S509 Alpha Analysis User's Manual

Model S509
Genie™ 2000
Alpha Analysis Option
9230875L V3.3
User’s Manual
Copyright 2013, Canberra Industries, Inc. All rights reserved.
The material in this document, including all information, pictures,

graphics and text, is the property of Canberra Industries, Inc. and
is protected by U.S. copyright laws and international copyrightT
conventions.
Canberra expressly grants the purchaser of this product the right

to copy any material in this document for the purchaser’s own use,
including as part of a submission to regulatory or legal authorities
pursuant to the purchaser’s legitimate business needs.
No material in this document may be copied by any third party, or

used for any commercial purpose, or for any use other than that
granted to the purchaser, without the written permission of
Canberra Industries, Inc.
Canberra Industries, 800 Research Parkway, Meriden, CT 06450

Tel: 203-238-2351 FAX: 203-235-1347 http://www.canberra.com
Canberra is an AREVA company.
The information in this document describes the product as

accurately as possible, but is subject to change without notice.
Printed in the United States of America.
For technical assistance, call our Customer Service Hotline at

1-800-255-6370 or email techsupport@canberra.com.
Genie is a trademark of Canberra Industries, Inc.

Table of Contents
Alpha Acquisition and Analysis . . . . . . . . . . . . . . . . . . . . 1

File Menu . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 1
Open Datasource . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 1
Close . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 3
Save . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 3
Save as . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 3
Data Plot . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 4
Print . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 5
Plot to Clipboard . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 5
Print Report Window . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 5
Export Report to PDF . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 5
Export Data Plot to PDF . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 6
Open Workspace . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 6
Save Workspace. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 6
Delete Workspace . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 7
Exit . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 7
MCA Menu . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 7
Acquire Start . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 7
Acquire Stop . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 7
Acquire Setup . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 7
Mode . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 7
Input Size . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 8
External Start/Stop . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 8
Time Preset . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 8
Computational Presets . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 9
Clear. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 9
Adjust . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 9
ADC . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 10
Stabilizer. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 11
Amplifier . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 13
High Voltage . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 15
Power Manager . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 16
Status. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 17
Advance . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 18
Load . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 18
Calibrate Menu . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 19
Setup . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 19
Energy Only Calibration . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 21
Energy Coefficients . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 22
Energy Full . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 23
By Certificate File . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 23
By Nuclide List . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 24
By Calibration File . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 27
By Entry . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 28
Energy Calibration – Full . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 29
Energy Recalibration . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 31
Energy Show. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 32
Efficiency . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 33
By Certificate File . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 33
By Nuclide List . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 34
By Calibration File . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 37
By Entry . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 38
Performing the Efficiency Calibration . . . . . . . . . . . . . . . . . . . . . . . . . . 39
Efficiency Show . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 40
Gain Evaluator . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 42
Zooming in on the Data . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 43
Context Menu . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 43
Source of True Energies . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 44
The Data Plot . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 45
Data Text Box . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 46
Fix File Gain. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 47
Save New CAL File . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 47
ReEvaluate. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 47
Auto Gain Adjust . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 48
Certificate File . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 49
ii Model S509 Alpha Analysis Option

Peak Search ASF . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 50
Single/Double Convergence . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 50
Iteration Limit . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 50
Preset Live Time . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 51
Percent Gain Shift Tolerance . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 51
Adjust Zero . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 51
QA Transfer Before/After . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 51
Execute . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 52
Save . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 52
Cancel . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 52
Auto Gain Adjust Status . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 53
Cancel/Abort . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 53
Print Report Now . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 53
Return to Setup/Save . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 54
General Information . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 54
Data Text Box . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 54
File Gain Adjust . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 56
Current Energy Calibration . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 56
Goal Calibration File . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 56
Goal Energy Calibration. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 57
Reanalyze After Adjustment . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 57
Load . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 57
Store . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 58
Display Menu . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 58
Expand . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 58
Scale . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 60
Compare . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 60
On . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 61
Off . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 62
VFS . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 62
ROIs . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 62
Display Preferences . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 63
Edit Colors. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 64
Peak Labeling . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 64
User's Manual - ICN 9230875L iii

Energy Units. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 66
Plot Mode . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 66
Update Information . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 67
Spectrum Labels . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 67
MCA View . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 67
Operations . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 71
Interactive NID . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 72
Analyze Menu . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 73
Execute Sequence . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 73
Abort Sequence . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 73
Analysis Phase Selection . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 74
Acquisition. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 74
Peak Locate . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 76
Unidentified Second Difference . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 76
User Specified . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 77
Library Locate (Simple) . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 78
Peak Area . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 80
Sum/Non-Linear Least Squares Fit Peak Area . . . . . . . . . . . . . . . . . . . . . . 80
Area Correction . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 83
Alpha Background Subtract . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 83
Standard Background Subtract . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 84
Reagent Correction . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 86
Efficiency Correction . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 87
Nuclide Identification . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 89
Tentative NID . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 89
NID . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 90
NID with Interference Correction . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 92
Detection Limits . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 94
Confidence Factor . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 95
Perform Variable ROI Width . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 95
Use Variable MDA Constants . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 96
Cascade Correction . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 96
Generate Report . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 96
Post NID Processing . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 96
iv Model S509 Alpha Analysis Option

Action Level Calculations . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 97
Control Recovery . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 98
Gain Evaluator. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 99
Reporting . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 100
Standard . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 101
Print Spectrum . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 102
QA Analysis . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 104
QA Transfer . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 104
QA Analyze . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 104
Save Datasource . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 105
Edit Menu . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 106
Sample Info. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 107
Analysis Sequence . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 108
Insert Step . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 109
Delete Step . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 109
Select Algorithm . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 110
Setup Algorithm . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 110
Sequence Preferences . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 111
Load . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 113
Store . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 113
Execute . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 113
Options Menu . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 114
Change Operator Name. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 114
Interactive NID . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 114
Strip. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 115
Smooth . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 116
Datasource Overview. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 117
Acquisition Data . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 117
Analysis Data . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 118
Calibration Data . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 119
Report Window. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 120
Datasource Menu . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 121
Next Group . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 121
Previous Group . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 121
User's Manual - ICN 9230875L v

Show All Datasources . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 122
Workspace Files . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 122
Example Alpha Spectroscopy Files. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 124
Index . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 127
vi Model S509 Alpha Analysis Option

Alpha Acquisition and Analysis
This operations reference for Genie™ 2000’s Model S509 Alpha Option lists all of its
commands and their functions by menu and submenu.
For a description of the application’s user interface, please refer to The Genie 2000
Tutorials Manual.
File Menu
The File menu lets you open, close or save a datasource, save it under another name
(save as), print or copy a plot of the current spectrum, print the contents of the Report
Window, open, save or delete workspace files, and exit the program.
Open Datasource
The Open Datasource command displays a dialog (Figure 1) which allows you to
open a datasource.
Figure 1 The Open Datasource Dialog
User's Manual - ICN 9230875L 1

Datasource
When the Detector radio button is selected, the “Node is” dropdown will list all the
available local and remote VDMs. The list box will show all of the currently selected
node’s defined input names. If the datasource is a multiple memory group detector,
you can display any of the groups by typing its name into the edit box. For example:
MULTIPLE(3:4).
When the File radio button is selected, the “Look in” dropdown will list all the avail-
able drives. The list box will show all of the files and directories in the current direc-
tory. The file name can be typed into the Name edit box or it can be selected from the
list box.
Type
When the File button is selected, the “Type” dropdown will list the file format types
you can open.
• When opened, a file with a format other than other than a CAM will
automatically be converted to a CAM file of the same name, with a .CNF file
extension and stored in the same directory as the original file.
Note: For the file conversion routine to work properly, the correct file type must
be selected before opening the file.
• If any critical parameters are not available in the selected file, appropriate
default values will be provided during conversion.
• The converted file will be stored in the same directory as the original file.
• Old files of the same name as the intended output file name will have their
extension changed to *.b?? where the question marks will be replaced with an
integer.
• The original file will be retained in its native format.
• The converted file will be opened by the application.
The supported types are:
InterWinner
CAM Oxford AccuSpec
(v 4.1 Unpacked)
Aptec PCMCA
S100 File Ortec-GammaVision Silena
v 6.31-7.02)
EasySpec Intertechnique Nucleus
Ortec-ADCAM Sampo 90 PC-ToolKit
Gamma-AT IEC 1455 Spectran-AT
2 Model S509 Alpha Analysis Option

File Menu
The Info Button

Press the Info button (Figure 1) to display information about the currently selected
CAM File datasource.
Close
Selecting Close lets you close the current datasource. If the open datasource has been
changed but not saved, you will be asked if you want to save it.
Save
Save allows you to save the datasource, with all related information, to its original lo-
cation.
Save as
Save as displays a dialog box (Figure 2) which prompts you for a file name to save the
current datasource to.
Figure 2 The Save As Dialog
The file types supported by this operation are:
CAM files (.CNF)

Toolkit files (.TKA)
IEC1455 files (.IEC)

The Description text field lets you add a file description of up to 32 characters to be
saved with the file. This information, which you’ll see in the File Descriptor field in
the Open Datasource dialog box (Figure 1), makes it easier to identify this specific
data file.
Data Plot
The Data Plot command sends a plot of the data in the spectral display to the printer
device.
Customizing Your Plot

You can choose one of four plot styles, any of three customization check boxes and ei-
ther a range of channels or the full spectrum (Figure 3). Selecting any checkbox will
preview that selection on the four sample plots.
Figure 3 The Data Plot Dialog
Plot Styles
Although any style will work well with any printer, Styles 2 and 3 are intended for
color printers and Styles 1 and 4 are intended for black and white printers.
1. Solid black spectrum line; ROIs filled with hatching.

2. Solid black spectrum line with colored ROIs.
3. Solid black spectrum line; ROIs filled with colors.
4. Solid black spectrum line.

File Menu
Grid
Check the Grid box to add X and Y grid lines to the plot. The grid is printed as
shown, with dotted lines.
Y Log Scale
Check the Y Log Scale box to change the Y-axis scale from linear to log. The maxi-
mum number of counts is determined automatically.
X Energy Scale
Check the X Energy Scale box to change the X-axis scale from channels to energy.
Range
The entire spectrum will be plotted if the Full Spectrum box is checked. If the box is
not checked, a range of channels can be plotted. If an illegal value is entered into ei-
ther of the channel boxes, the word “Error” will replace the illegal value in the box.
Save Enhanced Data Plot to File

Check the Save Enhanced Data Plot to File box to save the current spectrum as a
JPG graphics file to the Genie2K\RepFiles directory. The file will be named for the
current datasource as EDP_DatasourceName.jpg. This file is in addition to the re-
port printed to device selected in the Print dialog.
Print
When all parameters have been chosen, click Print to bring up the printer selection di-
alog.
Plot to Clipboard
The Plot to Clipboard command copies the current spectral display (including expand
window, cursors, markers) to the Windows clipboard as a bitmap. This image may
then be pasted into other applications such as word processors or paint programs. This
command can also be executed with CTRL+C.
Print Report Window

Selecting Print Report Window will print the contents of the Report Window (page
121) to the Windows default printer.
Export Report to PDF

The Export Report to PDF command creates a PDF file of the contents of the Report
Window (page 121). The standard Save As dialog lets you choose the folder to store
the file in.

Export Data Plot to PDF

The Export Data Plot to PDF command uses the JPG file generated with the “Save
Enhanced Data Plot to File” command (page 5) to create a PDF named
EDP_DatasourceName.PDF. The PDF is stored in the Genie2K\RepFiles directory.
Open Workspace
The Workspace function lets you save and restore the current Alpha Acquisition and
Analysis (AAA) settings to a “Workspace” file. This workspace file contains the spe-
cific datasources (detectors and/or spectrum files) that will be loaded, which
datasource will be the currently displayed datasource, and other display settings.
Select Open Workspace (Figure 4) to open a workspace file, which will set up the
Alpha Acquisition and Analysis (AAA) window. See “Workspace Files” on page 123
for a detailed description of a workspace file.
Or, in Windows Explorer, you can navigate to C:\Genie2k\CAMfiles and click on an

Alpha Workspace (AWS) file to automatically start the AAA application and load the
selected workspace file.
Figure 4 The Open Workspace Dialog
Save Workspace
Select Save Workspace to save the current workspace file. If the workspace file al-
ready exists, you will be asked to confirm that you want to overwrite it.

MCA Menu
Delete Workspace
Select Delete Workspace to delete the selected workspace file. You will be asked for
confirmation before the file is deleted.
Exit
Select Exit to close the Alpha Acquisition and Analysis window. You will be asked if
you want to save a changed open datasource if it has not already been saved.
MCA Menu
The MCA menu, which is available only when the currently selected datasource is a
Detector Input, contains the set of operations to be performed on the MCA and elec-
tronic front-end hardware.
Acquire Start
Select Acquire start or press the F4 key to initiate data acquisition on the current
datasource. This command is disabled for datasources that are already acquiring data.
Acquire Stop
Select Acquire stop or press the F4 key to issue an unconditional Stop command to a
currently collecting datasource.
Acquire Setup
Selecting Acquire setup displays a dialog box (Figure 5) which allows you to define
default acquisition parameters to be used when starting data collection on hardware
datasources.
Mode
The available acquisition modes depend on the MCA being used and the time and
computational preset options depend on the current acquisition mode.
• The PHA and LFC modes support time and computational presets, Input Size
and External Start/Stop.
• The MCS mode supports MCS Preset, Input Size and External Start/Stop.

Figure 5 PHA Acquire Setup
Input Size
Input Size is available only when the MCA is defined as PHA or MCS mode.
The Input Size control lets you alter the displayed size of the input of the current de-
tector input, and what is saved to a disk file. It does not change the input size in the de-
tector input definition.
External Start/Stop
External Start/Stop is available when the MCA is defined as PHA mode or as MCS
mode.
These controls are enabled when using a hardware datasource which supports using an
external trigger to start acquisition. For example, if external start is enabled and OK is
selected, acquisition will not start until the external trigger is received.
Time Preset
Time Preset is available only when the MCA is defined as PHA or LFC mode.
Live Time can be preset for the current hardware datasource in the specified number
of Seconds, Minutes or Hr (hours). Live time is mutually exclusive with real time, but
can be combined with any one computational preset.
Real Time can be preset for the current hardware datasource in the specified number
of Seconds, Minutes or Hr (hours). Real time is mutually exclusive with live time, but
can be combined with any one computational preset.

MCA Menu
Computational Presets
The Computational Presets are available only when the MCA is defined as PHA mode
or LFC mode.
These presets stop acquisition when a computed value you specify is reached. When a
computational preset is defined, the chosen time preset is still active. The acquire stop
command is issued by the preset that is reached first. If you want to use a computa-
tional preset alone, set the time preset to a very large value, such as 9000 hours. This
insures that the computational preset will be reached first.
Computational Presets are mutually exclusive with each other, but any one can be
combined with either a live time or real time preset.
None
Selecting None disables all computational presets. Only the time preset will be used.
Integral, Area and Counts

Each of the three computational presets: Integral, Area and Counts, applies to a spec-
ified ROI.
To use any computational preset, you must specify its Value, the ROI's Start Channel
and its Stop Channel. The Start and Stop Channel values will default to the current
computational preset if there is one, otherwise the Start value will be 1 and the Stop
value will be the spectrum’s highest channel number.
ROI Selection
You can enter the Start and Stop limits manually or by using the Current button in
ROI Selection or the + and – buttons to move to the next ROI. These functions auto-
matically replace the limits with the current ROI’s start and stop channels.
Clear
There are two options for clearing the spectral display:
• Select Data to remove all spectral data, including the time information in
channels one and two, from the display.
• Select Data & ROIs to remove data, time, and all ROIs from the display.
Adjust
Adjust allows you to adjust the controls of the current hardware datasource’s pro-
grammable front-end electronics. This section shows typical adjust screens, but only
those which are applicable to the current datasource will be available to you and the
controls they show will not necessarily be those shown in the illustrations.

As adjustments are made in the dialog box, the new values are sent to the hardware.
To save the adjustments to the datasource’s CAM file, use the File | Save command so
that the next time this datasource is selected, the proper setting will be loaded into the
MCA.
The Next and Previous buttons at the left side of the dialog box are used to move to
the next (or previous) “page” of the controls when there are more control elements
than will fit in the basic box.
ADC
Click on the ADC button to see the dialog box in Figure 6, which shows a typical
ADC adjust screen. The controls you see on your adjust screen may vary, depending
on which ADC you assigned to this datasource.
Figure 6 Typical ADC Adjust Dialog
Conv. Gain
Clicking either on the arrows at the ends of the Scroll Bar or in the area to either side
of the Scroll Bar’s “Slider” will change the gain by a factor of two over the control’s
range of 256 channels to the maximum number of channels supported by the MCA.
LLD Threshold
The window between the ULD setting and the sum of the LLD and LLD Threshold
settings limits the energy range considered by the ADC.
LLD
The ADC’s Lower Level Discriminator (LLD) can be set as a percentage of the ADC’s
full scale input.
ULD
The ADC’s Upper Level Discriminator (ULD) can be set as a percentage of the ADC’s
full scale input.

MCA Menu
The window between the LLD and ULD settings is used as a “filter” to limit the en-
ergy range to be considered by the ADC. Only signals within this window will be con-
verted.
Zero
The ADC’s Zero is factory set for each conversion gain, so that a Zero setting of 0%
corresponds to zero intercept (zero energy input stores in channel 3, the first channel
used for spectral data storage) for that conversion gain. The Zero control can be used
to change the zero intercept to another channel.
Offset
The ADC’s Digital Offset shifts the memory assignment of the ADC’s conversions.
With no (zero) offset, the ADC’s channel numbers are the same as the memory assign-
ment’s channel numbers. For example, if the Gain is programmed to 8192 and the
memory assignment is only 4096, an Offset of zero will allow only the lower half of
the full-scale conversions to be stored. But if the Offset were set to 4096, channel
4096 of the ADC would be shifted down to correspond to channel zero of the memory.
This offset would allow the upper half of the full-scale conversions to be stored in the
assigned MCA memory.
Stabilizer
Click on the Stab. button to see the Stabilizer Gain dialog box in Figure 7, which
shows a typical stabilizer adjust screen. The controls you see on your adjust screen
may vary, depending on which stabilizer you assigned to this datasource.
Figure 7 Typical Stabilizer Adjust Dialog
Figure 8 shows the relationship between several of the Stabilizer’s functions.
After setting the Stabilizer’s controls, perform a File | Save so that the next time this
datasource is selected, the proper setting will be loaded into the MCA.

Figure 8 Relationship Between Stabilizer Functions
Gain Centroid
This control sets the reference channel at the high end of the spectrum for gain stabili-
zation, since gain drift is more pronounced in the upper channels. The centroid’s chan-
nel number can also be typed in from the keyboard, then accepted with the Ok button
within the control. To allow the stabilizer to correct for gain drift, the count rate in the
gain reference peak must be significantly higher than the count rate in the background.
Zero Centroid
This control sets the reference channel at the low end of the spectrum for zero inter-
cept stabilization, which prevents interference from the effects of gain drift. The cen-
troid’s channel number can also be typed in from the keyboard, then accepted with the
Ok button within the control. To allow the stabilizer to correct for zero drift, the count
rate in the zero reference peak must be significantly higher than the count rate in the
background.
Gain and Zero Window Controls

These controls set the width (in channels) of the upper and lower sampling windows
for each Mode. The operation of the stabilizer depends on measuring the count rate in
these two windows, detecting a difference, then providing a correction to equalize
count rates.

MCA Menu
Gain and Zero Spacing Controls

These two controls set the spacing (in channels) between the upper and lower sam-
pling windows for each Mode. The windows should be placed so that a shift in the ref-
erence peak reflects a significant change in count rate through the windows. For broad
peaks, the spacing should be set so that the windows edges are not on the flat part of
the peak.
Gain and Zero Mode Controls

The Stabilizer’s Gain and Zero, or both, can be set to Off, On or Hold.
If the drift in either mode (zero or gain) exceeds the Correction Range, the overrange
flag will be set and that mode will be changed to hold. Set that mode to off to clear the
overrange flag, then correct the cause of the excessive drift before returning the mode
to on.
On enables stabilization for the specified mode, allowing the Stabilizer to compare
the incoming data to the Mode’s Centroid and Window settings, then compensate
for data below (or above) the Centroid.
Off disables stabilization for the specified mode and sets the correction adjustment
to zero and clears the overrange flag if it was set.
Hold disables stabilization for the specified mode, but maintains the current
correction adjustment at the Stabilizer’s output.
Amplifier
Click on the Amp button to see the dialog box in Figure 9, which shows a typical ad-
just screen for a programmable amplifier. The controls you see on your adjust screen
may vary, depending on which amplifier you assigned to this datasource. Click on the
Next button to see the PUR and Pole/Zero controls.
Figure 9 Typical Amplifier Adjust Dialog

Coarse Gain
The Amplifier’s Coarse gain setting is selected from the drop down list. For most con-
figurations, it’s best to choose the highest Coarse Gain which, combined with the Fine
and S-Fine Gains, will produce the total desired gain.
Fine Gain and S-fine Gain

The Fine Gain and Super Fine Gain controls are set with their Scroll Bars.
Shaping Mode
This control sets the amplifier’s shaping time constant for use with different detectors.
PUR
This control, turns the amplifier’s Pileup Rejector (PUR) On or Off. When PUR is on,
a Live Time correction is performed for pulses that are piled up. A procedure for ad-
justing the Pileup Rejector for optimum performance is described in the “Adjusting the
PUR/LTC” section of Appendix C, Technical Information, in the Genie 2000 Opera-
tions Manual.
BLR Mode
The BLR (baseline restorer) control’s the Asymmetrical mode which normally offers
superior high count rate performance for high resolution Ge spectroscopy. The Sym-
metrical mode is used on Ge systems with high noise levels, scintillation and propor-
tional detectors, and Si systems.
The Symmetrical mode should always be used for detector systems which exhibit
baseline discontinuities resulting from excessive noise and/or high voltage effects,
preamp reset pulses and preamp secondary time constants. Secondary preamp fall time
constants result in unipolar output undershoots making it difficult to optimize the am-
plifier preamp matching.
Pole/Zero
The amplifier’s pole/zero, which must be changed whenever the Amplifier’s Shaping
is changed or a different detector is used, can be adjusted automatically or manually.
Auto P/Z: Click on Start to start the amplifier’s automatic pole/zero optimization
process, which is required before acquiring spectra with RC-type preamps.
For auto pole/zero to function properly, the incoming counts should be between 25%
and 100% of full scale. For a 0-2 MeV setup, this generally means that at 500 keV or
higher, the incoming count rate in this window should be greater than 100 cps. The
maximum count rate over the full ADC range should be < 2 kcps. If the pole/zero fails
to converge, check for the proper count rate.
The pole/zero adjustment will be more accurate if the spectrum contains a

significant count rate above 70% of full scale.

