Name: ___Marques Alsopp______________ Date: _____3/24/21__________

Student Exploration: RNA and Protein Synthesis

Vocabulary: amino acid, anticodon, codon, gene, messenger RNA, nucleotide, ribosome, RNA,
RNA polymerase, transcription, transfer RNA, translation

Prior Knowledge Questions (Do these BEFORE using the Gizmo.)

1. Suppose you want to design and build a house. How would you communicate your design
plans with the construction crew that would work on the house?

____I would talk to them or give them the blueprint

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2. Cells build large, complicated molecules, such as proteins. What do you

think cells use as their “design plans” for proteins?

_____I think cells use DNA as there design plans

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Gizmo Warm-up
Just as a construction crew uses blueprints to build a house, a
cell uses DNA as plans for building proteins. In addition to DNA,
another nucleic acid, called RNA, is involved in making proteins.
In the RNA and Protein Synthesis Gizmo, you will use both DNA
and RNA to construct a protein out of amino acids.

1. DNA is composed of the bases adenine (A), cytosine (C),

guanine (G), and thymine (T). RNA is composed of adenine,
cytosine, guanine, and uracil (U).

Look at the SIMULATION pane. Is the displayed segment a

part of a DNA or RNA molecule? How do you know?

the Segment is part of a DNA because it has repeating pairs

of thymine and adenine and cytosine and guanine

2. RNA polymerase is a type of enzyme. Enzymes help chemical reactions occur quickly.
Click the Release enzyme button, and describe what happens.

__The reaction occurs quickly

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 Activity A: Get the Gizmo ready:
Transcription  If necessary, click Release enzyme.

Introduction: The first stage of building a protein involves a process known as transcription.
In transcription, a segment of DNA serves as a template to produce a complementary strand of
RNA. This complementary strand is called messenger RNA, or mRNA.

Question: What occurs during transcription?

1. Experiment: Like DNA, RNA follows base-pairing rules. Experiment to find which RNA
nucleotide on the right side of the Gizmo will successfully pair with the thymine at the top of
the template strand of DNA. (NOTE: The DNA on the right side is the template strand.)

Which RNA base bonded with the thymine? Adenine_

2. Experiment: The next three bases on the DNA template strand are adenine, cytosine, and
guanine. Use the Gizmo to answer the following questions:

A. Which RNA base bonds with adenine? _______Uracil______________________

B. Which RNA base bonds with cytosine? _______Guanine_____________________

C. Which RNA base bonds with guanine? ________Cytosine____________________

3. Observe: In molecules of RNA, uracil takes the place of the DNA base ___Thymine_____.

4. Build: Continue building the strand of mRNA until you have used all of the RNA nucleotides.
What is the nucleotide sequence of the mRNA strand you built?

___A U G C U G A C C U A G
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5. Apply: Suppose a template strand of DNA had the following sequence:

T A C G G A T A A C T A C C G G G T A T T C A A

What would be the complementary strand of mRNA?

AUG CCU AUU GAU GGC CCA UAA GUU

6. Predict: How would a change to the sequence of nucleotides in a DNA segment affect the

mRNA transcribed from the DNA? __Any Change would be reflected in the mRNA molecule.

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 Activity B: Get the Gizmo ready:
Translation  Once the mRNA strand has been built, click Continue.

Introduction: After a strand of mRNA has been built, the strand exits the cell’s nucleus. The
second stage of protein synthesis, called translation, occurs next. During translation, the strand
of mRNA is used to build a chain of amino acids.

Question: What occurs during translation?

1. Observe: Examine the strand of mRNA on

the SIMULATION pane. Every group of
three bases of mRNA is called a codon.

In the table at right, list the nitrogen bases

in each codon. (Hint: Start from the top of
the strand and read down.) The first mRNA
codon is called the universal start codon.

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 Codon mRNA bases
1 AUG
2 CUG
3 ACC
4 UAG

2. Predict: Translation starts when a ribosome (the purple structure on the SIMULATION
pane) binds to a strand of mRNA. Transfer RNA, or tRNA, begins bringing amino acids into
the ribosome. Each tRNA molecule carries only one kind of amino acid. This amino acid is
determined by the tRNA’s anticodon, a set of three unpaired bases.

Which anticodon do you think would attach to the mRNA’s start codon? ____UAC_______

Use the Gizmo to check your answer.

