (1) transmittance: T1 = 0.11
Known sample (2) transmittance: T2 = 1 − 0.57 = 0.43
Using Lambert–Beer law: −log10 T = ε l c
(−log10 T2) / c2 = (−log10 T1) / c1
c1 = c2 × (−log10 T1) / (−log10 T2) = 27 [μmol dm−3] (−log10 0.11) / (−log10 0.43) = 70.6 μmol dm−3
28.4
a) True. According to the Lambert–Beer law, absorbance is directly proportional to
concentration (as long as the cuvette length and the molar absorption coefficients are
assumed equal). The higher absorbance of DNA1 actually means that the concentration
of dsDNA1, which absorbs less radiation than ssDNA1, is lower.
b) False. Thermodynamic stability is described in terms of Tm, which can be read as the
inflexion point of the sigmoidal curve; here Tm(DNA1) ~ 315 K and Tm(DNA2) ~ 340 K.
c) False. Since Tm(DNA1) ~ 315 K and Tm(DNA2) ~ 340 K, dsDNA2 is more stable than
dsDNA1 with respect to their single-stranded forms.
28.6 Each position of the 8-nucleobase sequence can be occupied by one of the four
nucleobases (A, C, G, U). Hence, there are 48 = 65 536 theoretically possible
single-stranded octanucleotides.