MCA Menu
After adjusting the pole/zero, you can see the current pole/zero setting by selecting
a different Adjust screen, such as ADC, then reselecting Amp. This will update the
number above the slider control. If, after performing an Auto P/Z and refreshing the
screen, the setting has changed significantly, try to do another Auto P/Z cycle; the
P/Z circuits may need more time to find the optimum setting.
Manual P/Z: In some situations the auto pole/zero may fail to converge to an
optimal value, so a slider control is provided which allows you to manually adjust
the pole/zero setting. The adjustment procedure is described in detail in the
“Manual Pole/Zero” section of Appendix D, Technical Information, in the Genie
2000 Operations Manual.
TRP Preamps
When a Transistor Reset Preamp (TRP) is used, the pole/zero is fixed (at 0), but you
may have to make an adjustment on the TRP preamp so that the amplifier and ADC
are gated off during the preamp’s reset time. This procedure is described in the “Ad-
justing the TRP Reset Pulse” section of Appendix D, Technical Information, in the
Genie 2000 Operations Manual.
High Voltage
Click on the HVPS button to see the dialog box in Figure 10, which shows a typical
HVPS adjust screen. The controls you see on your adjust screen may vary, depending
on which HVPS you assigned to this datasource.
Figure 10 Typical High Voltage Adjust Dialog
Voltage
The Voltage scroll bar sets the output of the HVPS between the minimum and maxi-
mum settings of the Voltage Limit control set in the MID Editor. The voltage can also
be typed in from the keyboard, then accepted with the Ok button within the control.

Status
If the Power Manager, described in the next section, is in the Battery Full mode or the
AC Full mode, you can turn the HVPS On or Off. In the Battery Save mode, you can
set the HVPS to Armed or Off. If Armed is selected, the HVPS will be automatically
turned on when acquisition starts.
HVPS Reset
The HVPS is turned Off when a fault caused by an overload or an Inhibit occurs with
an Inspector HVPS. After the fault condition has been cleared, click on HVPS Reset
to reset the HVPS, then turn it On again with the Status control.
Clear Ov/In Latches

When a fault caused by an overload or an inhibit occurs with an ICB HVPS, its Over-
load and Inhibit latches are set. After the fault condition has been cleared, click on
Clear Ov/In Latches to reset the latches.
Power Manager
Click on the PwrMgr button to see the dialog box in Figure 11, which shows a typical
power manager adjust screen. The controls you see on your adjust screen may vary,
depending on which power manager you assigned to this datasource.
Figure 11 Typical Power Manager Adjust Dialog
Power Mode
Click on a Power mode button to select one of the device’s power modes.
The Battery Full mode keeps the system electronics on at all times using power
from the device’s batteries.
The Battery Save mode minimizes battery drain by turning off some of the
device’s circuits whenever possible. When data acquisition is initiated, the system
changes to the Battery Full mode and data acquisition begins after the Acquisition
Delay time has elapsed, which allows time for the high voltage to reach its preset

MCA Menu
value and for the internal electronics to become thermally stable. When acquisition
is finished, the system returns to the Battery Save mode.
In the AC Full mode, the device operates from battery port A. If the AC Power
Adapter is connected to this port, it will supply power to the device. The AC
Adapter’s User’s Manual tells you how to connect it to the battery port with the
supplied connecting cable. If ac power is lost, the Power Manager will
automatically switch to port B, allowing its battery to continue supplying power.
When ac power is restored, the Power Manager will switch back to port A.
Acq. Delay
The Acq. Delay control (enabled only in the Battery Save mode) sets a delay time
which holds off actual data acquisition until the high voltage has reached its preset
value and the internal electronics are thermally stable. A minimum delay of one min-
ute is provided to allow the high voltage to increase to its preset value and the internal
electronics to warm up. The internal electronics will stabilize to within 0.1% of their
final settings in less than five minutes.
Standby Delay
The Standby delay control (enabled only in the Battery Save mode) sets the amount
of time that the system can remain idle (neither acquiring data nor communicating
with the host computer) before it automatically changes to Standby. In Standby, all
electronics except the Power Manager are shut down until the next command is re-
ceived from the host. A setting of 0 minutes will prevent the device from switching to
Standby.
Status
Selecting Status shows a Status Report of all devices (MCA and programmable
front-end electronics) associated with the current hardware datasource. Figure 12
shows a typical Status Report, which includes device type, serial number, and any pro-
grammable settings that are obtainable from each device. An asterisk next to the pa-
rameter means that the setting read from the device was different than expected.
Though the majority of the entries in the Status Report are direct reflections of the
MCA Input Definition Editor settings or the spectral display Adjust settings, a few of
them are explained in greater detail in the “Status Screen Entries” section of the Tech-
nical Information appendix in the Genie 2000 Operations Manual.

The Update button sends all programmable parameters to the devices and verifies
them, updates the Status Screen, and, if the Status field had been changed to red be-
cause an error was detected on the datasource, changes the field to white if the re-
ported error has been corrected (remember that a datasource includes an MCA and
various front-end devices). You’ll find more information on possible errors in “Genie
2000 Input Datasource Errors” in the Genie Error Codes chapter of the Genie 2000
Customization Tools Manual.
Figure 12 Typical Status Report
Advance
Selecting Advance issues an advance command to a sample changer assigned to the
current hardware datasource. If this datasource does not have a sample changer as-
signed to it in the MID configuration file, the command will not be issued.
Load
If you are displaying a Detector (hardware) datasource and you have at least one CAM
File datasource open, you can copy spectral data (and, optionally, energy calibration
information) from the selected CAM File datasource to the Detector datasource.
Selecting Load displays the dialog box in Figure 13. Use the “Load from:” list box to
choose one of the open CAM File datasources. If you want to copy the energy calibra-
tion information as well, select the “Include Energy Calibration” check box.

Calibrate Menu
Figure 13 Load From a Datasource
Calibrate Menu
The Calibrate menu provides several options for calibrating the energy and efficiency
of the datasource, graphically displaying the calibration, setting preferences for the
calibration, and loading and storing calibration files.
Setup
The Calibration Setup dialog (Figure 14) allows you to select preferences and calibra-
tion settings to be used throughout the calibration and analysis processes.
Figure 14 Calibration Setup

Preferences
Energy Units: Though energies are stored in keV, you can change how energy units
are shown in the display’s dialog boxes and in reports: eV, keV, MeV or Other.
The proper Conversion Factor for “other” units is defined as the number of keV units
equal to 1 “other unit”. For example, the conversion factor for MeV would be 1000 be-
cause there are 1000 keV units in 1 MeV.
Tolerance Units: For the units to be used for entering tolerances, chose either Energy
(a constant energy value across the spectrum) or FWHM (the energy varies according
to the FWHM calibration).
Calibration Settings
Tolerance: Energy Calibration and Peak Match values can be set in terms of energy
(in the selected energy units) or FWHM.
Energy Calibration Tolerance is used during energy calibration in matching

spectrum peaks to the current populated list, plus or minus the tolerance value.
Efficiency and Match Tolerance is used during efficiency calibration to match

calculated peaks with the peaks in the specified certificate file, plus or minus the
tolerance value. It is also used to match energies and peaks during later analysis.
Tail curves: Low is normally chosen for calibrating Alpha spectra because they ex-
hibit tailing on the low energy side of the peaks. Choose None to turn off this calibra-
tion function.
Continuum: None is normally chosen when calibrating Alpha spectra, but you can
choose to establish the continuum under the peaks by selecting either a Linear function
or a Step function. The Linear function is adequate when the continuum is relatively
flat. It is a simple, straightforward equation that estimates the continuum under the
peaks as a trapezoid. The Step function would be chosen if there are any regions in the
spectrum where the continuum is significantly higher on the left side of a peak region
than on the right side. This function automatically reduces to a flat line when the con-
tinuum is flat.
The Channels parameter is not available when Continuum is set to None, the
normal choice for Alpha spectroscopy. When used, it establishes the continuum
under the peak ROIs. If you have two peaks that are close together, reducing the
number of continuum channels may give better results. If you have poor peak
statistics and there are no other peaks nearby, increasing the number of continuum
channels establishes the continuum more accurately but makes it more likely that
close lying peaks will be considered as a multiplet instead of as a singlet.
FWHM or Channels. Choose FWHM to let the continuum vary according to the
shape calibration. Choose Channels to keep the continuum fixed across the

Calibrate Menu
spectrum. The specified number of FWHMs or the specified number of continuum

channels will be used on both sides of the peak to establish the continuum under the
peak ROIs.
If you plan to use either the Cursor or the Marker method and the calibration peaks
are very close to other peaks, you should set the continuum mode to Channels and
set the value in the Channels text box to a small number. The Cursor and Marker
methods do not use the expected FWHM information, even when it is available. If
you plan to use the Auto button, you may set the continuum mode to FWHM. If
you plan to use a mixture of both modes, both parameters should be set
appropriately.
Analysis Sequence Description

The Analysis Sequence Description dropdown is a list of the currently defined se-
quences on your system. Selecting one of the sequences will direct efficiency calibra-
tion to execute the peak locate and peak area engines of the selected sequence when
the Auto button is pressed. The default selection is NONE.
Energy Only Calibration

The standard energy calibration includes low-tail and FWHM values. For a simpler
energy calibration, this function (Figure 15) allows you to enter the calibration using
only energy/channel pairs, either by the Cursor method or the Manual Method. If only
one energy/channel pair is entered, a second pair will automatically be generated as
<energy/channel, 1> when you exit the dialog with an OK.
Figure 15 Energy Only Calibration

Manual Method
To add an entry to the list box, type an energy value into the Energy text box and the
corresponding channel number in the Channel text box, then select Accept. You can
add these energy/channel pairs in any order; they will always be displayed in ascend-
ing energy order.
Cursor Method
To use this method, there must be a spectrum in the Spectral Display area and its cur-
sor must be on the peak that is being used for calibration.
Select the Cursor button to add the window’s cursor channel position to the Channel
text box. Now enter an energy value in the Energy text box and press Accept to add
the data to the list box.
Show
This function is available only when at least two energy/channel pairs have been en-
tered, either by you or by the system. When you select the Show button, the energy
calibration curve will be displayed as a graph. Please refer to “Energy Show” on page
32 for a complete discussion and an illustration of this function.
Delete
To remove a line and its values from the list box, highlight the line, then select the De-
lete button.
Energy Coefficients
Selecting Energy Coefficients displays a dialog box (Figure 16).
If you edit an existing calibration curve, any points previously used to generate that
curve will be deleted and will not be available for further Populate operations on the
current datasource.
Figure 16 The Energy Coefficients Dialog

Calibrate Menu
Show Button
Select the Show button to display the energy calibration curve as a graph. Please refer
to “Energy Show” on page 32 for a complete discussion of this function.
Energy Full
When you select Energy Full, its cascade menu lets you choose how energies are to
be entered for spectrum calibration:
• By Certificate File lets you to select a certificate file containing the energies.
• By Nuclide List lets you to select a list of nuclides and their energies from a
specified library.
• By Calibration File lets you to select a calibration file defining the list of
energies.
• By Entry lets you manually enter each energy, its channel number, and its
FWHM and Low Tail values.
By Certificate File
Calibrating By Certificate File lets you choose either of two types of a certificate file
(Figure 17) as a source of calibration energies: full or partial. The partial certificate file
(.CTP) is similar to the full certificate file (.CTF), lacking only the assay date and
time and the activity units for each nuclide. To add this data, see “Additional Nuclide
Information” in the “By Nuclide List” section on page 25.
Figure 17 Calibrate by Certificate File

When you have highlighted the certificate file name you want to use, you can either
select Info to see more information on the file, or select OK to load the file into the
energy line editor.
Append to Existing Calibration

When adding energy points to the current datasource from a file, such as in construct-
ing a composite efficiency file, there may be common energy points in the two files. If
the Append to Existing Calibration checkbox is selected, the system will ask if you
want to append to the existing calibration. If you answer “yes”, it will tell you each
time it finds a duplicate entry.
Editing the List

When you open the file, you’ll see the “Energy Calibration – Full” screen, which al-
lows you to examine and, if necessary, edit the data in any of the lines. Please refer to
“Energy Calibration – Full” on page 29 for an illustration and explanation of this
screen.
By Nuclide List
Calibrating By Nuclide List lets you choose a nuclide list (Figure 18) as a source of
nuclide lines. You can either accept the displayed nuclide Library (NLB) file or use
the Select button to choose another one.
Figure 18 Calibrate by Nuclide List

Calibrate Menu
Save as Certificate
If you highlight one or more nuclides, then choose Save as Certificate you’ll create a
“partial” certificate file (.CTP) which can be used for energy calibration.
This certificate file is similar to the “full” certificate file (.CTF) created in the Certifi-
cate File Editor, lacking only the assay date and time and the activity units for each
nuclide.

You can select OK to save this limited data as a “partial” certificate file. If you want
to add the missing information, making this a full certificate file, highlight one or more
nuclides, then choose Additional Info to enter the additional data.
Additional Nuclide Information

In addition to entering the nuclide’s assay date and time and its activity units, this
screen (Figure 19) lets you enter the percent uncertainty and change the activity units.
Figure 19 Editing Additional Nuclide Data

General Information: These text boxes let you enter or change assay date and time
and the activity units.
The Assay Date is the date and time when the source was measured (you must enter
both).
Though Activity Units defaults to μCi, you can choose another unit for reporting
nuclide activities. The Conversion Factor defaults to the proper value for converting
Bq to μCi. If you choose the last item in the Activity Unit list, < >, you can type in the
name of any other unit, then enter the Conversion Factor that will convert your units
to μCi.
Nuclides: Highlight a nuclide in the list box to enter or edit its Activity and Percent
Uncertainty data. When you’ve finished editing that nuclide, select Change. This will
copy the data to the list file and move the highlight to the next nuclide.
When you’ve finished, select OK to save this as a “full” (.CTF) certificate file and re-
turn to the Calibrate by Nuclide List screen. You’ll see that all nuclides which have
Additional Nuclide Information added are marked by a double asterisk (**).
If you are satisfied that all data in the Calibrate by Nuclide List screen is correct, you
can select this screen’s OK to load the file into the energy line editor.
Editing the List

When you select OK, you’ll see the “Energy Calibration – Full” screen, which allows
you to examine and, if necessary, edit the data in any of the lines. Please refer to “En-
ergy Calibration – Full” on page 29 for an illustration and explanation of this screen.

Calibrate Menu
By Calibration File
Choosing to calibrate By Calibration File displays a dialog box (Figure 20) which
lets you select a Calibration File defining the list of energies to be used for calibration.
Figure 20 Calibrate by Calibration File

Editing the List

When you open the file, you’ll see the “Energy Calibration – Full” screen, which al-
lows you to examine and, if necessary, edit the data in any of the lines. Please refer to
“Energy Calibration – Full” on page 29 for an illustration and explanation of this
screen.
Info
The Info button displays descriptive information for the selected file.

By Entry
Choosing to calibrate By Entry displays a dialog box (Figure 21) which lets you man-
ually enter energy/channel pairs to be used in generating the energy calibration coeffi-
cients for the energy vs. channel equation.
Figure 21 Calibrate by Entry
You must also manually enter FWHM values to be used in generating the shape cali-
bration coefficients for the FWHM vs. energy equations.
If Low Tail Curve was selected in the Calibration Setup dialog (page 19), you are also
allowed to manually enter Low Tail values to be used in generating the shape calibra-
tion coefficients for the Low Tail vs. Energy equations.
Add Button
To create any entry in the list box, type an energy value into the Energy text box, then
the corresponding channel number, FWHM value (in channels), and Tail value (in
channels) in their text boxes. When the values have been entered, select Add. You can
add these energy/channel pairs in any order; they will always be displayed in ascend-
ing energy order.
Delete Button
To remove a line and all its values from the list box, highlight the line, then select the
Delete button.
Change Button
To change any of the values for a line, highlight the line, edit any of the values, then
select the Change button to move the changes to the list box.

Calibrate Menu
Clear Button
Instead of editing the values one by one, you can remove all values from the text
boxes for the highlighted line by selecting the Clear button. This will clear all entries
at the once.

Editing the List

When you select OK, you’ll see the “Energy Calibration – Full” screen, which allows
you to examine and, if necessary, edit the data in any of the lines. Please refer to “En-
ergy Calibration – Full” on page 29 for an illustration and explanation of this screen.
Energy Calibration – Full

The Energy Calibration – Full dialog (Figure 22) allows you to mark calibration
peaks in a reference spectrum, then calculate the energy vs. channel, FWHM vs. en-
ergy, and tail vs. energy curves. You can enter Calibration peaks into the list box by
the Cursor Method or the Marker Method, described in the following subsections.
Figure 22 The Energy Calibration - Full Dialog
Peak Edits
In the Peak Edits box, you’ll see the Cursor button, which is used with the Cursor
Method, the Markers button, which is used with the Marker Method, and for both
methods, the Accept button, used to add the entry in the Energy text box to the list
box, and the Delete button, used to delete the highlighted entry from the list box.

You’ll also see the Ref Pk button, which selects/deselects the currently highlighted
entry in the list box as the reference peak. Only one peak, from a pulser for instance,
may be assigned as a reference peak. The reference peak will not be used during the
calculation of the calibration coefficients.
Cursor Method
To use the Cursor Method, there must be a spectrum in the Spectral Display area and
its cursor must be on the peak that is being used for calibration.
Select the Cursor button to use the window’s cursor channel position to determine an
approximate FWHM in order to establish a computed (as opposed to displayed) ROI and
attempt to fit the peak. The computed peak centroid, computed FWHM, and tail values
will be calculated and displayed in the list box. Now enter an energy value in the Energy
text box and choose Accept to add the data to the highlighted list box entry.
Note that because the Cursor Method uses a relatively unsophisticated routine to deter-
mine ROI limits, it is not the best choice in certain calibrations, such as for NaI spec-
tra. The Marker Method is recommended for NaI spectra.
Marker Method
To use the Marker Method, there must be a spectrum in the Spectral Display area and
its markers must be around the peak that is being used for calibration.
Select the Markers button to use the window’s markers to establish an ROI and at-
tempt to fit the peak. The computed peak centroid, computed FWHM, and tail values
will be calculated and displayed in the list box. Now enter an energy value in the En-
ergy text box and choose Accept to add the data to the highlighted list box entry.
The Marker Method is recommended for spectra where there are other peaks close to
the calibration peak or when calibrating NaI spectra.
Auto Button
The Auto button performs an automatic peak locate on the reference spectrum. The
list box is then populated with those energies found in both the populate file and the
reference spectrum with their associated channel values.
Use-Results Buttons
The Use-results button will retrieve energy/channel/FWHM/tail results directly from
the current data source and populate the list box. This button will be disabled if peak
area analysis results are not present.

Calibrate Menu
Energy Recalibration
Selecting Energy recal displays a dialog box (Figure 23) which lets you recompute
the energy vs. channel calibration curve. Shape calibrations (FWHM and Low Tail)
are not affected by this command; note that the FWHM/energy and Low Tail/energy
pairs used by the shape calibration curves are zeroed out.
Figure 23 The Energy Recal Dialog
Populate
The Populate button invokes a dialog screen, similar to the one in Figure 24, which
allows you to populate the list box with the energies from the current datasource, a
certificate file, or a previously stored calibration file.
Figure 24 The Populate Screen

If the certificate or calibration population option is invoked when the list box already
contains energies, there may be a duplication of energy entries. If a duplicate is found,
you will be asked if you want to replace the existing energy entry.
Auto
The Auto button performs an automatic peak locate on the reference spectrum. The
list box is then populated with those energies found in both the populate file and the
reference spectrum with their associated channel values.
Show Button
Select the Show button to display the energy calibration curve as a graph. Please refer
to “Energy Show” on page 32 for a complete discussion and an illustration of this
function.
Energy Show
Selecting the Energy Show menu item (or the Show button on some screens) will dis-
play the calculated energy calibration curve as a graph, as seen in Figure 25. You can
select the Energy button to show the energy curve or you can select the Shape button
to show the FWHM and Low Tail curves.
Figure 25 A Typical Energy Show Display
The Show Energy Calibration Curves display contains a Peak text box so that you can
eliminate outlying peaks one at a time. Enter the number of the peak to be dropped,
then select Drop Pk. The peak will be deleted from the list and both the curve and the
equation will be regenerated. You may repeat Drop Peak until satisfactory results are
obtained but you can’t reduce the number of data points to less than two.