3. Observe: Place the next two tRNA molecules on the mRNA strand. What happens?

While a tRNA molecule detaches from mRNA and exits the ribosome, neighboring amino
acids attach to one another.
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As each tRNA molecule binds to the mRNA, the ribosome joins the amino acid carried by
the tRNA to the growing amino acid chain.

4. Describe: UAG (as well as UAA and UGA) is an example of a stop codon. Molecules called
release factors bind to stop codons. Place the release factor on the mRNA molecule.

What happens?
The release factor and the final tRNA molecule exit the ribosome as the amino acid chain is
released from the tRNA.

Click Continue. Your protein is now complete. Most actual proteins consist of sequences of
hundreds of amino acids.

(Activity B continued on next page)

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Activity B (continued from previous page)

5. Infer: Why do you think stop and start codon signals are necessary for protein synthesis?

There would be no way to start or stop the translation process without start and stop Codon
signals.
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6. Summarize: Describe the processes of transcription and translation in your own words,
based on what you have observed in the Gizmo.

Transcription: When the enzyme RNA polymerase separates the DNA molecule into two
strands, transcription begins. The DNA template is joined to an mRNA molecule by
complementary mRNA nucleotides. The mRNA molecule is similar to DNA, except that
uracil replaces thymine in the DNA molecule. After that, the completed mRNA strand
separates from the DNA molecule.
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Translation: The ribosome receives the mRNA molecule. The ribosome aligns with the first
mRNA codon, known as the start codon (AUG). The start codon is accompanied by a tRNA
molecule (UAC). An amino acid is attached to the tRNA molecule. The second mRNA codon
receives a second tRNA molecule and its associated amino acid. A bond is formed between
the two amino acids. As tRNA molecules attach to the mRNA codons, more amino acids are
added to the molecule until the strand is
complete._______________________________________________________________

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 Extension:
Get the Gizmo ready:
Genes and
 You will not need to use the Gizmo for this activity.
traits

Introduction: Inside a ribosome, amino acids are linked together to form a protein molecule. As
the chain of amino acids grows, it folds and coils to form a three-dimensional shape. The
complex shape that results determines the properties of the protein. Proteins have a wide
variety of structures and perform many essential functions in living things.

A sequence of DNA that codes for a specific protein is called a gene. By coding for proteins,
genes determine an organism’s inherited traits.

Question: How do genes code for specific proteins and traits?

1. Translate: Each codon codes for one of 20 amino acids. This code is universal among all
living things. For example, the mRNA codon GGU codes for the amino acid glycine in every
living thing, from a bacteria to an elephant.

Examine the codon chart below. The amino acid coded for by a specific mRNA codon can
be determined by finding the first base of the codon along the left side of the table, the
second base along the top of the table, and the third base along the right side of the table.

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What amino acids do the following codons code for?

AUG: _Methionine (start)__ CUG: _Leucine__ ACC: _Theronine___ UAG: ___Stop_____

(Extension continued on next page)

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Extension (continued from previous page)

2. Apply: Suppose you wanted a protein that consists of the amino acid sequence methionine,
asparagine, valine, and histidine. Give an mRNA sequence that would code for this protein.

AUG AAU GUU CAU

3. Summarize: How do genes determine the traits of an organism? Explain in detail.

On a DNA strand, a gene is made up of a series of nucleotides. On the DNA sequence, an

mRNA strand is established during transcription. The mRNA strand then travels to the
ribosome, where it is translated into a protein based on the codon sequence in the mRNA.
The shape and function of a protein molecule are determined by the amino acid sequence.
Organisms' characteristics are determined by the shape and function of protein
molecules.________________________________________________________________
_________

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4. Extend your thinking: Sometimes errors occur during transcription or translation. Examine
the codon chart on the previous page. Notice that each amino acid is coded for by several
different codons. For example, alanine is coded for by GCU, GCC, GCA, and GCG.

How might this offset transcription or translation errors? No change in the amino acid coding
for, and therefore no change in the protein, would result from sight changes to a codon. This
reduces the chances of a defective protein forming as a result of a transcription or translation
error.
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5. Think and discuss: Consider the two following statements:

 The theory of evolution states that all living things had a single common ancestor.
 The translation between mRNA and amino acids is the same for all living things. (For
example, the mRNA codon CAG codes for glutamine in all living things.)

Does the second statement support the theory of evolution? Explain why or why not. If
possible, discuss your answer with your teacher and classmates.

If different groups of living things were unrelated to one another, transcription would most
likely function differently. The fact that all living beings have the same transcription is strong
evidence that they are all related and may have descended from a single ancestor.

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