PM 569 Spatial Statistics: Course Description

PM
569 Spatial Statistics

Units: 3
Term: Fall 2017
Time: Friday 10am-1pm
Location: USC HSC, Soto Building Room 117
Instructor: Dr. Meredith Franklin
Office: SSB 202A
Office Hours: By Appointment
Contact Info: meredith.franklin@usc.edu
323-442-2703 (office)

Course Description
Spatial statistics is a sub-discipline of statistics that includes the analysis of data that are observed
on a 2 or 3-dimensional surface. Spatial data arise in almost every field of study--examples include
meteorological measurements from weather stations, demographics from the census, and
incidence of disease over a particular geographic area.
This course is intended as an introduction to spatial statistics and aims to provide students with
the background necessary to investigate geographically represented data. There are numerous
research questions involving spatial data, but in this course focus will be placed on methods that
are relevant in the fields of public health, environmental science, and social science. Lectures will
cover the three main areas of spatial statistics: geostatistical data, lattice (areal) data, and point
patterns.

Learning Objectives
The learning objectives of this course are that upon completion, the student should be able to:

• Distinguish different types of spatial data (geostatistical, areal, point process) and
understand how spatial autocorrelation plays a role in statistical modeling.
• Use methods introduced in lectures to investigate spatial autocorrelation in example
datasets provided as exercises.
• Determine which spatial methods to use to in their own research and implement them
using statistical software and geographic information systems.
• Read and discuss new methods in the spatial statistics literature based on an
understanding of the basic spatial statistics approaches, principles and main assumptions.

Prerequisite(s): PM511A or equivalent
Recommended Preparation: Courses in regression, knowledge of R programming language

Course Notes
Lecture notes presented in class will be posted on Blackboard.

Technological Proficiency and Hardware/Software Required
The course will involve a great deal of computing, primarily in the statistical language R. Students
without the computing prerequisite may be allowed to take the course but should be aware that they
will need to become familiar with R on their own. Download R at http://www.r-project.org/
There will not be a separate computer lab time for going through examples, but some lecture time will
be set aside to go through code and procedures to familiarize students with the implementation of
various spatial methods using statistical software (R). We will also introduce ArcGIS. Student licenses are
available through the USC Spatial Sciences Institute (https://software.usc.edu/geospatial-software-esri/)

Required Readings and Supplementary Materials
Lecture notes and handouts will be the primary source of information for this course. Several textbooks
on spatial data analysis will prove to be useful, but lectures will be primarily based on material
presented in the following (Note these are NOT REQUIRED):

1) Roger S. Bivand, Edzer J. Pebesma and Virgilio Gómez-Rubio Applied Spatial Data Analysis with
R, 2nd edition (2013), Springer.
2) Lance A. Waller and Carol A. Gotway Applied Spatial Statistics for Public Health Data (2004),
John Wiley & Sons.
3) S. Banerjee, B. Carlin, and A. Gelfand. Bayesian and Hierarchical Modeling of Spatial Data, 2nd
edition (2014), Chapman and Hall. (Advanced)

Description and Assessment of Assignments
Assignments: There will be 6 assignments given throughout the semester. Students may discuss the
problems with one another, however, individual solutions must be submitted and copying will not be
tolerated. Late assignments will be penalized by 20% for each day past the due date.

Project: The final project will be done individually. A proposal must be submitted one month before the
project is due. The project must consist of statistical analysis of a real dataset and a written report in the
form of a scientific paper that summarizes the project. The report must have an abstract, introduction,
methods, results and discussion.
The project topic is up to the student but should draw from his or her own research. It may also involve
data from the census, surveys, simulations or a paper on spatial statistics from the literature.

Grading Breakdown

Assignment Points % of Grade
Weekly Reading Assignment and Discussion 5 5
Homework Assignments (6 @ 10% each) 60 60
Final Project 35 35
• Proposal
• Report
• Presentation
TOTAL 100 100

Assignment Submission Policy
Assignments will be due on Fridays as per the schedule below and will be uploaded to the course
Blackboard. Late homework assignments and projects will not be accepted.
Syllabus PM 569, Page 2 of 5

Tentative Course Schedule: A Weekly Breakdown
Topics/Daily Activities Deliverable/ Due Dates

Week 1 Introduction, review of non-spatial statistics,
August 25 overview of different types of spatial data
Week 2 Geostatistics: variograms and covariance functions
September 1
Week 3 Geostatistics: fitting variogram functions, kriging
September 8
Week 4 Geostatistics: kriging and spatial regression HW 1 Due
September 15
Week 5 Geostatistics: spatial smoothing techniques
September 22
Week 6 ArcGIS and Google Maps API for geocoding HW2 Due
September 29
Week 7 Areal data: neighborhoods, testing for spatial
October 6 association
Week 8 Areal data: global and local tests of association HW3 Due
October 13
Week 9 Areal data: CAR and SAR models, inference
October 20
Week 10 Areal data: disease mapping HW4 Due; Final Project
October 27 Proposal Due
Week 11 Point process data: types of spatial patterns, spatial
November 3 randomness
Week 12 Point process data: spatial clustering and testing for HW5 Due
November 10 clustering
Week 13 Point process data: models and methods in spatial
November 17 Epidemiology
Week 14 Thanksgiving, no class
November 24
Week 15 Special topics: Spatio-temporal modeling HW6 Due
December 1
Finals Week Final Project Presentations Final Paper, Presentation Slides
December 8th Due


Statement on Academic Conduct and Support Systems

Academic Conduct
Plagiarism – presenting someone else’s ideas as your own, either verbatim or recast in your own
words – is a serious academic offense with serious consequences. Please familiarize yourself
with the discussion of plagiarism in SCampus in Section 11, Behavior Violating University
Standardshttps://scampus.usc.edu/1100-behavior-violating-university-standards-and-
appropriate-sanctions/. Other forms of academic dishonesty are equally unacceptable. See
additional information in SCampus and university policies on scientific misconduct,
http://policy.usc.edu/scientific-misconduct/.

Discrimination, sexual assault, and harassment are not tolerated by the university. You are
encouraged to report any incidents to the Office of Equity and Diversity http://equity.usc.edu/
or to the Department of Public Safety http://capsnet.usc.edu/department/department-public-
safety/online-forms/contact-us. This is important for the safety whole USC
community. Another member of the university community – such as a friend, classmate,
advisor, or faculty member – can help initiate the report, or can initiate the report on behalf of
another person. The Center for Women and Men http://www.usc.edu/student-affairs/cwm/
provides 24/7 confidential support, and the sexual assault resource center webpage
sarc@usc.edu describes reporting options and other resources.

Support Systems
A number of USC’s schools provide support for students who need help with scholarly
writing. Check with your advisor or program staff to find out more. Students whose primary
language is not English should check with the American Language Institute
http://dornsife.usc.edu/ali, which sponsors courses and workshops specifically for international
graduate students. The Office of Disability Services and Programs
http://sait.usc.edu/academicsupport/centerprograms/dsp/home_index.htmlprovides
certification for students with disabilities and helps arrange the relevant accommodations. If an
officially declared emergency makes travel to campus infeasible, USC Emergency Information
http://emergency.usc.edu/will provide safety and other updates, including ways in which
instruction will be continued by means of Blackboard, teleconferencing, and other technology.


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569 Spatial Statistics

Syllabus PM 569, Page 2 of 5

Topics/Daily Activities Deliverable/ Due Dates

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