Calibrate Menu
Note that the “Order of the polynomial” is limited by the number of data points pres-
ent. For instance, at least two points are required for a first order curve and at least
four points are required for a third order curve.
The “Order of the polynomial” field is enabled for the energy curve only. Click on the
`+’ (`–’) button to increase (decrease) the order value.
Select the Print button to send an output of the currently displayed curve(s) to the de-
fault print queue.
Efficiency
When you select Efficiency, its cascade menu lets you choose how energies are to be
entered for spectrum calibration:
• By Certificate File, which allows you to select a certificate file containing the
energies.
• By Nuclide List, which allows you to select a list of nuclides and their energies
from a specified library.
• By Calibration File, which allows you to select a calibration file defining the
list of energies.
• By Entry, which lets you manually enter each energy and its Efficiency and
%Error values.
By Certificate File
Calibrating By Certificate File lets you choose a certificate file (Figure 26) as a
source of calibration energies and their efficiencies. When you have highlighted the
certificate file name you want to use, you can either select Info to see more informa-
tion on the file, or OK to load the file into the energy line editor.

Figure 26 Calibrate by Certificate File

ing a composite energy file, there may be common energy points in the two files. If the
Append to Existing Calibration checkbox is selected, the system will ask if you want
to append to the existing calibration. If you answer “yes”, it will tell you each time it
finds a duplicate entry.
Editing the List

When you open the file, you’ll see the Efficiency Calibration screen, which allows you
to examine and, if necessary, edit the data in any of the lines. Please refer to “Perform-
ing the Efficiency Calibration” on page 39 for an illustration and explanation of this
screen.
By Nuclide List
Calibrating By Nuclide List lets you choose a nuclide list (Figure 27) as a source of
nuclide lines. You can accept all nuclides in the list by choosing OK to move to the
Efficiency Calibration screen, which allows you to examine and, if necessary, edit the
data in any of the lines. Please refer to “Performing the Efficiency Calibration” on
page 39 for an illustration and explanation of this screen.

Calibrate Menu
Figure 27 Calibrate by Nuclide List
Save as Certificate
If you highlight one or more nuclides, then choose Save as Certificate, you’ll create a
“partial” certificate file (.CTP), which is similar to the “full” certificate file (.CTF)
created in the Certificate File Editor, lacking only the assay date and time and the ac-
tivity units for each nuclide.
To save this as a “full” certificate file (to use for efficiency calibration), you’ll have to
add the missing information. Highlight one or more nuclides, then choose Additional
Info to bring up the screen shown in Figure 28.


Figure 28 Editing Additional Nuclide Data
Additional Nuclide Information

In addition to entering the nuclide’s assay date and time and its activity units, this
screen lets you enter the percent uncertainty and change the activity units.
General Information: These text boxes let you enter or change assay date and time
and the activity units.
The Assay Date is the date and time at which the source was measured (you
must enter both).
Though Activity Units defaults to μCi, you can choose another unit for reporting
nuclide activities. Since the activities are stored in microcuries, the Conversion
Factor defaults to the proper value for converting microcuries to other units. If
you choose < >, you can type in the name of an Activity Unit not shown in the
list, then enter the Conversion Factor that will convert your units to μCi.
Nuclides: Highlight a nuclide in the list box to enter or edit its Activity and Percent
Uncertainty data. When you’ve finished editing that nuclide, select Change. This will
copy the data to the list file and move the highlight to the next nuclide.
When you’ve finished, select OK to save this as a “full” (.CTF) certificate file and re-
turn to the Calibrate by Nuclide List screen. You’ll see that all nuclides which have
Additional Nuclide Information added are marked by a double asterisk (**).
If you are satisfied that all data in the Calibrate by Nuclide List screen is correct, you
can select this screen’s OK to load the file into the energy line editor.

Calibrate Menu
Editing the List

When you select OK, you’ll see the Efficiency Calibration screen, which allows you
to examine and, if necessary, edit the data in any of the lines. Please refer to
“Performing the Efficiency Calibration” on page 39 for an illustration and explanation
of this screen.
By Calibration File
Choosing to calibrate By Calibration File displays a dialog box (Figure 29) which lets
you select a Calibration File defining the list of energy/efficiency/error triplets to be used
for calibration. The Info button displays descriptive information for the selected file.
Figure 29 Calibrate by Calibration File

Editing the List

When the values for all nuclides have been entered, select OK to move to the Effi-
ciency Calibration screen. This screen allows you to examine and, if necessary, edit
any of the lines. Please refer to “Performing the Efficiency Calibration” on page 39 for
an illustration and explanation of this screen.

By Entry
Choosing to calibrate By Entry displays a dialog box (Figure 30) which lets you man-
ually enter energy, efficiency and percent error values to be used in generating the ef-
ficiency calibration. Note that you can use up to 45 calibration data sets for
calibration; any more than that will be ignored.
Figure 30 Calibrate by Entry
Add Button
To create any entry in the list box, type an energy value in the Energy text box, then
the corresponding Efficiency and Percent Error values in their text boxes. When the
values have been entered, select Add. You can add these energy/channel pairs in any
order; they will always be displayed in ascending energy order.
Delete Button
To remove a line and all its values from the list box, highlight the line, then select the
Delete button.
Change Button
To change any of the values for a line, highlight the line, edit any of the values, then
select the Change button to move the changes to the list box.
Clear Button
Instead of editing the values one by one, you can remove all values from the text
boxes for the highlighted line by selecting the Clear button. This will clear all entries
at the once.

Calibrate Menu

Editing the List

When the values for all nuclides have been entered, select OK to move to the Effi-
ciency Calibration screen. This screen allows you to examine and, if necessary, edit
any of the lines. Please refer to “Performing the Efficiency Calibration” on page 39 for
an illustration and explanation of this screen.
Performing the Efficiency Calibration

Efficiency Calibration (Figure 31) allows you to enter Energy values, Efficiency val-
ues, and appropriate Error (%) estimates in order to calculate the average efficiency.
You can use up to 45 calibration data sets for calibration; any more than that will be
ignored.
Figure 31 Efficiency Calibration
Since Efficiency Calibration always executes the Peak Locate and Peak Area algo-
rithms, you should first choose the algorithms you want to use from the Analyze Menu
(pages 76 and 80). If you don’t specify your own choices, Efficiency Calibration will
use the first Peak Locate and Peak Area algorithms it finds in the spectroscopy appli-
cation’s .AEF file (which may not always be the ones you want to use). Note that the
chosen peak algorithms are applied to all open datasources.
Accept Button
The Accept button verifies the entered values and displays them in the list box.

The Delete Button

The Delete button is used to delete the highlighted entry from the list box.
Auto Button
If population has been done from a certificate file, the Auto button will perform a peak
locate with area analysis for each peak in the current datasource. The list box is then
populated with the peak areas in the datasource that match those in the certificate file.
Note that the peak locate and peak area analysis algorithms are determined by the
analysis sequence selected from the Calibration Setup dialog (page 19). If “NONE”
was selected, then the algorithms default to the ones last chosen from the Analyze
Menu.
CAUTION Analysis sequence (.ASF) files contain their own algorithm

definitions. It is up to the user to make sure that the algo-
rithms called in these sequences are the same as the algo-
rithms used for efficiency calibration. Failure to do so may
greatly affect the accuracy of the results.
Use-Results Button
The Use-results button will retrieve peak analysis results directly from the current
datasource and populate the list box. This button will be disabled if peak area analysis
results are not present.
Show Button
Select the Show button to display the efficiency calibration curve as a graph. Please
refer to “Efficiency Show” on page 40 for a complete discussion and an illustration of
this function.
Efficiency Show
Selecting the Efficiency Show menu item (or the Show button on some screens) will
display the efficiency calibration as a graph (Figure 32).

Calibrate Menu
Figure 32 Show Efficiency Calibration
Scale
You can choose the scale of the graph (Linear or Log/Log) in the Scale box.
Peak
The Peak text box lets you eliminate outlying peaks one at a time. Enter the number of
the peak to be dropped, then select Drop Pk. The peak will be deleted from the list
and both the curve and the equation will be regenerated. You may repeat Drop Peak
until satisfactory results are obtained but you can’t reduce the number of data points to
less than three.
List Peaks
Select the List Pks button to display a list of the peaks used in the calibration, as
shown in Figure 33. The measured vs. calculated efficiencies are listed to show how
accurately the curve follows the measured points.
Figure 33 The List Peaks Dialog

You can leave the list on screen while working in the Show Efficiency Calibration
Curve dialog box so that you can easily change the graph’s scale or drop peaks. If you
highlight a peak in the List Peaks box, its peak number will automatically be placed in
the Peak text box so that you can easily drop it.
Print
Select the Print button to send an output of the currently displayed curve(s) to the de-
fault print queue.
Gain Evaluator
The Gain Evaluator (Figure 34), which can be used with both file datasources and de-
tector datasources, does not perform any hardware adjustments. Instead, it allows you
to analyze the quality of the current datasource energy calibration and gain settings, to
assess the impact on NID analysis, and to make corrective data adjustments, including
file gain adjustments and saving the calculated energy calibration.
Figure 34 Gain Evaluator Dialog

Calibrate Menu
The specified datasource must already contain a spectrum acquired from a source with
known true energies. When the Evaluator window opens, the evaluation results are
populated using the datasource NID analysis results for true energies and the current
peak search results for found energies.
The Gain Evaluator and Auto Gain Adjust functions primarily correct and assess gain
shift (errors in the slope term of the initial energy calibration). Though some error in
the initial equation's other calibration terms (zero/intercept and quadratic/higher order)
can be accommodated, you should ensure that these other terms are reasonably accu-
rate to obtain the most stable, reliable results.
Zooming in on the Data

To magnify an area of interest in the data plot, click and drag to draw a rectangle
around the area. When you release the mouse button, the plot will redraw itself to
magnify the data (zoom in on) the area of interest. You can continue to zoom in by
drawing the rectangle around smaller areas of the expanded data.
Undo Zoom
To return to a full screen data plot, right click on the plot, then select the Undo Zoom
command.
Context Menu
Right-clicking on the data plot brings up a Context Menu of items for rendering the
data (Figure 35).
Figure 35 Context Menu
Undo Zoom
The Undo Zoom command will undo all levels of zoom at once and return to the nor-
mal data plot.

Maximize
The Maximize command expands the data plot to full screen. Press your keyboard’s
ESC key to close the maximized display window.
Print Graph
The Print Graph command prints the data plot to the system’s current print device.
Copy to Clipboard
The Copy to Clipboard command copies the data plot to the clipboard as a graphic,
suitable for pasting into presentation software or a word processor.
Interactive vs. ASF Evaluation

The Gain Evaluator can be run interactively or as a part of an analysis sequence. In the
interactive mode, you can select any or all of the energies in the True Energies list
box. When used as a step in an Analysis Sequence File, energies can’t be selected; the
routine will use all of the energies in the specified Source of True Energies.
Source of True Energies

Select the source of energies to be used in performing the Gain Evaluation.
• The Current NID Analysis Results
• A Certificate File
• A Nuclide Library File
Ideally, the source of true energies should list energies that correspond to all of the
found peaks and no more. However, to get reliable results and avoid excessive
computational time, the number of input true energies should be no greater than twice
the number of found energies (and contain energies that actually correspond to most of
the found peaks).
The routine can’t resolve more than one nuclide at the same energy in the source of
true energies, so matches will not be made at any true energy that is repeated. Best re-
sults will be obtained if all of the input true energies have a relative separation of at
least several FWHM. It is also desirable to have peaks that span the full range of the
spectrum.
Current NID Analysis Results

Select the Current NID Analysis Results button to specify the Nuclide ID analysis of
the current spectrum as the source of true energies.
Using the current NID analysis results as the source of true energies will be successful
only if any gain shift was small enough to be accommodated by the NID energy toler-
ance during analysis.

Calibrate Menu
Unexpected or low quality NID analysis results may indicate an excessive gain shift
that would be better evaluated using a different source of true energies. In this case,
selecting only expected nuclide energies from a nuclide library or certificate file is rec-
ommended (perhaps requiring some trial and error experimentation).
Certificate File
Select the Certificate File button to specify a certificate (CTF) file as the source of
true energies.
A certificate file is typically used when the NID analysis results are unavailable or are
suspect, and there is some a priori knowledge about the measured source that is al-
ready documented in the certificate file.
Nuclide Library
Select the Nuclide Library button to specify a nuclide (NLB) library as the source of
true energies.
A nuclide library is typically used when the NID analysis results are unavailable or are
suspect, and there may or may not be some a priori knowledge about the measured
source.
Iteratively selecting likely nuclides and assessing the results until good matches are
achieved can sometimes be a successful strategy for empirically determining what nu-
clide(s) are evident in the spectrum even when excessive gain shift precludes success-
ful NID analysis.
True Energies (Nuclide)

The True Energies list box lists the energies and their associated nuclides in the Source
of True Energies you selected. By default, all of the energies from the NID Analysis
Results or from a Certificate File are initially selected; none of the energies from a Nu-
clide Library are initially selected.
• The Select All button selects all of the listed energies.
• The Clear button deselects all of the listed energies.

• Click on a single energy to select or deselect it.
The Data Plot

Data points for selected energies are displayed and plotted as True Energy (X-axis) vs.
Energy Shift (Y-axis). The energy shift plotted at each matched true energy is the dif-
ference between the true energy and the corresponding matched found energy.
The solid line represents the fit to the data points and the dashed lines above and be-
low it represent the Eff. Match Tolerance set in Calibration Setup (page 19).

If the solid line is sloped, gain has shifted. If the solid line doesn’t pass through the or-
igin, zero has shifted. A perfect energy calibration will have a flat, horizontal line
passing through the origin.
Matched Peaks, NID Results and Unmatched Peaks

Each of the data plot’s flags is enabled/disabled via the checkboxes below the plot
(Figure 36). Checking a box places its flag at relevant locations in the data plot and
displays its indicator at the top of the plot.
• NID Results are indicated by a blue triangle
• Matched Peaks are indicated by a white square
• Unmatched Peaks are indicated by a green diamond
No Peak at Cursor
When the mouse cursor is not over a peak in the data plot, No Peak at Cursor is dis-
played below the plot (Figure 34 on page 42).
Peak at Cursor
When the mouse cursor is over a peak, it will change to a +

and the No Peak label
will change to the peak’s true energy and the amount of shift of that energy away from
a perfect energy calibration (Figure 36).
Figure 36 Peak Data Displayed
Data Text Box

The Data Text Box shows the data similar to the Auto Gain Adjust dialog’s Data Text
Box (page 54). These evaluation results are concatenated with any previous results
during the current session.

Calibrate Menu
Key data to focus on includes the reported reliability of the results, evaluated percent
gain shift and corresponding shift/FWHM fraction. Review the table of energy
matches to assess whether the match results and evaluated gain shift seem logical. The
shift/FWHM fraction(s) provide an indication of whether NID analysis should be suc-
cessful, given the NID energy tolerance used for the analysis (when specified as
FWHM).
Fix File Gain

Click the Fix File Gain button, which is enabled only for file datasources, to execute a
File Gain Adjustment (page 56) with the calculated energy calibration as the current
energy calibration and the datasource calibration as the goal energy calibration.
This causes a rebinning of the spectrum to make the current energy calibration valid
and should be performed only when the evaluated gain shift is deemed excessive. Al-
ternatively, the datasource can be recalibrated outside of the Gain Evaluator (perhaps
aided by Save New CAL File, below). In either case, the altered datasource would re-
quire a new analysis that reflects the changes. Detector datasources can be corrected
via recalibration (see Save New CAL File) or gain adjustment via Auto Gain Adjust
(page 48).
Save New CAL File

Click the Save New CAL File button to save the calculated energy calibration in a
new calibration (CAL) file.
This saved CAL file can then be loaded, outside of the Gain Evaluator, to establish a
new, corrected energy calibration for the datasource (and perhaps other datasources
known to have the same energy calibration/gain shift). Alternatively, the datasource
can be rebinned to make the current energy calibration valid using Fix File Gain,
above. In either case, the altered datasource would require a new analysis that reflects
the changes.
ReEvaluate
Click the ReEvaluate button to perform another evaluation on the current datasource
using the selected energies. The results will be displayed in the plot and the Data Text
Box.
Since the interactive version of the Gain Evaluator initializes with the current NID
analysis results, when available, using a different or altered source of true energies re-
quires a re-evaluation.

Auto Gain Adjust

When the gain of a measurement system changes between the energy calibration ac-
quisition and other acquisitions, the energy calibration becomes inaccurate for the
other acquisitions. This suite of gain adjustment utilities provides the ability to assess
the magnitude and importance of gain shifts for all datasources (Gain Evaluator) and
to fix the gain shift for active detectors (Auto Gain Adjust) and saved files (File Gain
Adjust).
The routine collects a spectrum, analyzes it for peaks, compares the energy at which
each peak is observed against the “true” energy in a certificate file, then derives the ac-
tual energy calibration equation. Differences between actual and desired energy cali-
brations drive the hardware adjustments.
The Auto Gain Adjust and Gain Evaluator functions primarily correct and assess gain
shift (errors in the slope term of the initial energy calibration). Though some error in
the initial equation's other calibration terms (zero/intercept and quadratic/higher order)
can be accommodated, you should ensure that these other terms are reasonably accu-
rate to obtain the most stable, reliable results.
The AGA Routine

1. Acquires a spectrum for the specified preset live time.
2. Performs a peak search using the specified ASF algorithm.
3. Matches the found peak energies to the energies in the specified certificate.
A weighted average gain correction factor (and possibly a zero correction) is
calculated.
• If the average gain correction factor satisfies the specified Percent Gain
Shift Tolerance, adjustment is complete (specifying double convergence
requires this to occur twice successively).
• If the average gain correction factor does not satisfy the specified Percent
Gain Shift Tolerance, the gain (and possibly the zero) is adjusted appro-
priately.
4. Clears the spectrum.
5. These steps are repeated until one of the following occurs:

• The routine completes successfully.
• The specified maximum number of iterations is reached.
• An acquisition is manually aborted.

Calibrate Menu
Setting Up AGA
The Auto Gain Adjust Setup screen is used to select the parameters to be used by the
routine (Figure 37).
Figure 37 Auto Gain Adjust Dialog
Certificate File
Selects the Certificate File (CTF) to be used for the gain adjustment calculations. The
certificate file contains the energies and emission rates of the calibration source. If the
detector datasource is efficiency corrected by the specified Peak Search ASF, the
emission rate data will be used as an aid in properly matching true energies with found
peaks.
Successful gain adjustment requires that the true energies listed in the specified certifi-
cate file correlate to at least half of the peaks found by the specified peak search ASF.
Successful ADC zero adjustment requires that at least one low energy (less than 1/3
that of the highest certificate energy) in the certificate file be matched with a found
peak. In addition, the ADC must allow computer-controlled adjustments and its zero
adjustment must have been specified during setup. Otherwise, only the gain will be ad-
justed.

Ideally, the certificate file should list only those energies that correspond to all of the
found peaks. However, the number of input true energies must be no more than twice
the number of found energies and contain energies that actually correspond to most of
the found peaks.
If the number of input true energies is more than twice the number of found peak ener-
gies, peak matching and gain adjustment will fail.
The routine can't resolve more than one nuclide at the same energy in the source of
true energies, so matches will not be made at any true energy that is repeated. Best re-
sults will be obtained if all of the input true energies have a relative separation of at
least several FWHM. It is also desirable to have peaks that span the full range of the
spectrum.
Peak Search ASF

Selects the Analysis Sequence (ASF) file to be used for the gain adjustment calcula-
tions. For successful execution of AGA, the selected sequence must include at least a
peak locate step and a peak area step, such as Peak_sho.asf, installed with Genie
2000.
Ensure that the peak search parameters are optimized to locate those peaks that corre-
spond to the true energies in the specified certificate file while locating as few extrane-
ous peaks as possible.
If the specified ASF includes an efficiency correction (which requires the detector to
be efficiency calibrated to the source specified in the certificate file), the emission rate
information is used with measured count rate data to help match found peaks to certifi-
cate lines. Otherwise, only the energy information is used for matching.
Single/Double Convergence
Select either Single or Double convergence to determine whether the routine com-
pletes successfully after getting the average gain correction factor to satisfy the speci-
fied Percent Gain Shift Tolerance either once or twice, successively. Double
convergence may minimize any possible overshoot or undershoot bias, but requires
more iterations.
Iteration Limit
Specify the maximum number of iterations that can be performed. If convergence is
not obtained before the specified limit is reached, the algorithm will stop with an error.
The typical number of iterations required to reach convergence depends on the Preset
Live Time as compared to the source intensity and the Percent Gain Shift Tolerance.
Reasonable settings usually result in convergence within 3 iterations, so 5 might be a
typical Iteration Limit setting.

Calibrate Menu
Preset Live Time

Select the live time in seconds that each iteration’s data acquisition is to be performed.
This acquisition time should be long enough to provide adequate statistics for a suc-
cessful peak search analysis.
The acquisition time may typically range from 10 seconds to several minutes, depend-
ing on the source intensity and desired Percent Gain Shift Tolerance. A typical button
source in the 37 Bq (1 µCi) range placed at the detector will probably provide suffi-
cient counts (depending on branching ratios) after about 30 seconds. Optimizing the
Preset Live Time may initially require some experimentation.
Percent Gain Shift Tolerance

The Percent Gain Shift Tolerance is the percent deviation that the average gain correc-
tion factor can deviate from unity after a successful gain adjustment.
Given sufficient acquisition time to adequately determine peak centroids, a Percent

Gain Shift Tolerance of 1% or less for high resolution (HPGe) detectors and perhaps
up to several percent for low resolution (NaI) detectors is usually a good starting point.
Optimizing the Percent Gain Shift Tolerance in conjunction with the Preset Live Time
may initially require some experimentation.
Adjust Zero
Check the Adjust Zero box to cause the ADC zero to be adjusted after each iteration.
The checkbox is enabled only when the ADC allows computer-controlled zero adjust-
ments. A zero adjustment cannot be performed unless the lowest matched energy is
less than 1/3 of the highest matched energy.
Note: A shift in zero tends to be much less likely than a shift in gain. Unless a
zero shift is suspected, it is recommended that Adjust Zero not be specified.
QA Transfer Before/After
Check the Before box to transfer data from the first iteration to the specified QA File.
Check the After box to transfer data from the successfully completed iteration to the
specified QA File. You may check either box or both boxes.
Specifying the Before box allows tracking the amount of pre-correction gain shift with
the first iteration. Specifying the After box allows tracking any residual, post-correc-
tion gain shift with the successfully completed iteration. Specifying both allows track-
ing of the amount of correction actually applied.

QA File
Enabled only if the Model S505 Quality Assurance Software is installed on your sys-
tem. Use this field to Browse for the QA file to which the adjustment data is to be
transferred. This file determines which CAM parameters are extracted from the
datasource for archiving. For more information, please refer to the Model S505 Quality
Assurance Software User's Manual.
Execute
When you click the Execute button, you’ll be told that executing this routine will
overwrite your existing certificate file data with the data in the specified certificate
file. When you click OK, the routine will start and the Auto Gain Adjust Status win-
dow (page 52) will open.
Note: The routine can usually determine which amplifier you’re using. If it can’t,
you’ll be asked to specify the amplifier type.
Save
After executing the AGA routine, click the Save button to save the current parameters,
both current setup parameters and any adjusted hardware settings, to the current detec-
tor’s MID file.
Any adjustment already made will be retained only after saving. Canceling or closing
the dialog without saving will cause hardware settings to revert to their original values.
Cancel
If the current parameters have not yet been Saved, clicking the Cancel button will re-
set all parameters to their initial values, and close the dialog.

Calibrate Menu
Auto Gain Adjust Status

The Auto Gain Adjust Status window (Figure 38) shows you a live-time update of the
gain adjustment while it’s in progress. Analysis results from each iteration/acquisition
are listed in order in the Data Text Box in the lower half of the window. If you would
like a record of the contents of the Data Text Box (described on page 54), click the
Print Report Now button.
Figure 38 Auto Gain Adjust Status
Cancel/Abort
Clicking the Cancel/Abort button, enabled only if a gain adjustment is in progress,
stops the routine and returns to the setup dialog. Any adjustment already performed
will only be retained after saving. Canceling or closing the setup dialog without saving
will cause hardware settings to revert to their original values.
Print Report Now

Only the data from the last iteration is saved to the datasource after leaving the AGA
Status window; data from previous iterations is not retained.
To create a record of all iterations, click the Print Report Now button.

Return to Setup/Save
Click the Return to Setup/Save button, enabled only when a gain adjustment is not in
progress, to Return to the AGA setup screen, where you can Save the current settings
and parameters. Adjustments are retained only when the Save button in the setup
screen is clicked.
General Information
The upper part of the AGA Status screen displays general information about the cur-
rent AGA session.
Status – current status may be In Progress, Completed Successfully or Failed

(iteration limit reached or communication failure).
Initiated – the date and time when the adjustment was started.
Acquisition – the current live time and preset.
Iteration – the current iteration and iteration limit.
% Gain Shift – the current percent gain shift and percent gain shift tolerance.
Gain
Initial – the amplifier gain before any adjustments are made; not changed by
AGA.
Current – the gain which was used to acquire the data displayed in the
report; changes with each iteration.
Calculated – the gain to be used on the next iteration; changes with each
iteration.
Zero
Initial – the ADC zero before any adjustments are made; not changed by
AGA.
Current – the ADC zero value which was used to acquire the data displayed
in the report; changes with each iteration.
Calculated – the ADC zero value to be used on the next iteration; changes
with each iteration.
Data Text Box

The text box in the lower half of the AGA Status screen (Figure 38) displays the con-
catenated data from all iterations as tabular data and gain adjustment data.
Tabular Data
• True and Found energies in the first two columns, with unmatched energies
indicated by dashes.
• Matches are aligned, showing the resulting gain Correction Factor in the third
column.

Calibrate Menu
• The fourth column lists the ratio of the energy shift, calculated from the
evaluated energy calibration versus the current energy calibration, to the local
FWHM.
Gain Adjustment Data

Input is considered sufficient if the number of supplied true lines is at least half
the number of found peaks. This makes it likely that the true pattern will be
dominant, reducing the chances of false matches.
Matching is considered sufficient when the number of peak-line matches is

considered statistically significant. Statistical significance is determined when
the number of successful matches compared to the number of possible matches
(true energies supplied) exceeds that expected for a normal distribution within
the determined number of standard deviations. The determined number of
standard deviations is provided by the listed Tolerance Factor. The required
threshold for statistical significance has a maximum of 0.75 to allow for up to
25% spurious input true energy lines.
Output is considered reliable when both the Input and Matching are sufficient.
Reliability must be established before Auto Gain Adjust performs any hardware
adjustments in a given iteration.
Tolerance Factor is the minimum number of standard deviations of the energy

uncertainties required to obtain the maximum number of unambiguous peak-line
matches. The higher the tolerance factor (the greater the number of standard
deviations) required for the matches, the less stringent the matching process and
the more likely that inappropriate matches might be made and therefore the more
restrictive the criteria to consider Matching sufficient.
Average Shift/FWHM Fraction gives the average from all of the listed energies
and indicates the required NID Tolerance (FWHM) to be able to perform a
successful NID analysis. While this gives the average value for all of the found
energies as a general characteristic, the individual values given for each line in
the tabular data indicate which lines in particular might have trouble being
properly identified via NID analysis.
Percent Gain Shift Tolerance is the measured Percent Gain Shift that must be
attained to have a status of Completed Successfully. The measured shift must be
less than the tolerance value.
Percent Gain Shift is calculated from the weighted average of all of the
correction factors of the listed matches and indicates how much gain has shifted.
Each correction factor is weighted according to respective uncertainties.
Datasource Energy Calibration indicates the current energy calibration

equation.

Calculated Energy Calibration is determined using the true energies and their
matched peak channels. The current energy calibration quadratic term, if any, is
kept constant during the fit.
File Gain Adjust

File Gain Adjust (Figure 39) is available only for file datasources. Executing this rou-
tine shifts the current file’s spectral data so that it matches the specified “goal” energy
calibration instead of the current energy calibration. File Gain Adjustment makes it
easier to add, strip or compare spectra.
Figure 39 The File Gain Adjust Dialog
Current Energy Calibration

This box displays the energy calibration equation of the current datasource.
Goal Calibration File

Browse for the CNF file or CAL file containing the calibration equation which you
want to match the current data source’s equation to.

Calibrate Menu
Goal Energy Calibration

When the Goal Calibration File has been specified, this box will display the file’s en-
ergy calibration equation.
Reanalyze After Adjustment

Check this box to reanalyze the current datasource, using the specified ASF file, after
the adjustment has changed the spectrum. Reanalysis is recommended because the cur-
rent analysis results may not be accurate for the altered spectrum.
ASF
Specify the ASF file you want to use for the Reanalyze After Adjustment selection.
Load
Selecting Load displays a dialog screen (Figure 40) which permits you to select a cali-
bration file (.CAL) to be loaded into the datasource being operated on. You can choose
to load the source’s Energy/Shape data, Efficiency data, or both.
Figure 40 Load Calibration Dialog
The Info button displays a dialog box which shows descriptive information for the
currently selected file.

Store
Selecting Store displays a dialog screen which prompts you to save the current cali-
bration into a .CAL file (Figure 41). This file can later be retrieved through Cali-
brate | Load. An Efficiency Geometry ID is required and must be entered. You can
enter an optional Calibration Description to be saved with the file.
Figure 41 Store Calibration Dialog
Display Menu
The Display menu contains several functions for the data display: Expand, Scale,
Compare, ROIs, and Preferences.
Expand
The expanded display, shown in Figure 42, is a split-screen display, with the whole
spectrum in the lower half of the display and the expanded portion in the upper half.
The Expand window may be resized by placing the mouse over the splitter bar be-
tween the main spectrum window and the expand window. Then click on the left
mouse button and move the mouse while holding the button down.

Display Menu
Figure 42 A Typical Expanded Display
When the expand window is the desired height release the mouse button. The mini-
mum height for the expand window is 50 pixels. Note that Expand and Compare (page
60) can be enabled simultaneously.
Expand On
The Expand mode can easily be turned on by clicking on the Control Panel’s Expand
On button or by pressing the F8 key. You can also choose Display | Expand to turn
the expanded display mode on or off.
Expand Off
The Expand mode can easily be turned off by clicking on the Control Panel’s Expand
Off button or by pressing the F8 key. You can also choose Display | Expand to turn
off the expand function and return the display to the normal state.
The Expanded Spectrum

Spectrum expansion takes place around the current cursor location. The spectrum’s ex-
panded data is the data inside the “rubber rectangle” (dash-outlined box) in the lower
half of the display.
The expanded half of the display can be moved through the spectrum by putting the
mouse pointer inside the rubber rectangle (in the lower half) and dragging it to a new
location. When the mouse pointer is inside the rubber rectangle, it will change to a
four-way arrow, as seen in Figure 42.

The rectangle can be resized by moving the mouse pointer to an edge of the rectangle.
The mouse pointer will change to a outlined arrow with two heads. Using the cursor,
the rectangle can be grabbed at a corner or side and stretched to a new height or width
(or both).
Scale
The Scale menu lets you select the method of setting the display’s vertical full scale
(auto or manual) and the scale type (linear or log). The scale type you choose can be
saved as a permanent setting; see “Preferences” on page 63.
Manual
Manual lets you adjust the display’s vertical full scale, either by using a mouse to
change the scroll bar at the right side of the spectrum display or by pressing the key-
board’s up arrow or down arrow key. Pressing the F5 key will toggle between Manual
and Auto.
Auto
Selecting Auto lets the program automatically set the display’s vertical full scale
(VFS). As the spectrum grows, the VFS is automatically reset to show all of the data.
Pressing the F5 key will toggle between Auto and Manual.
Note that if you use the scroll bar while Auto is enabled, the program will change the
scale mode to Manual.
Linear
Linear defines the vertical scale of the display as a linear scale.
Log
Log defines the vertical scale of the display as a logarithmic scale.
Compare
The Compare command lets you turn the compare function on or off and, when on,
lets you position the compare spectrum by specifying its vertical full scale (VFS).

Display Menu
On
Selecting On displays a dialog box (see Figure 43) which allows you to visually com-
pare the current, reference, spectrum with spectral data from another open datasource.
This function is not available if only one datasource is open. Note that Compare and
Expand (page 58) can be enabled simultaneously.
Figure 43 The Compare Dialog
The spectrum selected for compare will automatically be energy normalized to the ref-
erence spectrum. That is, the compare spectrum’s energies will be aligned with the
same energies in the reference spectrum.
Once the compare datasource is selected, you’ll see the compare spectrum displayed in
the currently selected compare spectrum color (“Preferences” on page 63) just above
the reference spectrum.
If you change the reference datasource by selecting a different spectrum, the Marker
Info status page information changes accordingly. Only one energy calibration (that of
the reference spectrum) is meaningful for the set of compared spectra.
Move the Compare Spectrum

When Compare has been turned on, you can move the compare spectrum by clicking
on the VFS box in the upper right-hand corner of the display window (the VFS box
will change to the color of the compare spectrum) or by selecting Display | Compare
VFS. The mouse cursor will change to a solid double-headed vertical arrow. Use the
mouse or the cursor keys to position the compare spectrum anywhere within the spec-
tral display.

When the compare spectrum is enabled, the VFS scroll bar controls the compare spec-
trum’s scale. With the reference spectrum enabled (VFS box returned to its original
color), the VFS scroll bar controls the reference spectrum’s scale.
Off
Select Off to disable the compare mode and return to the current display mode, normal
or expanded, whichever was in effect before Compare was turned on.
VFS
When Compare has been turned on, selecting VFS will let you position the compare
spectrum vertically within the spectral display as described in “Move the Compare
Spectrum” on page 61. It also allows independent VFS control of the compare spec-
trum.
ROIs
The choices offered by the ROI menu are: Add or Delete an ROI, Clear All ROIs, and
Load or Store ROI file.
Add ROIs
Select Add ROIs or press the keyboard’s INS key to enter an ROI between the current
marker positions. The ROI will be of the current ROI type as defined in the Prefer-
ences dialog (page 63).
Auto ROI
Select Auto ROI or press the keyboard’s CTRL+INS key to add an ROI at the current
cursor position. The ROI’s width will be determined by the current energy and shape
calibration. The left channel will be 2 FWHM and 1 Low Tail to the left of the cursor.
The right channel will be 2 FWHM to the right of the cursor. The ROI will be of the
current ROI type defined in the Preference’s dialog.
Delete ROIs
Select Delete ROIs or press the keyboard’s DEL key to delete the ROI between the
markers. The item is disabled if the markers are not positioned at the limits of a previ-
ously defined ROI.
Clear All
Selecting the Clear All command clears all ROIs in the current database.

Display Menu
Load
Selecting Load displays a dialog box which lets you select a datasource whose ROIs
are to be loaded into the current datasource. These ROIs will replace the currently de-
fined ROIs, if there are any. Select the “By Energy” check box to load ROIs by en-
ergy. This will attempt to use the energies stored in the ROI file rather than the
channel values. If the check box is not selected or those values are not defined then the
ROIs will be loaded by channel value. Note that only ROI files stored using Store
ROIs will contain energy values.
Store
Selecting Store displays a dialog which lets you select the name of a datasource which
will be used to store the currently defined ROIs. Note that ROI files created using
Store ROIs will now store ROIs by energy and channel. This allows you to load ROIs
using the energy values if so desired.
Display Preferences
Select Preferences to reconfigure the display with your own settings (Figure 44).
Figure 44 Display Preferences Dialog
Save
You can Save these preferences so that your display will always be set the way you
want it to be. In addition to the settings shown on this screen, selecting Save will save
the display’s Scale Type (page 60), the chosen Status Pages (page 69), and the Report
Window’s size (page 121).

OK
Selecting OK will use the settings only during the current session; they will not be
saved for future use.
Default
The Default button resets all parameters to the factory default state.
Edit Colors
You can change the displayed colors for the:
• Spectrum background
• Reference Spectrum
• Compare Spectra
• ROI type
• Peak Labels
ROI Type
Selecting an ROI type by number allows you to select both the color of each type and
the type itself. For instance, selecting type 3 means that all of the ROIs you enter from
now on will be known as type 3. You may use any combination of the four types and
colors for ROIs which you add to the spectrum.
Note that the Peak Area Analysis algorithm sets regions around the peaks when it is
run. If you selected “Show ROIs in MCA View” in the algorithm’s dialog box, these
ROIs will replace the currently displayed ROIs. The type and color of each of these
ROIs depends on the Peak Area Analysis algorithm used. “Peak Area” on page 80 dis-
cusses the Peak Area routines and describes how they use ROI colors.
Peak Labeling
You can add two kinds of peak information to the spectral display:
• The Nuclide lD labels for identified ROIs are derived from the chosen Nuclide
Identification Source (page 66).
• The Peak Information bubble, which can be seen when the peak cursor is in an
ROI.
Label Color
In Edit Colors, select Peak Labels to assign a text color to the Nuclide ID labels and
the Peak Information bubble’s text.

Display Menu
Display Nuclide ID on Spectrum

Check the Display Nuclide ID on Spectrum checkbox to add a Nuclide ID label above
every identified peak. Multiple labels will be attached to a peak if more than one nu-
clide can be associated with that peak.
Note: When data acquisition is active, the label will appear only at the peak cursor.
Figure 45 shows Nuclide ID labels on the peaks and Peak Information data for the sec-
ond 60Co peak in the NBS Standard spectrum.
Figure 45 Nuclide IDs and Co-60 Peak Information
Ascending
Choose Ascending to show Nuclide ID labels with their text oriented bottom-to-top.
Descending
Choose Descending to show Nuclide ID labels with their text oriented top-to-bottom.
Display Peak Information

When Display Peak Information is checked, moving the mouse cursor over an identi-
fied peak will display the peak’s Nuclide ID, Energy and Net Area with percent error
in a bubble (Figure 45). If the Show Activity checkbox (below) is checked, the peak’s
activity will also be displayed.

• The Energy Units (page 66) displayed in the bubble are those specified for the
entire system.
• The Activity Units displayed in the bubble are chosen in Interactive NID (page
72). The activity value will be correctly displayed for the selected unit but the
unit itself is not displayed.
The Library Lines and Analysis Results radio buttons are enabled only if one of the
Peak Labeling checkboxes is checked.
Library Lines
Choose Library Lines to display peak bubble information from the Nuclide Library
chosen in Interactive NID setup (page 72). When you use Library Lines, the
bubble’s Activity values will be estimated.
Analysis Results
Choose Analysis Results to display the Activity from the current NID results for
this datasource.
Show Activity
Check Show Activity to add Activity data to the Peak Information bubble (Figure 45).
This checkbox is enabled only if Display Peak Information is checked.
Energy Units
Select the Energy Units to be used for reporting energy in the display. Select Other to
use the calibration units and conversion factor stored in the current datasource.
Plot Mode
Normal shows a maximum of 1024 data points. For example, in a 4K spectrum, the
plot routine considers groups of four channels at a time and displays the channel in
each group which has the highest number of counts. Note that for spectra with more
than 1024 channels, selecting Full will slow down the display update rate.
• Full shows a data point for every channel in the spectrum being viewed.
• Envelope shows the normal plot with the data points connected.
• Fill shows the envelope plot with a color fill of the data.

Display Menu
Update Information
The Update Rate can be set for the number of seconds between screen updates of
spectral data during data acquisition. The range is 0 (as quickly as possible) to 60 sec-
onds, with the actual rate affected by how busy the processor is at the end of any given
update interval. A value of 3 to 5 is usually best, allowing an operator’s key presses or
mouse movements to be serviced promptly.
Real-Time Expand Update

If the Real-Time Expand Update checkbox is selected, the expand window will re-
fresh as the expand rectangle is moved in the main spectral display. If the box is not
checked the expand window does not update until the mouse movement is complete.
Spectrum Labels
These selections let you add x- and y-axis gridlines to the spectral display and
tickmarks to the x- and y-axes of the display.
X-Axis Ticks/Labels
Selecting X-Axis Ticks/Labels creates X-Axis labels on the spectrum display. These
may be displayed in terms of Channel or Energy. See X-Axis as Energy.
X-Axis Gridline
Selecting X-Axis Gridline creates X-Axis gridlines on the spectrum display.
Y-Axis Ticks/Labels
Selecting Y-Axis Ticks/Labels creates Y-Axis labels on the spectrum display.
Y-Axis Gridline
Selecting Y-Axis Gridline creates Y-Axis gridlines on the spectrum display.
X-Axis as Energy
Selecting X-Axis as Energy displays X-Axis labels in terms of energy. If this is not
selected, the X-Axis will be displayed in terms of channel.
MCA View
The MCA View selections let you modify the appearance of the application’s interface
and select the data it displays.
MCA-Only Menus
Select the MCA-only menus checkbox to remove the Analyze menu from the applica-
tion’s menu bar and the Efficiency items from the Calibrate menu.

Control Panel Shown

Removing the check from the Control Panel checkbox will remove the Control Panel
from the display, leaving more room for the spectrum
Toolbar Setup
The Toolbar Setup dialog screen (Figure 46) allows you to tailor the display of the Ac-
quisition and Analysis toolbars. The dialog is divided into three panes: Toolbars,
Commands, and Customize Buttons.
Figure 46 Toolbar Setup Dialog
The Toolbars pane allows you to create, rename, and delete toolbars:
• To create a new toolbar, select the New button. This will prompt you to input a
name for the toolbar. The new toolbar will initially be empty.
• To rename a toolbar, highlight it in the list and edit the name in the edit box
below the list.
• To delete a toolbar, highlight it in the list and select the Delete button.
You may also enable/disable the Tooltips and Cool Look features of the toolbar.

Display Menu
The Commands pane allows you to customize the command buttons that will appear
on your toolbars. The list on the left contains a variety of categories of commands or-
ganized in a similar fashion as the main menu. Selecting a category will change the
command buttons that appear in the Button area of the pane. Selecting a command
button will show that button’s description in the Description field. To modify the
toolbars:
• To add a command button to a tool bar, select the button you want` to add from
the Buttons area of the pane. Then, hold the left mouse button down, drag the
command button to the exact place on your toolbar you wish to place it. Then
release the left mouse button.
• To remove a command button from a toolbar, select the button from the toolbar
and drag it off the toolbar. Then release the left mouse button.
• To add a separator between command buttons on your toolbar, select the
command button you wish to have on the right of the separator and drag it
slightly to the right.
The Customize Button pane allows you to associate certain command buttons with
Analysis Sequences and Executable programs. There are 10 special “Analysis” buttons
and 10 special “Executable” buttons. These can be added to any toolbar from the
Commands pane. Then, using the Customize Buttons pane, select the appropriate item
from a list box and:
• To change an Analysis Sequence button select the sequence from the

drop-down Analysis Sequence combo box.
• To change an Executable button edit the command line in the Executable edit
field. To browse for a specific program use the Browse button.
Select OK from the dialog will confirm all changes. Cancel will discard all changes.
The settings only be permanently saved if the Save button is selected in Display
Preferences. Otherwise the toolbars will return to the last saved state upon the next
invocation of the Acquisition and Analysis window.
Status Page Shown

Unchecking the Status Page Shown checkbox removes the Status Page from the dis-
play, leaving more room for the spectrum
Checking the Status Page Shown checkbox lets you click the Status Pages button to
choose which pages will be displayed (Figure 47).

The Status Pages you choose can be saved as a permanent setting; see “Display Prefer-
ences | Save” on page 63.
Figure 47 Selecting the Status Pages
Note that some of the data shown on the Status Pages is the result of a rough calcula-
tion for the region between the markers. This means that this displayed data may not
agree with the data you see in a report generated by your analysis application.
Marker Info
The Marker Info status page includes data related to the current Region of Interest
(ROI): left and right marker channel and energy, centroid channel and energy, area
and percent error, FWHM and FWTM, Gaussian ratio, ROI type, and integral.
The calculated values centroid, area, percent error, FWHM, FWTM, and Gaussian ra-
tio are computed only when the size of the current ROI meets the following criteria:
Number of Spectral
Size of ROI
Data Channels
256 ≤ 256
512–2048 ≤ 512
> 2048 ≤ 1024

Display Menu
Time Info
The Time Info status page includes: acquire start time, dead time percentage, compu-
tational preset region, elapsed and preset values for the live time, real time, and com-
putational presets.
Sample Info
The Sample Info status page includes sample-related information: Title, ID, sample
type, quantity and units, sample geometry, geometry id, and buildup type.
Calibration Info
The Calibration Info status page includes energy and shape calibration information:
energy equation, FWHM equation, low tail equation and efficiency/error at cursor po-
sition.
Display Info
The Display Info status page includes data related to the current display window and
the current ROI defined by the markers: the display window’s start and end channels
and their energies, and the display VFS. The current ROI’s width, net cps, and total
cps are also shown.
If Expand is on, the display window data is for the expanded window. If Compare is
on and the compare spectrum is currently selected, the data is for the compare spec-
trum.
Input Info
The Input Info status page includes data related to the configuration of the currently
open input: number of channels, acquisition mode, and the type of MCA, Amp, ADC,
and HVPS.
User Info
The User Info status page includes six extra CAM parameters which can be used for
special purposes: CAM_T_DISSTR1 through CAM_T_DISSTR6. If none of these
CAM parameters have been defined, this screen will be blank.
Nuclide Info
The Nuclide Info status page includes estimated nuclide information for the current
cursor channel: Nuclide, Energy, Half-life and Percent Yield. If the cursor is within an
ROI then the FWHM, Area, and estimated Activity is also displayed.
Operations
If Ask to Save on Clear is enabled, you’ll be asked to save changes when clearing a de-
tector’s spectrum. If this option is disabled then the clear will be done unconditionally.

Interactive NID
The Interactive NID Setup dialog (Figure 48) lets you choose the nuclide library to be
used for the Nuclide Identification Source (page 66), as well as setting the tolerance
for searching that library, and the activity units to be used in the Peak Information
window.
Figure 48 Interactive NID Setup
Tolerance
This is used to specify the value to be used in deciding if an energy line in the given li-
brary matches the peak being searched for.
Energy/FWHM
The energy units for the Peak Match Tolerance value. Choose Energy for a fixed tol-
erance or FWHM for a variable tolerance.
Peak Match
Enter the Tolerance value for peak matching. If you chose Energy, enter the value in
keV. If you chose FWHM, the tolerance is the entered value multiplied by the FWHM
calculated at the energy of the peak.
NID Library
Select the default Nuclide Library to be used when you select Library Lines for the
Nuclide Identification Source (page 66).
Activity Units
The selected Activity Unit determines the activity units used for reporting in the Peak
Information window.

Analyze Menu
When you choose one of the standard activity units (μCi, pCi, Bq, kBq, mBq), the cor-
rect Conversion Factor, referenced to 1 μCi, is automatically supplied. If none of the
standard units is acceptable, select Other, then type a label in the text box and enter
the unit’s Conversion Factor.
Analyze Menu
The Analyze menu lets you select and execute or abort (stop) a predefined sequence of
analysis phases or a single analysis phase, such as “Acquisition”. A phase includes all
of the parameters the needed for its successful execution. A sequence is a list of
phases, including the algorithms for a given phase, processing parameters required for
each algorithm, and so forth, needed to perform a given set of analyses and generate
reports.
Please refer to “Analysis Sequence” on page 109 for information on creating and edit-
ing a sequence.
Execute Sequence
Select Analyze | Execute Sequence to see a menu of all currently defined analysis se-
quences on your system. Figure 49 shows the Execute Sequence Menu. Selecting one
of the sequences will execute it.
Figure 49 The Execute Sequence Menu
Abort Sequence
Selecting Abort Sequence allows you to abort execution of the current sequence.
Note that the sequence may not stop immediately; it will continue until the analysis
step already in progress has finished.

Analysis Phase Selection

The Analyze menu lists the analysis phases for the S500 Basic Spectroscopy Software,
The S509 Alpha Analysis Software and those associated with other Genie 2000 op-
tions installed on your system. Each item in the menu lets you select an algorithm to
associate with the selected phase, then assign and save the algorithm’s parameters, ex-
ecute the algorithm, or do both.
The following sections discuss each of the phases, their algorithms and the required
parameters. For more detailed information on the algorithms, refer to the Algorithms
chapter in the Genie 2000 Customization Tools Manual.
OK
Selecting OK in the algorithm’s setup screen saves the setup parameters you selected,
but does not execute the algorithm.
Execute
Selecting Execute starts the algorithm using the defined parameters.
Acquisition
The Acquisition phase dialog box in Figure 50 allows you to define default acquisition
parameters to be used when starting data collection on hardware datasources.
Note: The figure shows a typical Acquisition dialog. The controls you see will de-
pend on the MCA you’re setting up.
Figure 50 A Typical Acquire Setup

Analyze Menu
Time Preset
You can set the Live time or Real time preset for the current hardware datasource in
seconds, minutes or hours. Live time and Real time are mutually exclusive, but the
chosen time preset can be combined with any one computational preset (see next sub-
section).
Computational Presets
These presets stop acquisition when a computed value you specify is reached. When a
computational preset is defined, the chosen time preset is still active. The acquire stop
command is issued by the preset that is reached first. If you want to use a computa-
tional preset alone, set the time preset to a very large value, such as 9000 hours. This
insures that the computational preset will be reached first.
Each of the three computational presets are mutually exclusive, but any one of them
can be combined with either time preset.
• None disables computational presets and uses only a time preset.
• Integral is a preset for the integral of any one ROI. The integral’s Value and
the ROI’s Start and Stop Channels must be specified.
• Area is a preset for the area of any one ROI. The area’s Value and the ROI’s
Start and Stop Channels must be specified.
• Counts is a preset for the total counts (Value) in any one channel within the
range specified by the Start Channel and Stop Channel.
MCS Preset
Since MCS is not normally used with Alpha spectra, Sweep Count should be set to 0.
If MCS is used, Sweep Count selects the number of sweeps to be made during multi-
channel scaling data acquisition. Both Time and MCS Presets can be set here, but
which is used depends on the Mode Setup of the hardware input you acquire data
from.
Clear Data/Time
Select the Don’t Clear Data/Time at Start of Acquisition button to leave the data
and time unchanged when acquisition starts in the current session.
Select the Clear Data/Time at Start of Acquisition button to clear data and time at
every start of acquisition in the current session.
Select the Clear Data/Time at Initial Start of Acquisition button to automatically

clear data and time at the first start of acquisition in the current session.

Peak Locate
The Peak Locate phase contains the algorithms which locate the peaks of interest in
the spectrum.
Unidentified Second Difference

The generalized second difference method (Figure 51) locates all peaks in the Search
Region that are significantly above the continuum, as described in the “Generalized
Second Difference Method” section of the Algorithms chapter in the Genie 2000 Cus-
tomization Tools Manual.
Figure 51 Second Difference Peak Locate Setup
Search Region
The search will be performed on the region between the Start and Stop Channels.
Significance Threshold
The second difference algorithm automatically calculates a significance value for each
peak it considers. The larger the peak with respect to the continuum that it rests on, the
larger the significance value.
Only peaks that exceed the Significance Threshold will be accepted as valid. For less
sensitivity, for example to pick out just the large peaks for calibration, the Significance
Threshold may be raised. For more sensitivity, the significance limit may be lowered.
However, experience has shown that significance values below 3.00 produce increas-
ing numbers of false peaks.

Analyze Menu
Add to Existing Results and Tolerance

If the Add to existing results box is checked, each found peak will be compared with
peaks listed in the peak results table. A found peak that is closer to an existing peak
than the specified Tolerance value (either fixed Energy or variable FWHM) is as-
sumed to be the listed peak and will be discarded. A found peak that is farther away
from an existing peak than the specified tolerance is considered to be a separate peak
and will be merged with the existing peak results table. If the “Add to existing results”
box is not checked, the current peak results table will be replaced by this search.
Generate Report
If the Generate Report box is checked, a predefined report will be generated when
this phase is executed and will be displayed in the application’s report window.
User Specified
This method, using the parameters in Figure 52, calculates the peak centroid for each
displayed ROI in the Search Region, as described in the “User Specified Peak Locate”
section of the “Algorithms” chapter in the Genie 2000 Customization Tools Manual.
Figure 52 The User Specified Peak Locate Setup
Search Region
Use MCA View

Select this button to perform the Peak Locate using the ROIs displayed in the spectral
display.

Use ROI File

Select this button to use an ROI file for Peak Locate. Enter the name of the file in the
Use ROI File text box or click on Select and choose a file from the file open dialog
box.

If the Add to existing results box is checked, each found peak will be compared with
peaks listed in the peak results table. A found peak that is closer to an existing peak
than the specified Tolerance value (either fixed Energy or variable FWHM) is as-
sumed to be the listed peak and will be discarded. A found peak that is farther away
from an existing peak than the specified tolerance is considered to be a separate peak
and will be merged with the existing peak results table. If the “Add to existing results”
box is not checked, the current peak results table will be replaced by this search.
Generate Report
Library Locate (Simple)

The Simple Library Peak Locate setup screen is shown in Figure 53. The analysis will
include the library energies included within the Search Region or that are equal to ei-
ther region limit. The current energy calibration will be used to determine whether a li-
brary peak falls within the Search Region.
Figure 53 The Simple Library Locate Setup

Analyze Menu
Search Region
NID Library
The library (NLB) file shown in the NID Library text box is used in this phase’s calcula-
tions and is stored in the current datasource when the phase is Executed. This lets you
use a fixed reference for future calculations. See also Use Stored Library, below.
To use a different library, click Select before Executing the phase and choose a library
file. When the phase is Executed, the selected library will replace the library in the
current datasource.
Use Stored Library

If the Use Stored Library checkbox is selected, the library stored in the current
datasource will be used when the phase is Executed. If Use Stored Library is used for
any previous analysis, then it cannot be used for any succeeding NID analysis. If in-
tended for only one NID analysis step, the Use Stored Library Checkbox can be se-
lected.
If it is cleared, the Selected Nuclide Library will be used when the phase is Executed
and will replace the library in the current datasource.
To use a Library that is stored in a CAM file for multiple analysis steps, (Peak Locate,
Peak Analysys, Error Correction, NID) it should first be extracted from the CAM file
and then saved using the Nuclide Library Editor. This way, it can be chosen during
analysis steps to use a library.

If the “Add to existing results” box is checked, peaks outside the specified Tolerance
(either fixed Energy or variable FWHM) of a peak in the datasource’s peak results ta-
ble will be added to the table. Peaks within the Tolerance of an existing peak will not
be added. If the “Add to existing results” box is not checked, the current peak results
table will be replaced by this search.
Generate Report
Auto Generate ROIs

If this option is selected, then the peak locate algorithm will automatically generate
ROIs based on the FWHM calibration. You can also specify a multiplier to be applied
to the ROI width. In addition, an option for checking for adjacent peaks can be en-
abled – this will flag any peak ROI that may be affected by an adjacent peak.

Peak Area
The peak area phase contains the algorithms to calculate the net peak areas of all peaks
found by the peak locate phase (independent of the peak locate method).
Sum/Non-Linear Least Squares Fit Peak Area

Selecting Sum/Non-Linear LSQ Fit brings up the setup screen shown in Figure 54.
Figure 54 The Sum/Non-Linear LSQ Fit

Setup
The Peak Area Non-Linear Least Squares Fit algorithm calculates peak areas of
multiplets using the fitting method described in the “Peak Area for Multiplets” section
of the “Algorithms” chapter in the Genie 2000 Customization Tools Manual.
It normally calculates the peak areas of single peaks using a summation method (de-
scribed in the “Peak Area for Single Peaks” section of the “Algorithms” chapter), but
you can choose the peak fitting method instead.
This method also automatically determines the region-of-interest (ROI) around each
peak found by the peak locate method in use. Peaks that are close to each other are au-
tomatically grouped into multiplet ROIs and analyzed as multiplets. The method of de-
termining the ROIs is described in more detail in the “Determination of Peak Region
Limits” section of the “Algorithms” chapter in the Genie 2000 Customization Tools
Manual.

Analyze Menu
If the peak locate results already contain ROI definitions, such as after a User Spec-
ified Peak Locate, these ROIs will be used without changes. No multiplet analysis will
be performed. If the peak locate results do not contain ROI definitions (that is, they in-
clude peak centroids only) the ROI limits will be calculated automatically.
Peak Area Region

You can limit the region to be searched by specifying the Start and Stop channels.
Continuum
This parameter is normally set to 0 for Alpha spectra. When used, the specified num-
ber of continuum channels or FWHM multiples are used on both sides of the peak to
establish the continuum under the peak ROIs (this value can also be specified within
Calibrate | Setup). If you have two peaks that are close together, reducing the number
of continuum channels may give better results. If you have poor peak statistics and
there are no other peaks nearby, increasing the number of continuum channels estab-
lishes the continuum more accurately but makes it more likely that close lying peaks
will be considered as a multiplet instead of as a singlet.
Continuum Function
None should always be selected when calculating the peak area of Alpha spectra. The
Linear and Step functions are available but are not normally used for Alpha spectra.
Linear is adequate when a spectrum’s continuum is relatively flat. It is a simple,
straightforward equation that estimates the continuum under the peaks as a trapezoid.
The Step function should be chosen if there are any regions in a spectrum where the
continuum is significantly higher on the left side of a peak region than on the right
side; this function automatically reduces to a flat line if the continuum is flat.
95% Critical Level Test

If the 95% Critical Level test is enabled, the net peak area of a singlet is examined to
see if it exceeds the 95% Critical Level value as described in the “Critical Level
Testing” section of the “Algorithms” chapter in the Genie 2000 Customization Tools
Manual.
Peaks that do not pass this test will be deleted from the peak results table. If the Criti-
cal Level test is not enabled, all peak areas are accepted regardless of their size, even
negative areas.
Fixed Parameters
Selecting the Fixed FWHM Parameter or Fixed Tail Parameter check box causes the
chosen parameter(s) to be used for all multiplet peaks instead of allowing the value to
vary for best fit. If either or both of these check boxes is not checked, the specified pa-
rameter will be allowed to vary.

Fit Singlets
Normally, the Peak Area routine fits only multiplet peaks, but if you check the Fit
Singlets check box, singlets will also be fitted, rather than calculated using the summa-
tion method.
Display ROIs
If the “Display ROIs” check box is checked, the ROIs resulting from the analysis will
be copied to the Display ROIs block in the datasource.
The ROI color conventions are:

Color 1: Singlet peaks
Color 2: Multiplet peaks
Color 3: Not used
Color 4: Not used
Reject Zero Area Peaks

If the “Reject zero area peaks” check box is checked, any peaks with negative or zero
peak areas will be deleted from the peak results table.
Residual Search
When the Perform Search checkbox is selected, the algorithm will examine the current
datasource’s ROIs for “hidden” components in a peak region, those that would other-
wise not be found by the Peak Locate algorithm. A new peak will be added at the
highest residual which is separated from the nearest established peak by at least the
specified Minimum Separation (in FWHM) and the limits for that ROI will be
re-established. This process will be repeated until there are no more peaks to be added.
In most situations, the residual search works best when the Fixed FWHM, Fixed Tail
and Fit Singlets check boxes are selected.
Use DOECAP Rules

When this option is checked, the peak area algorithm will report uncertainties in con-
formance with DOECAP Quality Systems for Analytical Services Revision 2.2 D.4
DOE 27 which states that “Counting uncertainties may be estimated by the square
root of counts except when there are zero (0) counts. In the case of zero (0) counts, the
counting uncertainty is assumed to be one count.”
That is, if the total peak area is zero and the continuum is none, the counting uncer-
tainty will be reported at 1.0 count.
ROI Limits Determination

The Sum/Non-Linear LSQ peak area calculations rely on these three parameters in de-
termining whether multiplets are to be included in an ROI. Peaks that are no farther
apart than the Maximum Number of FWHMs Between Peaks are seen as part of a
multiplet and will be included in the ROI.

Analyze Menu
The calculation of the left and right ROI boundaries is influenced by the Maximum
Number of FHWMs for Left (Right) Limit values. The ROI will not be extended be-
yond these limits even if the data has not leveled out.
Generate Report
Area Correction
The area correction phase contains algorithms to correct the net peak areas before fur-
ther calculations are made.
The Alpha Background Subtract algorithm is used when peaks in the sample
datasource are to be analyzed as singlets. It is commonly used when the calibrated
background datasource has no peaks, which is typical of alpha background spectra.
The Standard Background Subtract is used when peaks in the sample datasource are to
be analyzed as multiplets. To use this algorithm, the calibrated background datasource
must contain the results of a peak area analysis.
Alpha Background Subtract

The Alpha Background Subtract algorithm (Figure 55) allows you to subtract back-
ground regions from peak areas in the current datasource as described in “Subtraction
of Alpha Environmental Background” section of the “Algorithms” chapter in the
Genie 2000 Customization Tools Manual.
Figure 55 The Alpha Background Subtract Setup

Background Subtract
To perform background subtraction, enable the Yes checkbox, then Select the back-
ground (CNF) file.
Once initial background information has been stored into the current datasource, se-
lecting the “Use Stored Background” checkbox will retrieve the background informa-
tion from the open datasource. If this option is not checked, you can select an external
background file.
Note: Background information must contain Peak Search and Area analysis re-
sults.

If the 95% Critical Level is enabled, the net peak area of a peak after the background
is subtracted must exceed the 95% Critical Level value as described in “Critical Level
Testing” section of the “Algorithms” chapter in the Genie 2000 Customization Tools
Manual.
Peaks that do not pass this test are discarded. If the Critical Level test is not enabled,
all peaks are retained even if their areas are zero or negative after the background sub-
tract.
Generate Report

Analyze Menu
Standard Background Subtract

The Standard Background Subtract algorithm (Figure 56) allows you to subtract back-
ground peak areas from matching peak areas in the current datasource as described in
the “Subtraction of Peak Environmental Background” section of the “Algorithms”
chapter in the Genie 2000 Customization Tools Manual.
Figure 56 The Standard Background Subtract Setup
Background Subtract
To perform background subtraction, enable the Yes checkbox, then Select the back-
ground (CNF) file.
background file.
sults.

The 95% Critical Level test may be enabled or disabled for this phase of the calcula-
tions. If the test is enabled, the net peak area of a singlet after the background subtract
must exceed the 95% Critical Level value as described in the “Critical Level Testing”
section of the “Algorithms” chapter in the Genie 2000 Customization Tools Manual.
If the Critical Level test is not enabled, all peaks are retained even if their areas are
zero or negative after the background subtract.

Tolerance
Enter a tolerance value (either fixed Energy or variable FWHM) to define how large a
difference can be allowed between a peak in the current datasource and a peak in the
background datasource and still be considered the same peak.
The tolerance value can also be specified in the Calibration Setup dialog (page 19) as
Peak Match Tolerance.
Generate Report
Reagent Correction
The Reagent Background Subtract algorithm (Figure 57) uses the peak results in the
reagent file to establish the ratios of the net areas of the other peaks to the net area of
the tracer peak. It then subtracts an equivalent fraction from the other peaks in the cur-
rent datasource. The algorithm is described in “Reagent Blank Correction” section of
the “Algorithms” chapter in the Genie 2000 Customization Tools Manual.
Figure 57 The Reagent Correction Setup
This algorithm requires that the reagent file first be analyzed for its peaks using the ap-
propriate peak locate, peak area and environmental background subtract algorithms.
Note that for proper operation, the environmental background subtract must be per-
formed on the sample spectrum before performing the reagent correction.

Analyze Menu
Reagent Background File

Type in the fully specified name of a background (.CNF) file to be used in the subtrac-
tion, or click on Select, then choose a background file from the file open dialog box.
background file.
sults.
Tracer Certificate File

Type in the fully specified name of a tracer certificate (.CTF) file to be used for the
energy of the tracer peak or click on Select, then choose a certificate file from the file
open dialog box.
Tolerance
Enter a tolerance value (either fixed Energy or variable FWHM) to define how large a
difference can be allowed between a peak in the current datasource and a peak in the
background datasource and still be considered the same peak.

If the 95% Critical Level test is enabled, the net peak area of a peak after the back-
ground is subtracted must exceed the 95% Critical Level value as described in “Criti-
cal Level Testing” section of the “Algorithms” chapter in the Genie 2000
Customization Tools Manual. Peaks that do not pass this test are discarded. If the Crit-
ical Level test is not enabled, all peaks are retained even if their areas are zero or nega-
tive after the background subtract.
Generate Report
Efficiency Correction
The Efficiency Correction phase’s Alpha algorithm calculates either the Simple (aver-
age) Efficiency from the calibration or the effective Tracer Efficiency from a tracer
peak. If average efficiency is available from the calibration and the tracer peak infor-
mation is provided, the chemical recovery factor will be calculated as well.
Figure 58 shows that you can choose either Tracer Efficiency correction or Simple Ef-
ficiency correction.

Figure 58 The Efficiency Correction Setup
Tracer Certificate File

If you chose Tracer Efficiency, this text box allows you to type in the fully specified
name of a tracer certificate (.CTF) file to be used for the tracer peak or click on Select,
then choose a certificate file from the file open dialog box. This information is not re-
quired if you chose Simple Efficiency.
Tracer Quantity
If you chose Tracer Efficiency, this text box allows you to type in the amount of the
tracer solution added to the sample (in mL). This information is not required if you
chose Simple Efficiency.
Peak Match Tolerance

If you chose Tracer Efficiency, this text box allows you to type in a tolerance value
(either fixed Energy or variable FWHM) which defines how large a difference can be
allowed between a tracer peak and a peak in the current datasource and still be consid-
ered the same peak. This information is not required if you chose Simple Efficiency.
Generate Report

Analyze Menu
Nuclide Identification
The nuclide identification step contains the algorithms to perform the nuclide identifi-
cation and activity calculations.
Note that the MDA Confidence Factor is used both here and in the Detection Limits
step (page 95). If the Confidence Factor is changed here, the Detection Limits calcula-
tions are affected too, unless the factor is changed again before performing the MDA
calculation.
Tentative NID
The Tentative Nuclide Identification (NID) algorithm (Figure 59) will generate a ten-
tative nuclide identification. The algorithm looks at each of the peaks established by
the Peak Area step of the analysis, and attempts to find a match in the specified nu-
clide library. It uses the specified tolerance to perform the search; all nuclides that sat-
isfy that tolerance are recorded for reporting. The nearest match will be reported first,
followed by any “more distant” matches in order.
Figure 59 The Tentative NID Setup
Tolerance
This is used to specify what value is to be used to decide if an energy line in the given
library matches the peak being searched for. The tolerance can be a fixed energy (in
keV), or variable. If you choose variable (FWHM) the tolerance becomes the number
entered multiplied by FWHM calculated at the energy of the peak.
NID Library

current datasource.
Use Stored Library

lected.
Generate Report
NID
If the current spectrum already includes peak area and efficiency correction results, the
Nuclide Identification (NID) algorithm (Figure 60) identifies the spectrum’s nuclides,
as described in the “Basic Calculations” section of the “Algorithms” chapter in the
Genie 2000 Customization Tools Manual.
Figure 60 The NID Setup

Analyze Menu
NID Range
The identification is limited to the specified NID Range; only peaks within those lim-
its will be considered for identification. Note that though the stop channel initially de-
faults to a large value, the algorithm will only search to the spectrum’s highest
channel.
NID Library
current datasource.
Use Stored Library

lected.
Perform MDA Test

The Perform MDA Test is not normally used with Alpha spectra. In Alpha spectros-
copy, it is most useful in cases where a nuclide has many peaks with small branching
ratios that would result in peaks that are below the MDA level, such as in most low ac-
tivity samples. Enabling this function will ignore small peaks when calculating the
identification confidence so that expected peaks below the MDA will not penalize the
confidence test results.

Inhibit Acquisition-Time Decay Correction

If this option is enabled, decay correction will not be performed during the count time.
Decay correction will still be performed for wait time (the time between sample time
and the start of the count) and for build up time (the time the sample is building up on
a filter), if any.
Note: Decay correction in Genie 2000 is limited to ±66 half lives.
Tolerance Value
You must set the tolerance value in either energy or FWHM units (this value can also
be specified as Eff & Match Tolerance in Calibration | Setup on page 19).
NID Confidence Threshold

The NID Confidence Threshold is used to accept or reject peaks for identification; this
parameter’s range is 0 (low) to 1 (high).
MDA Confidence Factor

In the standard NID, the MDA Confidence Factor is used as the designated MDA con-
fidence during the MDA test only if Perform MDA Test is enabled.
Generate Report

Analyze Menu
NID with Interference Correction

If the current spectrum already includes peak area and efficiency correction results, the
Nuclide Identification with Interference Correction algorithm (Figure 61) identifies the
spectrum’s nuclides and automatically performs an interference correction and
weighted mean calculation on them, as described in the “Basic Calculations” and “Ac-
tivity Corrections” sections of the “Algorithms” chapter in the Genie 2000 Customiz-
ation Tools Manual.
Figure 61 The NID with Interference Correction

Setup
NID Range
The identification is limited to the specified NID Range; only peaks within those lim-
its will be considered for identification. Note that though the stop channel initially de-
faults to a large value, the algorithm will only search to the spectrum’s highest
channel.
NID Library
current datasource.

Use Stored Library

If the Use Stored Library box is selecteded, the library stored in the current datasource
will be used when the phase is Executed. If Use Stored Library is used for any previ-
ous analysis, then it cannot be used for any succeeding NID analysis.
Inhibit Acq-Time Decay Correction

If this option is checked, decay correction will not be performed during the count time.
Decay correction will still be performed for wait time (the time between sample time
and the start of the count) and for build up time (the time the sample is building up on
a filter), if any.
Note: Decay correction in Genie 2000 is limited to ±66 half lives.
Tolerance
This is the tolerance value used when matching peaks between the currently opened
datasource and the specified nuclide library. You can choose to enter this in Energy (a
constant energy value across the spectrum), or in FWHM (the energy varies according
to the FWHM calibration).
NID Confidence Threshold

This is the confidence value used to accept or reject candidate peaks for identification;
this value has a range of 0 (low) to 1 (high).
MDA Confidence Factor

The MDA Confidence factor for NID with Interference Correction is the same that
used for standard NID, except that there is an added function. This factor governs the
allowed uncertainty of the activity results, which must exceed its own uncertainty
times a factor related to the MDA Confidence Factor. The smaller the MDA Confi-
dence Factor, the larger the multiplier. Note that this factor is applied only if the 95%
Critical Level test, which is set in either the Sum/Non-Linear LSQ Fit Peak Area
screen (page 80) or the Standard Background Subtract screen (page 85), is enabled.
Cascade Correction
CANBERRA’s patented Cascade Correction feature lets you correct nuclide activities
for losses or gains due to the cascade summing effect of gamma rays. Cascade Correc-
tion can be enabled/disabled here, in the NID with Interference Correction dialog.
For information on setting up and using Cascade Correction, please refer the Using
Cascade Correction chapter in the Genie 2000 Operator’s Manual.

Analyze Menu
For cascade correction to work, the gamma ray spectrum must include a valid
peak-to-total calibration and a valid efficiency calibration that is free from cascade
summing effects. Refer to the Correcting for Cascade Summing appendix in the Genie
2000 Operator’s Manual for details on correcting an empirical efficiency calibration.
Other components that are necessary for running the cascade correction are the Coin-
cidence library and a Geometry file that contains the source-detector geometry infor-
mation for the given measurement.
If the Perform Cascade Correction box is checked, cascade correction will be per-
formed when the Execute button is pressed.
Generate Report
Detection Limits
The detection limits step contains the algorithms to perform Curie MDA or KTA
MDA (used for German regulatory compliance) and LLD calculations.
The MDA algorithm calculates the MDA values for all the nuclides as described in the
“MDA Calculations” section of the “Algorithms” chapter in the Genie 2000 Customiz-
ation Tools Manual.
If applied to a spectrum collected with a blank sample or in an empty shield, this cal-
culation is equivalent to an LLD calculation.

Confidence Factor
The MDA Setup screen, shown in Figure 62, lets you select the MDA Confidence Fac-
tor, which can be set to any value between 0.1% (high) and 40% (low) for calculating
detection limit values. For instance, to use the NRC 95% confidence factor, you would
enter 5.00% here.
Figure 62 Detection Limit Setup
Note that the Confidence Factor is used both here and for the Nuclide Identification al-
gorithms described in the “Basic Calculations” section of the “Algorithms” chapter in
the Genie 2000 Customization Tools Manual.
If the Confidence Factor is changed here, the NID calculations are affected too, unless
the factor is changed again in the NID Setup screen before performing the NID calcu-
lation.
Perform Variable ROI Width

Selecting this checkbox extends the MDA ROI to the left and right of the expected lo-
cation of the energy line by the number of expected FWHMs entered in the ROI Width
text box. If not selected, 4.0 FWHM will be used for Curie MDA calculations or 1.25
FWHM for KTA MDA calculations.

Analyze Menu
ROI Width
This parameter establishes the width of the ROI as plus and minus the specified num-
ber of FWHMs from the expected location of an unidentified peak. The minimum set-
ting is 0.8 FWHM.
Use Variable MDA Constants

Selecting this checkbox allows the user to specify the values for the Add Constant and
the Multiplier used in the MDA calculations, as described in the “Curie MDA” section
or the “KTA MDA” section of the “Algorithms” chapter in the Genie 2000 Customiz-
ation Tools Manual.
If the checkbox is not selected, the “normal” equation of L D = k2 + 2LC is used. At the
typical 95% confidence level the “normal” equation is equivalent to specifying 2.71
for the Add Constant and 3.29 for the Multiplier.
Add Constant
This parameter specifies the Add Constant used in the MDA calculation if the “Use
Variable MDA Constants” option has been checked.
Multiplier
This parameter specifies the Multiplier used in the MDA calculation if the “Use Vari-
able MDA Constants” option has been checked.
Cascade Correction
When a Cascade Correction is applied to the data in an NID step performed before the
MDA step, the MDA algorithm will take the cascade corrected results into account.
If Cascade Correction was performed in the NID step, the resulting cascade correction
parameters will be displayed here. The names of the Coincidence Library (not
editable) and Geometry Composer GIS files will be displayed and the Perform Cas-
cade Correction checkbox will be enabled.
Generate Report
Post NID Processing

There are two Post NID Processing algorithms: Action Level calculations and Control
Recovery.

Action Level Calculations

Action Level Calculations (Figure 63) are performed on both identified and unidenti-
fied nuclides and will total the number of identified nuclides and unidentified peaks.
These functions are described in the “Post-NID Processing Algorithms” section of The
“Algorithms” chapter in the Genie 2000 Customization Tools Manual.
Figure 63 The Action Level Calcuation Setup
Sum Action Level 1

Specifies Alarm Limits 1 and 2 for the sum of Action Level 1 values for all nuclides.
Sum Action Level 2

Specifies Alarm Limits 1 and 2 for the sum of Action Level 2 values for all nuclides.
Use MDA Values

When this checkbox is selected, the action level calculation will include MDA values
for those nuclides that were not identified, and therefore had no activity values calcu-
lated. If not selected, the action level calculations will not include those nuclides for
which no activity was found.
Use Upper Level Values

When this checkbox is selected, the activity plus its error or the MDA value plus its
error will be used as the upper bound value for the action level calculation. If not se-
lected, action level calculations will simply use activity or MDA values.

Analyze Menu
Generate Report
Control Recovery
The Control Recovery algorithm calculates the chemical recovery of a control sample
(tracer). Refer to Figure 64.
Figure 64 Control Recovery Setup
It performs the following calculation:
C = A / Ac
where
A = activity of nuclide
Ac = certified activity of nuclide
Ac = (E * Vc)/(Cf * Q * K)
Here
E = Activity concentration from the certificate
Vc = Volume of the control added to aliquot
Cf = conversion factor from Bq to uCi

Q = sample quantity
K = decay correction for control isotope
The result, C, is stored in the CAM Parameter CAM_F_NCLCTRLRECOV.
Control Certificate File

Select (browse for) or type in the fully specified pathname of the Control Certificate
file.
Control Volume
Enter the value, in mL, of the volume of the control added to the sample.
Gain Evaluator
The Gain Evaluator can be used with both file datasources and detector datasources. It
does not perform any hardware adjustments. Instead, it allows you to analyze the qual-
ity of the current datasource energy calibration and gain settings, assesses the impact
on NID analysis and make corrective data adjustments, including file gain adjustments
and saving the calculated energy calibration.
Gain Evaluator Setup (Figure 65) asks you to specify the actual (true) energies ex-
pected to occur in the spectrum by selecting lines from the current NID results, a cer-
tificate file or a nuclide library file. These true energies are matched to peaks found in
the resident peak search analysis results.
Figure 65 Gain Evaluator Setup
Output includes the reliability of the peak matching, the percent gain shift, and the re-
sulting energy shift in each found peak as a fraction of the local peak width.

Analyze Menu
The specified datasource must already contain a spectrum acquired from a source with
known true energies.
Note: Use generic nuclide libraries with caution since extraneous true energies
can result in unreliable results and excessive calculation time. Use of a
source-specific certificate file or nuclide library is recommended.
Generate Report
Selecting the Generate Report button generates a report containing a table of data for
all true and all found energies, all matched energies and all found energies, and a sum-
mary of the analysis results.
Source of True Energies

Select the source of energies to be used in performing the Gain Evaluation. All of the
energies listed in the specified source will be used.
• The Current NID Analysis Results
• A Certificate File
• A Nuclide Library File
Current NID Analysis Results

Select the Current NID Analysis Results button to specify the Nuclide ID analysis
results of the current spectrum as the source of true energies.
Certificate File
Select the Certificate File button to specify a certificate (CTF) file as the source of
true energies.
Display Results
Select the Display Results button to open the Gain Evaluator display (Figure 34 on
page 42), showing the results of the gain evaluation.
Nuclide Library
Select the Nuclide Library button to specify a nuclide (NLB) library as the source of
true energies.
Reporting
The reporting phase contains standard routines to output analysis results and other in-
formation contained in the datasource as well as a routine for printing spectra.

Standard
The functions of the Standard reporting dialog are explained in the following para-
graphs. The Genie 2000 Report System is covered in detail in the Report Module and
Template Files chapter of the Genie 2000 Customization Tools Manual.
Template Name and Section Name

To output the analysis results, choose both a Template Name and a Section Name
within that file, as shown in Figure 66 (note that a section named <all> is available if
you want to use the entire template file).
Error Multiplier
Though uncertainty values are always calculated and stored at 1 sigma, errors can be
reported at a different sigma level by entering a specific Error Multiplier here. For in-
stance, if you’d like errors to be reported at 3 sigma, type in 3 as the Error Multiplier.
Start On
You should check one of the boxes in the “Start on” section:
• Page One means that the first page of the next report section will be numbered
as one.
• New page means that the new results will be appended to existing results and
start on a new page.
• New file means that any previous report file (spectrum file name with an
extension of .RPT) will be overwritten; if this box is not checked, the data will
be appended to the existing file.

Analyze Menu
Figure 66 The Standard Report Setup
Output To
The report is always written to a disk file (the default path is
C:\GENIE2K\REPFILES\name.RPT, where name is the name of the datasource
being reported on). In addition, the “Output to” box lets you also send the file to the
Screen or to a Printer, or to both.
Activity Units and Multiplier

Activity Units is normally μCi; if you want to use another unit for reporting nuclide
activities, enter that unit here. Since the activities are stored in microcuries, you’ll
have to enter a factor to convert microcuries to your units (if you want to use Bq, for
instance, enter 37000 here).
Print Spectrum
The Print Spectrum dialog (Figure 67) lets you set the parameters that control the way
a hard copy printout of the spectrum will appear.
VFS
Choose either Linear or Log for the vertical full scale of the graph.
Max Counts
The maximum number of counts can either be determined automatically or chosen by
the user from the drop-down list. This maximum must be determined automatically if
a second spectrum is to be overlaid (for comparison purposes).

Figure 67 The Print Spectrum Dialog
ROI
To print only a part of the spectrum, check “ROI”, then enter the region’s starting and
ending channel numbers. The starting channel must be at least 1. The maximum num-
ber of ROI channels that can be printed is 1024.
Compare to Other Datasource

To overlay your current spectrum with that of a second datasource, check “Compare to
other datasource” and either Select the datasource or type in a fully specified
datasource path for any .CNF CAM file or type in any detector name, prefixing it with
“DET:”.
For example:
C:\genie2k\camfiles\Nbsstd.cnf
or
DET:DET1
or
\\HOTLAB1\DET:Ge2
Note that since the vertical scale should be automatically determined for printed com-
parisons, “Auto” must be selected in the VFS “Max Counts” box.

Analyze Menu
Full Channel Display

The normal method of spectrum plotting compresses adjacent channels to simplify the
graph. Check the “Full channel display” box to display every channel in the range of
channels being plotted. This option is only effective for a range of more than 1024
channels.
QA Analysis
There are two QA Analysis commands provided when the Model S05 Quality Assur-
ance Software is installed on your system. One, QA Transfer, to transfer data to a se-
lected QA File and another, QA Analyze, to specify options for reporting a selected
QA File.
QA Transfer
Select an existing QA (QAF) file to save the QA Analyze data to, then click Execute
to save the current datasource’s data to the Selected QA file.
QA Analyze
QA Analyze lets you choose report generation options for the selected QA (QAF) file.
Select
The QA file from the most recent QA Transfer command will be shown in the text
box; use the Select button to choose another.
Report Selection
Choose which type of report you want to generate: a Last Measurement Report, a Full
Report or None.
Select Last Measurement to generate a Last Measurement Report for each of the pa-
rameter definitions. This analysis compares the most recent measurement to all earlier
measurements for that parameter on file.
Select Full to generate a Full Report: All of the measurements for each of the parame-
ters defined.
Select None to analyze the data, performing limit checks, for example, and store the
results in the QA file selected by the QA Transfer command (page 105) without gener-
ating a report.
Start On
• Page One means that the first page of the next report section will be numbered
as one.

• New page means that the new results will be appended to existing results and
start on a new page.
• New file means that any previous report file (spectrum file name with an
extension of .RPT) will be overwritten; if this box is not checked, the data will
be appended to the existing file.
Output To
• If the Screen checkbox is checked, the current report section is displayed on the
system’s screen.
• If the Printer checkbox is checked, the entire report is sent to the system’s
printer.
Note: A report is always saved to ?:\GENIE2K\REPFILES\name.RPT, where

name is the name of the datasource being reported on.
Save Datasource
This phase specifies the save location for an open datasource. If the phase is invoked
from the Analyze menu, the save will occur immediately after you click the Execute
button.
Note: Although analysis sequences can be executed in a command line environ-

ment using REXX or ANALYZE.EXE directly, the Save Datasource step
will only work in that environment if automatic file naming has been en-
abled in the Sequence Preferences dialog on page 112.
In an Analysis Sequence File, the phase can appear more than once as a step. The Save
Datasource window in Figure 68 will appear, once for each step, when the sequence
begins execution. This lets you specify the save parameters separately for each in-
stance of the step. The save parameters you specify for each instance will be used
when that instance is executed in the sequence.

Edit Menu
Figure 68 Save Datasource Dialog
Save as Type
The “Save as type” box lets you select the file format you’ll save as: CAM (.CNF),
Toolkit (.TKA), or IEC455 (.IEC). If you type in the file name without an extension,
the selected “Save as type” extension will automatically be appended.
To save a file with an extension other than those associated with the file filters, type
the file name and extension, surrounded by double quotes (“filename.abc”), into the
“Save as type” box.
Description
For CAM files, you can enter an optional description of up to 32 characters.
Edit Menu
The Edit Menu allows you to enter and edit Sample Information, define and edit Anal-
ysis Sequences.

Sample Info
Sample info presents you with a dialog screen (Figure 69) for entering sample infor-
mation for the current datasource. This is the same dialog you’ll see if you select the
Edit | Sample Info menu item in the spectral display application.
Figure 69 Editing Sample Information
The Text Fields

The text fields allow you to enter descriptive data for your sample. You can enter up to
64 characters in the Sample Title field and all four of the Sample Description fields.
You can enter up to 16 characters in the Sample ID, Type, and Sample Geometry
fields and up to 24 characters in the Collector Name field.
This dialog also asks for the sample Quantity, its Uncertainty and its Units, and the
user-defined percent Random Error and percent Systematic Error, all of which are
used in calculating the uncertainty for the nuclide line activity, as described in the
“Basic Calculations” section of the “Algorithms” chapter in the Genie 2000 Customiz-
ation Tools Manual.
Buildup Type
Selecting None will allow entry of the Sample Date and time; that is, the time you col-
lected the sample. The Begin Date is not available for this Type.
Selecting Deposition or Irradiation lets you enter the Begin Date and time and End
Date and time for your sample’s deposition or irradiation time.

Edit Menu
Load Cal
The Load Cal button lets you load a calibration file (.CAL) into the datasource. You
have the option of loading the source’s Energy/Shape calibration, Efficiency calibra-
tion, or both. The Info button displays a dialog box which shows descriptive informa-
tion for the currently selected file, if any is available.
More
The More button lets you define or customize a dialog which allows editing of addi-
tional sample information parameters. The content/format of this dialog screen is de-
fined via a .FDS file named AAAINFO.FDS (this must be in the directory defined by
the environment variable EXEFILES). Only CAM sample class parameters are sup-
ported by this mechanism. If the required .FDS file is not present in the required di-
rectory, the More button will not be shown on the Edit Sample Information dialog
screen.
Note: If an .FDS file is defined that contains sample parameters already present
on the main edit sample information dialog, any value entries for those du-
plicate parameters will be overridden by values entered in the main dialog
screen.
Analysis Sequence
The Analysis Sequence command allows you to create or edit analysis sequences that
you can use to automatically analyze your spectra (Figure 70).
The Editor’s window defaults to a minimum size, but can easily be dragged to a larger
size.
Figure 70 A Typical Edit Analysis Sequence Dialog

In the Algorithms and Current Steps lists, you’ll see some steps with an asterisk before
their names, such as “*Reporting – Standard”. These steps have parameters that con-
trol how the sequence’s output will be presented.
Note: An Analysis Sequence file can also be created or edited with the standalone
Analysis Sequence Editor, which is described in detail in the “Using the
Analysis Sequence Editor” chapter in the Genie 2000 Operations Manual.
Unique Parameters
Note that the steps listed in the following table have parameters that can be defined
uniquely each time they occur in a sequence.
Step Parameters
Peak Locate and Peak Area Start channel and Stop channel
File name, Save as type and Descrip-

Save Datasource
tion
All parameters other than Activity Units

Report
and Multiplier
Common Parameters
All other sequence step parameters are “common”; they cannot be specified independ-
ently. If there are multiple instances of one of these steps in a sequence, all instances
of that step will have the same parameters.
Insert Step
To add a step to the sequence, highlight a step in the Step Selection list box, then click
on the Insert Step button. The step will be added to the Current Steps list.
Delete Step
To remove a step from the sequence, highlight the step in the Current Steps list that
you want to remove, then click on the Delete Step button.

Edit Menu
Select Algorithm
To choose an algorithm for the current step, press the Select Algorithm button. For in-
stance, if you had inserted and highlighted the Peak Locate phase step, pressing the
Select Algorithm button would bring up a window similar to Figure 71, which shows
the Peak Locate phase’s algorithms. To associate one of the algorithms with the phase,
highlight the algorithm then press OK to save the association.
Figure 71 Peak Locate Algorithms
Note that the Peak Locate and Peak Area algorithms’ Start Channel and Stop Channel
parameters and all Report algorithm parameters can be specified differently each time
one of those algorithms occurs in a sequence (the Report algorithm’s “Standard” step
has an asterisk beside it to indicate this). All other algorithms, steps and parameters
cannot be specified independently. This means that each time one of those is used in a
sequence, a common set of parameters will be used.
Setup Algorithm
After you have associated an algorithm with the phase, press the Setup Algorithm
button and verify or change the algorithm’s parameters. The setup screens and parame-
ter choices for each of the analysis phases are described in detail under “Analyze
Menu”, starting on page 73.

Sequence Preferences
After you have begun editing an analysis sequence, press the Sequence Preferences
button to set a group of preferences for that sequence (Figure 72).
Figure 72 Analysis Sequence Preferences
Edit Sample Information

If the “Edit sample information” box is checked, you will be prompted to edit sample
information when the sequence begins execution. If the box is not checked, there will
be no prompt.
Note: No prompt will be issued if the analysis sequence is executed in a command

line environment using ANALYZE.EXE directly or via REXX, regardless
of this preference setting.
Prompt to Select Datasource

If you check the “Prompt to select datasource” box, you’ll be prompted to choose a
datasource when the sequence begins execution. If the box is not checked, the analysis
sequence will use the detector or file datasource that is open and active when the analysis
sequence is run.
Note: No prompt will be issued if the analysis sequence is executed in a command

line environment using ANALYZE.EXE directly or via REXX, regardless
of this preference setting.
Automatic File Naming

Check the “Automatic file naming” box to cause the system to automatically create a
new file name each time the Save Datasource step is executed. The files are saved in
the standard CAMFILES subdirectory and are named sequentially. If the box is not
checked, you will have to specify a file name when the sequence is run.

Edit Menu
The first time this function is executed, the file will be named “00000001.CNF” and the
counter will be incremented by one. When the counter reaches 108, it will reset to 1.
Note: This preference must be enabled for any sequence that includes a Save
Datasource step and that will be executed in a command line environment
using ANALYZE.EXE or REXX directly.
Efficiency Calibration
Check the “Import calibration at execution” box to indicate that an efficiency calibra-
tion should be imported at execution. If the box is not checked, the calibration in the
datasource being analyzed will be used.
Notes: No calibration selection prompt will be issued if the analysis sequence is

executed in a command line environment using ANALYZE.EXE directly
or via REXX.
When an efficiency calibration that includes the specification of a .GIS file

is imported during an analysis sequence, this specification will be overrid-
den if a .GIS file is also specified in either the Sequence Preferences set-
tings or the NID with Interference Correction algorithm settings.
Prompt
If “Prompt” is selected, you will be asked to specify the calibration when the analysis
sequence starts to run.
Specify Now
If “Specify now” is selected, you’ll choose the calibration file now instead of at execu-
tion time. The drop-down list shows the efficiency geometry identifier of each .CAL
calibration file found in the CALFILES directory.
If a calibration file does not specify an efficiency geometry identifier, the list will dis-
play the file name (truncated if necessary) enclosed in parentheses. Note that the effi-
ciency geometry identifier can be set via Calibrate | Store menu selection.
Cascade Correction
Cascade correction does not apply to the analysis of alpha spectra.

Load
Load (Figure 73) allows you to load either the steps from the last executed analysis
sequence file, shown in the File Name box, or the sequence of steps from the Current
datasource. Either of these functions will populate the Current Steps list box with the
sequence’s steps and will load their associated setup parameters.
Figure 73 Loading the Sequence
Any other sequence file can be edited with the Analysis Sequence Editor, which is de-
scribed in detail in the “Using the Analysis Sequence File Editor” chapter in the Genie
2000 Operations Manual.
Store
Store allows you to save an analysis sequence as a file on disk. These files will appear
in both the Analyze menu (page 73) and the Load screen’s sequence descriptions.
Execute
The Execute button executes the currently defined analysis sequence, which is the se-
quence of steps listed in the Current Steps list box.

Options Menu
Options Menu
The Options Menu lets you Change the Operator’s Name, perform Strip and Smooth,
and work with the Report Window.
Change Operator Name

Selecting Change Operator Name lets you to enter or edit an operator name. This
name will be stored in all currently opened datasources whenever various phases of
analysis and calibration are performed.
Interactive NID
The Interactive NID option (Figure 74) brings up a modeless dialog, allowing you to
see a graphical connection between the location of the spectrum cursor and the
nuclides in a library.
Figure 74 The Interactive NID Dialog
As you may move the cursor in the spectrum window Interactive NID will attempt to
find the closest matching line (within tolerance) in the nuclide library and select that
line in the list box. Alternatively, you may select a line in the list box and this will au-
tomatically move the spectrum cursor (if possible) to that energy.

The nuclide information for the currently selected line will also be displayed in the
Nuclide Info status page. If the cursor is within an ROI, an activity will be calculated
using the current efficiency calibration and displayed in that page.
Sort By Nuclide or Energy

The list can be sorted either by nuclide name, or by line energy. Use these radio but-
tons to toggle between the two modes.
Show Confirming Lines

If the Confirming Lines box is checked, the energies of any other lines for the selected
nuclide will be marked in the spectrum window.
Setup
The Setup button lets you change the Interactive NID preferences. This includes nu-
clide library, tolerance, and activity units.
Strip
The Strip command (Figure 75), lets you choose the Background Datasource, which is
multiplied by the constant entered in the text box, then is subtracted from the Current
Datasource, channel by channel.
The Background Datasource is chosen by clicking on one of the Datasource Type

buttons, then selecting a .CNF file using the Files list and Directories list in the center
of the dialog box.
When you have chosen the Background Datasource and entered the strip factor in the
text box at the top of the window, click on OK to start the strip process.

Options Menu
Figure 75 The Strip Dialog
Smooth
Choosing Smooth (Figure 76) lets you smooth the current datasource to decrease or
eliminate random data fluctuations. You can choose one of six weighted-average
smoothing algorithms, from 3 point to 13 point.
Figure 76 The Smooth Dialog

How Smoothing Works

As an example of how smoothing works, let’s consider 3 Point smoothing, which
weight-averages three channels at a time: the current channel and one channel to either
side. The weighted-average value is placed in the current channel, then the algorithm
moves on to the next channel, repeating the process until the entire spectrum has been
smoothed.
Datasource Overview
The three Datasource Overviews display a brief summary of the Acquisition, Analysis
and Calibration parameters stored in the current datasource.
Acquisition Data
The Acquisition Data view (Figure 77), summarizing data about the datasource acqui-
sition, shows the datasource’s name and detailed input information.
Figure 77 Acquisition Overview
Datasource Name
File datasources will be listed as Path\FileName.
MCA datasources will be listed as Detector: <MID input name>.

Options Menu
Input Information
This information describes the physical device used to acquire the datasource. The in-
formation is also available on the “Input Info” Status Page (page 71). If the data is not
present, the field will be blank.
Analysis Data
The Analysis Data view (Figure 78) summarizes data about the analysis that has been
applied to the datasource. The algorithms used for that step will also be identified. If
an Analysis Sequence has been stored in the datasource, the steps will be displayed. A
list of files that will be or have been used for an analysis step will also be displayed.
Figure 78 Analysis Overview
Analysis Sequence Description

Analysis Sequence Description data names the analysis sequence file (ASF) used to
analyze the spectrum. If no sequence file was executed, the Description will be blank.
Analysis Files
Any additional files used to perform analysis steps, such as NLB and CNF files, will
be listed here.
Note: An entry in the Analysis Files section does not necessarily mean that the
step has been performed on the datasource.

Analysis Steps
The Analysis Steps section lists the analysis steps performed on the datasource. The
list of steps is derived from an Analysis Sequence File (ASF), selections from the An-
alyze menu, or both. A grayed-out algorithm name indicates that analysis step has not
been executed.
Calibration Data
The Calibration Data view (Figure 79) displays the current energy and efficiency cali-
bration data for the foreground datasource.
Figure 79 Calibration Overview
Energy
The Energy data includes the energy, FWHM and Low Tail equations.
Efficiency
The Efficiency data includes the efficiency geometry ID, the model (type), the order of
the low energy polynomial, the order of the polynomial, and the efficiency equation.
Peak to Total
The Peak-to-Total data includes the peak to total calibration equations, the order of the
low energy peak and order of the polynomial.

Options Menu
Report Window
The Report Window menu item lets you choose among several commands: three of
these are for the window’s contents, the others control the window’s size. The window
size you choose can be saved as a permanent setting; see “Preferences” on page 63.
You can create a PDF file of the Report Window’s contents with the File | Export Re-
port to PDF command (page 5).
Copy Highlighted Contents to Clipboard

This command copies the highlighted contents of the Report Window to the system
clipboard so you can paste the data in another application, such as a word processor or
a presentation program.
Copy Contents to Clipboard

This command copies the entire contents of the Report Window to the system clip-
board so you can paste the data in another application, such as a word processor or a
presentation program.
Clear Contents
Selecting this command will remove all data from the Report Window.
Load Existing Report

This command loads a selected RPT file into the Report Window. If there is already a
report in the window, the loaded file will overwrite it. Execution of this command re-
quires that the Report Window not be minimized.
Default Size
If you have changed the size of the Report Window, either by dragging a window bor-
der or by using one of the sizing commands in this menu, this command will return the
window to its original size.
Maximize
The Maximize command will enlarge the Report Window to full screen, allowing you
to read the data more easily.
Minimize
This command removes the Report Window from the display and maximizes the spec-
tral display.

Datasource Menu
The Datasource menu doesn’t appear in the Menu Bar until at least one datasource has
been opened. It can show up to eight datasource file names. If more than eight
datasources are currently open, the “More” item will be added to the menu. Selecting
More brings up a list of all open datasources, letting you choose the one of interest (Fig-
ure 80). The maximum number of datasources which can be open at one time is 32.
When one of the datasource file names is selected, the spectral display area changes to
show the selected datasource.
Figure 80 The Datasource Menu
Next Group
Select Next Group to index to and display the next memory group. This menu item is
available only if the datasource is a multi-memory group input.
For example, if you open a Detector Input called MULTI(1:4), the spectral displays
will display the first memory group. Selecting Next Group will display memory
group 2 and the Title Bar will show MULTI(2:4), and so on.
Previous Group
The Prev Group menu item, which is available only if the datasource is a
multi-memory group input, indexes to and displays the previous memory group.

Workspace Files
For example, if you open a Detector Input called MULTI(1:4), the spectral displays
will display the first memory group. Selecting Prev Group will display memory
group 4 and the Title Bar will show MULTI(4:4), and so on.
Show All Datasources

Show All Datasources is available only if more than one datasource is open. Selecting
it will simultaneously display up to eight open datasources. The name of each
datasource will be shown in the top right corner of the datasource’s display. The ac-
quisition status of each hardware datasource will be shown in the top left corner.
You can list the next set of eight either by using F6 (next datasource) or by selecting
the Datasource | More menu item and choosing any of the open datasources.
The current datasource has a heavy border around its display and its name is displayed
in the Title Bar.
Single click on any one of the display areas to make it the current datasource. Double
click on any one of the display areas to make that datasource a full screen display.
Workspace Files
The workspace function allows you to save a specific configuration within the Alpha
Acquisition and Analysis (AAA) package. For example, if you have a four detector
system, a workspace file can be created that allows you to open all datasources (detec-
tors) at once by selecting the saved workspace file from the menu selection.
Workspace files are created when a current Acquisition and Analysis configuration is
saved to a workspace file. A workspace file normally never needs to be edited, but the
following information is provided if a workspace file needs to be created or edited out-
side Acquisition and Analysis.
Workspace files are ASCII files written in a .INI file format. These files control the
datasource(s) opened and the display options selected by the Acquisition and Analysis
windows when a workspace file is loaded. These files have a .GWS file extension for
mvcg.exe (Gamma) and a .AWS file extension for mvca.exe (Alpha).
INI files, or profile files as they are sometimes called, have a standard format: Each
file is divided into sections. Each section is marked by a name of the section in brack-
ets, i.e. [section name]. Within each section, entries are formed of two parts separated
by an equal sign. The first part is the key name or entry name. The second part is the
string for the key value, i.e. key name = string key value. The workspace file follows
this format.

[Datasource]
This section contains key information about the datasource sections to follow, the
show all display option, and the datasource that was being displayed.
OpenNames=DSn, …
This key name/value pair contains information about the names of the datasource sec-
tions to follow. The value is a comma delimited list of strings used to uniquely iden-
tify the section names for datasource information. Each string is made up of a “DS”
string and a unique number i.e. OpenNames=DS1,DS2.
ShowAll=1(On) / 0(Off)
This key name/value pair represents a on/off switch for the Show All datasource dis-
play option. A 1 represents a On value and a 0 is Off, i.e. ShowAll=0. See “Show All
Datasources” on page 123 for more detail.
CurrentDS=datasource file name or Detector name

The datasource name (CurrentDS) should contain the name of the datasource to be
opened when the workspace file is loaded. The name can be either a detector name or
a fully qualified CAM file name; i.e. CurrentDS=c:\genie2k\camfiles\naidemo.cnf.
[DataSource.DSx]
This section is used to specify information for a given datasource, including the datasource
name, the type of datasource and whether the datasource is to be opened as read-only.
There should be a section like this for each name in the OpenNames section list.
DSName=datasource file name or Detector name

The datasource name (DSName) should contain the name of the datasource to be
opened when the workspace file is loaded. The name can be either a detector name or
a fully qualified CAM file name, i.e.
DSName=C:\GENIE2K\CAMFILES\Naidemo.cnf.
DSCType= 769(Detector) / 1(NativeSpect file)

Currently there are two types of datasources, a detector or a file. If the datasource is a
detector, then type value should be 769. If the datasource is a file, then type value
should be 1.
DSReadOnly=1(On) / 0(Off)
This value is the flag to open that datasource as read only or not. A 1 means On (open
as read only) and 0 means Off (open as read/write).
[Display]
This section contains the available Acquisition and Analysis datasource display options. Each
key name corresponds to a display option that affects how the datasource data is viewed. All
the key values, except for CompareDS, are On/Off values, 1 for On and 0 for Off.

Example Alpha Spectroscopy Files
ScaleIsAuto=1(On) / 0(Off)
Set ScaleIsAuto=1 to change the display’s vertical full scale (VFS) automatically
(page 60).
Set ScaleIsAuto=0 to require that the VFS be set manually .
ScaleisLinear=1(On) / 0(Off)
Set ScaleIsLinear=1 to define the display’s scale as Linear (page 60).
Set ScaleIsLinear=0 to define the display’s scale as Log.
Expand=1(On) / 0(Off)
Set Expand=1 to change the display mode to expanded.
Set Expand=0 to restore the display mode to normal (page 58).
Compare=1(On) / 0(Off)
Set Compare=1 to turn the compare function On.
Set Compare=0 to turn the compare function Off (page 61).
CompareDS=datasource file name or Detector name

The CompareDS key value should contain the name of the datasource to be used to
compare with the other loaded datasources. The name can be either a detector name or
a fully qualified CAM file name, i.e.
CompareDS=C:\GENIE2K\CAMFILES\Naidemo.cnf.
Example Alpha Spectroscopy Files

For your convenience, installing the S509 Alpha Spectroscopy Analysis program adds
a collection of example files that you may want to refer to while you are setting up
your system for alpha spectroscopy. Examining these files can provide you with addi-
tional information on how to properly structure the sequence of events in an Analysis
Sequence File (ASF) to correctly analyze your alpha spectra.
There are eight files in your :\GENIE2K\CAMFILES directory which contain spectral
data for field samples and reagent blanks for the elements americium, plutonium, tho-
rium and uranium. The file names are:
Am1000.cnf Amblank.cnf
Pu1000.cnf Publank.cnf
Th1000.cnf Thblank.cnf
U1000.cnf Ublank.cnf
The four *1000.cnf files contain the spectral data for field samples and the four
*blank.cnf files contain the spectral data for reagent blanks prepared and counted
specifically in association with the four field samples. Examining the contents of these

eight files will show you representative spectra for these four elements and help you
select the appropriate tracer to use when quantitatively analyzing those four elements.
In the same directory you will also find four nuclide identification library files custom-
ized for analyzing the corresponding elements:
Alpha_am.nlb
Alpha_pu.nlb
Alpha_th.nlb
Alpha_u.nlb
If you examine the contents of these NLB files, you’ll better understand how custom-
izing your own nuclide library files can improve the efficiency, selectivity and speci-
ficity of library driven peak searches.
In your :\GENIE2K\CTLALPHA directory you’ll find these four Analysis Sequence

files:
Amtrac.asf
Putrac.asf
Thtrac.asf
Utrac.asf
They are specifically customized for analyzing the corresponding elements using a re-
agent blank correction and the customized Nuclide Identification Libraries.
If you examine the contents of these ASF files, you can see useful examples for struc-
turing the sequence of analysis steps for your particular sample. You should take par-
ticular note of the directory and path names attaches to the various files pointed to in
the various steps in the ASF files. If you want to model your own ASFs after the ex-
amples, you will need to be certain that each step in your analysis sequence file can
point to the correct files (background, reagent blank, nuclide identification library,
etc.) as and where they exist in your Genie 2000 installation.
You can gain additional insight into how the example Analysis Sequence Files work
by taking the time to reanalyze one or more of the supplied field samples.

Index
A Standard background subtract. . . . . . . . . 84
Acquire Area preset . . . . . . . . . . . . . . . . . . . . 75
Setup command . . . . . . . . . . . . . . . . 7 Assay date, setting . . . . . . . . . . . . . . 26, 36
Start command . . . . . . . . . . . . . . . . . 7 Asterisk in the status report . . . . . . . . . . . 17
Stop command . . . . . . . . . . . . . . . . . 7 Auto function
Acquisition Efficiency calibration . . . . . . . . . . . . . 40
Delay control . . . . . . . . . . . . . . . . . 17 Energy recalibration. . . . . . . . . . . . . . 32
Parameters, defining . . . . . . . . . . . . . . 7 Automatic
Phase . . . . . . . . . . . . . . . . . . . . . 74 Gain adjust . . . . . . . . . . . . . . . . . . 48
Action level calculations . . . . . . . . . . . . . 97 HVPS turn on . . . . . . . . . . . . . . . . . 16
Activity units report. . . . . . . . . . . . . . . 102 VFS command . . . . . . . . . . . . . . . . 60
Activity units, choosing . . . . . . . . . . . . . 36 Automatic pole/zero . . . . . . . . . . . . . . . 14
ADC
Adjustment of . . . . . . . . . . . . . . . . . 10
Conversion gain . . . . . . . . . . . . . . . . 10 B
LLD . . . . . . . . . . . . . . . . . . . . . . 10 Background
ULD . . . . . . . . . . . . . . . . . . . . . . 10 Alpha subtract algorithm . . . . . . . . . . . 83
Zero . . . . . . . . . . . . . . . . . . . . . . 11 Critical level test, alpha . . . . . . . . . . . . 84
Adding an ROI . . . . . . . . . . . . . . . . . . 62 Standard subtract algorithm . . . . . . . . . . 84
Adjust Baseline restorer control . . . . . . . . . . . . . 14
ADC. . . . . . . . . . . . . . . . . . . . . . 10 Battery power modes . . . . . . . . . . . . . . . 16
Amplifier . . . . . . . . . . . . . . . . . . . 13 BLR control . . . . . . . . . . . . . . . . . . . 14
Programmable controls . . . . . . . . . . . . . 9 Buildup type, sample info. . . . . . . . . . . . 107
Stabilizer . . . . . . . . . . . . . . . . . . . 11
Advance sample changer . . . . . . . . . . . . . 18
Alpha background, critical level . . . . . . . . . 84 C
Alpha spec. files, example . . . . . . . . . . . 124 Calibration
Amplifier Efficiency . . . . . . . . . . . . . . . . . . . 39
Adjustment . . . . . . . . . . . . . . . . . . 13 Energy full . . . . . . . . . . . . . . . . . . 29
Coarse gain . . . . . . . . . . . . . . . . . . 14 Energy, cursor method . . . . . . . . . . . . 30
Fine gain . . . . . . . . . . . . . . . . . . . 14 Energy, full . . . . . . . . . . . . . . . . . . 23
Pole/zero . . . . . . . . . . . . . . . . . . . 14 Energy, marker method . . . . . . . . . . . . 30
PUR control . . . . . . . . . . . . . . . . . . 14 Load . . . . . . . . . . . . . . . . . . . . . 108
Shaping control . . . . . . . . . . . . . . . . 14 Preferences . . . . . . . . . . . . . . . . . . 20
Super-fine gain . . . . . . . . . . . . . . . . 14 Settings . . . . . . . . . . . . . . . . . . . . 20
Analysis sequence CAM file, opening a . . . . . . . . . . . . . . . . 1
Defining a . . . . . . . . . . . . . . . . . . 108 Certificate file
Deleting a step . . . . . . . . . . . . . . . . 109 Full . . . . . . . . . . . . . . . . . . . . 25, 35
Execute . . . . . . . . . . . . . . . . . 73, 113 Partial . . . . . . . . . . . . . . . . . . . 25, 35
Inserting a step . . . . . . . . . . . . . . . . 109 Certificate, save as . . . . . . . . . . . . . . 25, 35
Loading . . . . . . . . . . . . . . . . . . . 113 Chemical recovery . . . . . . . . . . . . . . . . 98
Select an algorithm . . . . . . . . . . . . . 110 Clear
Sequence preferences . . . . . . . . . . . . 111 HVPS latches . . . . . . . . . . . . . . . . . 16
Set up an algorithm . . . . . . . . . . . . . 110 Closing a datasource. . . . . . . . . . . . . . . . 3
Storing . . . . . . . . . . . . . . . . . . . . 113 Coarse gain, amplifier . . . . . . . . . . . . . . 14
Area correction Coefficients, energy . . . . . . . . . . . . . . . 22
Alpha background subtract . . . . . . . . . . 83 Compare
Critical level test . . . . . . . . . . . . . . . 85 Command . . . . . . . . . . . . . . . . . . . 60

Moving the spectrum . . . . . . . . . . . . . 61 Display update rate . . . . . . . . . . . . . . . . 67
Off command . . . . . . . . . . . . . . . . . 62 Drop peak function . . . . . . . . . . . . . . . . 32
VFS command . . . . . . . . . . . . . . . . 62
Compare another datasource . . . . . . . . . . 103
Computational preset . . . . . . . . . . . . . 9, 75 E
Context menu Edit
gain evaluator . . . . . . . . . . . . . . . . . 43 Sample information . . . . . . . . . . . . . 107
Continuum Edit colors . . . . . . . . . . . . . . . . . . . . 64
Peak area channels . . . . . . . . . . . . . . 81 Efficiency calibration . . . . . . . . . . . . . . 39
Peak area function. . . . . . . . . . . . . . . 81 Auto function . . . . . . . . . . . . . . . . . 40
Selecting the type of . . . . . . . . . . . . . 20 Data sets, total used . . . . . . . . . . . . . . 39
Control panel Efficiency correction . . . . . . . . . . . . . . . 87
Expand off . . . . . . . . . . . . . . . . . . 59 Energy
Expand on button . . . . . . . . . . . . . . . 59 Calibrate, cursor method . . . . . . . . . . . 30
Control panel mode . . . . . . . . . . . . . . . 68 Calibrate, marker method . . . . . . . . . . . 30
Control recovery algorithm . . . . . . . . . . . 98 Coefficients calibration . . . . . . . . . . . . 22
Conversion gain, ADC . . . . . . . . . . . . . . 10 Drop peak function . . . . . . . . . . . . . . 32
Counts preset . . . . . . . . . . . . . . . . . . . 75 Energy only calibration . . . . . . . . . . . . 21
Critical level test Full calibration . . . . . . . . . . . . . . 23, 29
Alpha background subtraction . . . . . . . . 84 Order of the polynomial. . . . . . . . . . . . 33
Area correction . . . . . . . . . . . . . . . . 85 Recalculate . . . . . . . . . . . . . . . . . . 31
Peak area . . . . . . . . . . . . . . . . . . . 81 Recalibration, auto function. . . . . . . . . . 32
Reagent correction . . . . . . . . . . . . . . 87 Tolerance units . . . . . . . . . . . . . . . . 20
Units selection . . . . . . . . . . . . . . . . 20
Energy units
D Preferences . . . . . . . . . . . . . . . . . . 66
Data plot to file . . . . . . . . . . . . . . . . . . 5 Enhanced data plot to file . . . . . . . . . . . . . 5
Data plot to PDF . . . . . . . . . . . . . . . . . . 6 Error multiplier in analysis reporting . . . . . . 101
Data plotting . . . . . . . . . . . . . . . . . . . . 4 Example alpha spec. files . . . . . . . . . . . . 124
Datasource Execute analysis sequence . . . . . . . . . . . . 73
Closing a . . . . . . . . . . . . . . . . . . . . 3 Expand
Comparing two . . . . . . . . . . . . . . . 103 Command . . . . . . . . . . . . . . . . . . . 58
Menu . . . . . . . . . . . . . . . . . . . . . 121 Off command . . . . . . . . . . . . . . . . . 59
Opening a. . . . . . . . . . . . . . . . . . . . 1 Export data plot to PDF . . . . . . . . . . . . . . 6
Saving a . . . . . . . . . . . . . . . . . . . . 3 External Start/Stop. . . . . . . . . . . . . . . . . 8
Show all . . . . . . . . . . . . . . . . . . . 122
Type of . . . . . . . . . . . . . . . . . . . . . 2
Using more than one . . . . . . . . . . . . . . 1 F
Datasource overview File info . . . . . . . . . . . . . . . . . . . . . . 4
Acquisition information . . . . . . . . . . . 117 Fine gain, amplifier. . . . . . . . . . . . . . . . 14
Analysis information . . . . . . . . . . . . 118 Fit singlets, peak area . . . . . . . . . . . . . . 82
Delay Fixed parameters, peak area . . . . . . . . . . . 82
Acquisition . . . . . . . . . . . . . . . . . . 17 Full certificate file . . . . . . . . . . . . . . 25, 35
Standby . . . . . . . . . . . . . . . . . . . . 17 Full channel plot display . . . . . . . . . . . . 104
Deleting Full energy calibration . . . . . . . . . . . . 23, 29
A sequence step . . . . . . . . . . . . . . . 109
An ROI . . . . . . . . . . . . . . . . . . . . 62
Detection limits G
Currie MDA and KTA MDA . . . . . . . . . 94 Gain
Display Centroid control . . . . . . . . . . . . . . . . 12
All plot channels . . . . . . . . . . . . . . . 104 Mode, stabilizer . . . . . . . . . . . . . . . . 13
Preferences . . . . . . . . . . . . . . . . . . 63 Spacing, stabilizer. . . . . . . . . . . . . . . 13
Selecting the scale. . . . . . . . . . . . . . . 60 Window, stabilizer . . . . . . . . . . . . . . 12
Display menu. . . . . . . . . . . . . . . . . . . 58 Gain evaluator . . . . . . . . . . . . . . . . . . 42

analysis phase . . . . . . . . . . . . . . . . . 99 MDA confidence factor . . . . . . . . . . . . . 93
See Also context menu Modes, power manager . . . . . . . . . . . . . 16
Gain Evaluator Moving
data plot . . . . . . . . . . . . . . . . . . . . 45 The compare spectrum . . . . . . . . . . . . 61
Group The rubber rectangle . . . . . . . . . . . . . 59
Next . . . . . . . . . . . . . . . . . . . . . 121
Previous . . . . . . . . . . . . . . . . . . . 121
N
Next group . . . . . . . . . . . . . . . . . . . 121
H Nuclide identification
High voltage Interference correction method . . . . . . . . 92
Automatic turn on . . . . . . . . . . . . . . . 16 MDA confidence factor . . . . . . . . . . . . 93
Clear latches. . . . . . . . . . . . . . . . . . 16 Standard method . . . . . . . . . . . . . . . 90
HVPS output control . . . . . . . . . . . . . 15 Tentative method . . . . . . . . . . . . . . . 89
ICB latch reset . . . . . . . . . . . . . . . . 16
Inspector reset . . . . . . . . . . . . . . . . . 16
Status . . . . . . . . . . . . . . . . . . . . . 16 O
Voltage control . . . . . . . . . . . . . . . . 15 Opening a datasource . . . . . . . . . . . . . . . 1
HVPS Operator name . . . . . . . . . . . . . . . . . 114
See High voltage Order of the polynomial . . . . . . . . . . . . . 33
Overrange, clearing . . . . . . . . . . . . . . . 13
I
Info button . . . . . . . . . . . . . . . . . . . . . 3 P
Integral preset . . . . . . . . . . . . . . . . . 9, 75 Partial certificate file . . . . . . . . . . . . . 25, 35
Interactive NID Peak area
Option . . . . . . . . . . . . . . . . . . . . 114 Region. . . . . . . . . . . . . . . . . . . . . 81
Sum/non-linear LSQ method . . . . . . . . . 80
Peak labels . . . . . . . . . . . . . . . . . . . . 64
L Peak locate
Labels Simple library method . . . . . . . . . . . . 78
peak . . . . . . . . . . . . . . . . . . . . . . 64 Unidentified second difference . . . . . . . . 76
spectrum. . . . . . . . . . . . . . . . . . . . 67 User specified method . . . . . . . . . . . . 77
Library peak locate, simple . . . . . . . . . . . 78 Phase
Linear Acquisition . . . . . . . . . . . . . . . . . . 74
Continuum . . . . . . . . . . . . . . . . . . 20 Area correction . . . . . . . . . . . . . . . . 83
Vertical full scale . . . . . . . . . . . . . . . 60 Detection Limits . . . . . . . . . . . . . . . 94
LLD control, ADC . . . . . . . . . . . . . . . . 10 Efficiency correction . . . . . . . . . . . . . 87
Load Gain evaluator. . . . . . . . . . . . . . . . . 99
Calibration . . . . . . . . . . . . . . . . . . 108 Nuclide identification . . . . . . . . . . . . . 89
Command . . . . . . . . . . . . . . . . . . . 18 Peak area . . . . . . . . . . . . . . . . . . . 80
ROIs. . . . . . . . . . . . . . . . . . . . . . 63 Peak locate . . . . . . . . . . . . . . . . . . 76
Log scale command . . . . . . . . . . . . . . . 60 Post NID processing . . . . . . . . . . . . . 96
Low tail Reporting . . . . . . . . . . . . . . . . . . 100
Curve values . . . . . . . . . . . . . . . . . 28 Plot command . . . . . . . . . . . . . . . . . . . 4
Selection of . . . . . . . . . . . . . . . . . . 20 Plotting all channels. . . . . . . . . . . . . . . 104
Pole/zero, automatic . . . . . . . . . . . . . . . 14
Polynomial order, energy full . . . . . . . . . . 33
M Populate, energy recal . . . . . . . . . . . . . . 31
Manual scale command . . . . . . . . . . . . . 60 Post NID processing command . . . . . . . . . 96
Marker info status page . . . . . . . . . . . . . 70 Power manager
MCA menu . . . . . . . . . . . . . . . . . . . . 7 Acquisition delay . . . . . . . . . . . . . . . 17
MCA-only menus . . . . . . . . . . . . . . . . 67 Modes . . . . . . . . . . . . . . . . . . . . . 16
MCS preset . . . . . . . . . . . . . . . . . . . . 75 Standby delay . . . . . . . . . . . . . . . . . 17

Power mode control . . . . . . . . . . . . . . . 16 Section name in analysis reports . . . . . . . . 101
Preferences Selecting an analysis algorithm . . . . . . . . . 110
Calibration . . . . . . . . . . . . . . . . . . 20 Setting
Display . . . . . . . . . . . . . . . . . . . . 63 The assay date. . . . . . . . . . . . . . . 26, 36
Preset The high voltage . . . . . . . . . . . . . . . 15
Area . . . . . . . . . . . . . . . . . . . . . . 75 Up an analysis algorithm . . . . . . . . . . 110
Computational . . . . . . . . . . . . . . . 9, 75 Settings, calibration . . . . . . . . . . . . . . . 20
Counts . . . . . . . . . . . . . . . . . . . . . 75 Shaping control, amplifier . . . . . . . . . . . . 14
Integral . . . . . . . . . . . . . . . . . . . 9, 75 Show
MCS. . . . . . . . . . . . . . . . . . . . . . 75 All datasources. . . . . . . . . . . . . . . . 122
Sweep counts . . . . . . . . . . . . . . . . . 75 Efficiency calibration . . . . . . . . . . . . . 40
Time. . . . . . . . . . . . . . . . . . . . . . 75 Energy coefficients . . . . . . . . . . . . . . 23
Previous group . . . . . . . . . . . . . . . . . 121 Energy full . . . . . . . . . . . . . . . . . . 32
Print spectrum command . . . . . . . . . . . . 102 Smooth
PUR control . . . . . . . . . . . . . . . . . . . 14 Function . . . . . . . . . . . . . . . . . . . 116
How it works. . . . . . . . . . . . . . . . . 117
Spectrum labels . . . . . . . . . . . . . . . . . 67
R Spectrum, plotting a . . . . . . . . . . . . . . . . 4
Reagent correction Stabilizer
Critical level test . . . . . . . . . . . . . . . 87 Adjustment of . . . . . . . . . . . . . . . . . 11
Menu command . . . . . . . . . . . . . . . . 86 Gain centroid . . . . . . . . . . . . . . . . . 12
Recalculate, energy. . . . . . . . . . . . . . . . 31 Mode controls . . . . . . . . . . . . . . . . . 13
Ref peak function . . . . . . . . . . . . . . . . 30 Overrange condition . . . . . . . . . . . . . 13
Reject zero area peaks . . . . . . . . . . . . . . 82 Spacing controls. . . . . . . . . . . . . . . . 13
Report to PDF . . . . . . . . . . . . . . . . . . . 5 Window controls . . . . . . . . . . . . . . . 12
Report window options . . . . . . . . . . . . . 120 Zero centroid . . . . . . . . . . . . . . . . . 12
Reporting activity units . . . . . . . . . . . . . 102 Standby delay . . . . . . . . . . . . . . . . . . 17
Reporting phase . . . . . . . . . . . . . . . . . 100 Start/Stop, external . . . . . . . . . . . . . . . . 8
Resetting the HVPS . . . . . . . . . . . . . . . 16 Starting data acquisition . . . . . . . . . . . . . . 7
Resizing the rubber rectangle . . . . . . . . . . 60 Status
ROI limits, peak area . . . . . . . . . . . . . . . 82 HVPS control . . . . . . . . . . . . . . . . . 16
ROIs Report . . . . . . . . . . . . . . . . . . . . . 17
Adding . . . . . . . . . . . . . . . . . . . . 62 Status page
Automatically adding . . . . . . . . . . . . . 62 Marker info . . . . . . . . . . . . . . . . . . 70
Deleting . . . . . . . . . . . . . . . . . . . . 62 Status report
Loading . . . . . . . . . . . . . . . . . . . . 63 Asterisk in. . . . . . . . . . . . . . . . . . . 17
Storing . . . . . . . . . . . . . . . . . . . . 63 Clearing an error . . . . . . . . . . . . . . . 18
Rubber rectangle Updating . . . . . . . . . . . . . . . . . . . 18
Moving the . . . . . . . . . . . . . . . . . . 59 Step continuum . . . . . . . . . . . . . . . . . . 20
Resizing . . . . . . . . . . . . . . . . . . . . 60 Stopping data acquisition . . . . . . . . . . . . . 7
Store ROIs . . . . . . . . . . . . . . . . . . . . 63
Strip function . . . . . . . . . . . . . . . . . . 115
S Super-fine gain . . . . . . . . . . . . . . . . . . 14
Sample changer, advancing the . . . . . . . . . 18
Sample info
Buildup type . . . . . . . . . . . . . . . . . 107 T
Editing . . . . . . . . . . . . . . . . . . . . 107 Tail curve, selection of . . . . . . . . . . . . . . 20
Text fields . . . . . . . . . . . . . . . . . . 107 Template name in analysis reports . . . . . . . 101
Save as certificate . . . . . . . . . . . . . . 25, 35 Time preset . . . . . . . . . . . . . . . . . . . . 75
Saving a datasource . . . . . . . . . . . . . . . . 3 Tolerance values, use of . . . . . . . . . . . . . 20
Scale Toolbar setup, Preferences . . . . . . . . . . . . 68
Display . . . . . . . . . . . . . . . . . . . . 60 TRP preamp setup . . . . . . . . . . . . . . . . 15
Menu . . . . . . . . . . . . . . . . . . . . . 60 Type of datasource . . . . . . . . . . . . . . . . 2
Screen update rate . . . . . . . . . . . . . . . . 67

U W
ULD control, ADC . . . . . . . . . . . . . . . . 10 Workspace file format . . . . . . . . . . . . . 122
Unidentified second difference peak locate . . . 76
User specified peak locate . . . . . . . . . . . . 77
Z
Zero
V ADC control. . . . . . . . . . . . . . . . . . 11
VFS Centroid control . . . . . . . . . . . . . . . . 12
Auto . . . . . . . . . . . . . . . . . . . . . . 60 Mode control . . . . . . . . . . . . . . . . . 13
Linear . . . . . . . . . . . . . . . . . . . . . 60 Spacing control . . . . . . . . . . . . . . . . 13
Log . . . . . . . . . . . . . . . . . . . . . . 60 Window control . . . . . . . . . . . . . . . . 12
Manual . . . . . . . . . . . . . . . . . . . . 60

Notes
132
Warranty
Canberra (we, us, our) warrants to the customer (you, your) that for a period of ninety (90) days from the date of
shipment, software provided by us in connection with equipment manufactured by us shall operate in accordance
with applicable specifications when used with equipment manufactured by us and that the media on which the
software is provided shall be free from defects. We also warrant that (A) equipment manufactured by us shall be
free from defects in materials and workmanship for a period of one (1) year from the date of shipment of such
equipment, and (B) services performed by us in connection with such equipment, such as site supervision and
installation services relating to the equipment, shall be free from defects for a period of one (1) year from the date of
performance of such services.
If defects in materials or workmanship are discovered within the applicable warranty period as set forth above, we
shall, at our option and cost, (A) in the case of defective software or equipment, either repair or replace the
software or equipment, or (B) in the case of defective services, reperform such services.
LIMITATIONS
EXCEPT AS SET FORTH HEREIN, NO OTHER WARRANTIES OR REMEDIES, WHETHER STATUTORY,
WRITTEN, ORAL, EXPRESSED, IMPLIED (INCLUDING WITHOUT LIMITATION, THE WARRANTIES OF
MERCHANTABILITY OR FITNESS FOR A PARTICULAR PURPOSE) OR OTHERWISE, SHALL APPLY. IN NO
EVENT SHALL CANBERRA HAVE ANY LIABILITY FOR ANY SPECIAL, EXEMPLARY, PUNITIVE, INDIRECT
OR CONSEQUENTIAL LOSSES OR DAMAGES OF ANY NATURE WHATSOEVER, WHETHER AS A RESULT
OF BREACH OF CONTRACT, TORT LIABILITY (INCLUDING NEGLIGENCE), STRICT LIABILITY OR
OTHERWISE. REPAIR OR REPLACEMENT OF THE SOFTWARE OR EQUIPMENT DURING THE
APPLICABLE WARRANTY PERIOD AT CANBERRA'S COST, OR, IN THE CASE OF DEFECTIVE SERVICES,
REPERFORMANCE AT CANBERRA'S COST, IS YOUR SOLE AND EXCLUSIVE REMEDY UNDER THIS
WARRANTY.
EXCLUSIONS
Our warranty does not cover damage to equipment which has been altered or modified without our written
permission or damage which has been caused by abuse, misuse, accident, neglect or unusual physical or
electrical stress, as determined by our Service Personnel.
We are under no obligation to provide warranty service if adjustment or repair is required because of damage
caused by other than ordinary use or if the equipment is serviced or repaired, or if an attempt is made to service or
repair the equipment, by other than our Service Personnel without our prior approval.
Our warranty does not cover detector damage due to neutrons or heavy charged particles. Failure of beryllium,
carbon composite, or polymer windows, or of windowless detectors caused by physical or chemical damage from
the environment is not covered by warranty.
We are not responsible for damage sustained in transit. You should examine shipments upon receipt for evidence
of damage caused in transit. If damage is found, notify us and the carrier immediately. Keep all packages,
materials and documents, including the freight bill, invoice and packing list.
Software License
When purchasing our software, you have purchased a license to use the software, not the software itself. Because
title to the software remains with us, you may not sell, distribute or otherwise transfer the software. This license
allows you to use the software on only one computer at a time. You must get our written permission for any
exception to this limited license.
BACKUP COPIES
Our software is protected by United States Copyright Law and by International Copyright Treaties. You have our
express permission to make one archival copy of the software for backup protection. You may not copy our
software or any part of it for any other purpose.
Revised 1 Apr 03

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Model S509

The material in this document, including all information, pictures,

Canberra expressly grants the purchaser of this product the right

No material in this document may be copied by any third party, or

Canberra Industries, 800 Research Parkway, Meriden, CT 06450

The information in this document describes the product as

Printed in the United States of America.

For technical assistance, call our Customer Service Hotline at

Genie is a trademark of Canberra Industries, Inc.

Alpha Acquisition and Analysis . . . . . . . . . . . . . . . . . . . . 1

ii Model S509 Alpha Analysis Option

User's Manual - ICN 9230875L iii

iv Model S509 Alpha Analysis Option

User's Manual - ICN 9230875L v

vi Model S509 Alpha Analysis Option

Figure 1 The Open Datasource Dialog

User's Manual - ICN 9230875L 1

The supported types are:

2 Model S509 Alpha Analysis Option

The Info Button

Figure 2 The Save As Dialog

The file types supported by this operation are:

CAM files (.CNF)

User's Manual - ICN 9230875L 3

Customizing Your Plot

Figure 3 The Data Plot Dialog

1. Solid black spectrum line; ROIs filled with hatching.

4 Model S509 Alpha Analysis Option

Save Enhanced Data Plot to File

Print Report Window

Export Report to PDF

User's Manual - ICN 9230875L 5

Export Data Plot to PDF

Or, in Windows Explorer, you can navigate to C:\Genie2k\CAMfiles and click on an

Figure 4 The Open Workspace Dialog

6 Model S509 Alpha Analysis Option

User's Manual - ICN 9230875L 7

Figure 5 PHA Acquire Setup

8 Model S509 Alpha Analysis Option

Integral, Area and Counts

User's Manual - ICN 9230875L 9

Figure 6 Typical ADC Adjust Dialog

10 Model S509 Alpha Analysis Option

Figure 7 Typical Stabilizer Adjust Dialog

Figure 8 shows the relationship between several of the Stabilizer’s functions.

User's Manual - ICN 9230875L 11

Figure 8 Relationship Between Stabilizer Functions

Gain and Zero Window Controls

12 Model S509 Alpha Analysis Option

Gain and Zero Spacing Controls

Gain and Zero Mode Controls

Figure 9 Typical Amplifier Adjust Dialog

User's Manual - ICN 9230875L 13

Fine Gain and S-fine Gain

The pole/zero adjustment will be more accurate if the spectrum contains a

14 Model S509 Alpha Analysis Option

Figure 10 Typical High Voltage Adjust Dialog

User's Manual - ICN 9230875L 15

Clear Ov/In Latches

Figure 11 Typical Power Manager Adjust Dialog