Biochemistry Chapter11 2012
Biochemistry Chapter11 2012
Biochemistry Chapter11 2012
and Transport
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1
Functions of Membranes
Define the boundaries of the cell
Allow import and export
Selective import of nutrients (e.g. lactose)
Selective export of waste and toxins (e.g. antibiotics)
Retain metabolites and ions within the cell
Sense external signals and transmit information into the cell
Provide compartmentalization within the cell
separate energy-producing reactions from energy-consuming
ones
keep proteolytic enzymes away from important cellular
proteins
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FIGURE 11-1
TABLE 11-1
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FIGURE 11-2
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FIGURE 11-3
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(3) Vesicle (Lyposome):
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FIGURE 11-4
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Common Features of Membranes
Sheet-like flexible structure, 30-100 Å (3-10 nm) thick
Main structure is composed of two leaflets of lipids (bilayer)
Except of archaebacteria: monolayer of bifunctional lipids
Form spontaneously in aqueous solution and are stabilized by
non-covalent forces, esp. hydrophobic effect
Protein molecules span the lipid bilayer
Asymmetric
Some lipids are found preferably “inside”
Some lipids are found preferably “outside”
Carbohydrate moieties are always outside the cell
Electrically polarized (inside negative ~ -60mV)
Fluid structures: 2-dimensional solution of oriented lipids
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Functions of Proteins in Membranes
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Peripheral membrane proteins are easily
solubilized
Peripheral membrane proteins: can be relieved
by mild conditions, e.g. change pH or ionic
strength, add urea. If covalently linked to
membrane lipid, use phosphilipase C to cleave the
linkage
Integral membrane proteins: use detergent.
FIGURE 11-6
9
extracellular
domain
Transmembrane
domain
intracellular
domain
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FIGURE 11-8 are held in the membrane by
Integral Proteins
hydrophobic interactions with lipidsIntegral membrane
proteins
FIGURE 11–8 Integral membrane
proteins. Integral proteins can be
classified into 6 categories:
Type I and II: one transmembrane helix.
Type III: multi-transmembrane helices
in a single polypeptide chain
Type IV: transmembrane domains from
different polypeptides assemble to form
a channel
Type V: held to the bilayer through
covalently linked lipids
Type VI:contain both transmembrane
helices and GPI-anchor
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seven transmembrane
domains
(each ~ 20 a.a., make an a-
helix that spans the bilayer-
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11
phosphoglycerol
(PG) filled in the
central cavity
a shell of
phospholipids
12
To predict the secondary structure of a
transmembrane protein
13
A further remarkable feature of many
transmembrane proteins of known structure is the
presence of Tyr and Trp residues at the interface
between lipid and water (Fig. 11–12).
Not all integral membrane proteins are composed of
transmembrane helices. Another structural motif
common in bacterial membrane proteins is the β
barrel, in which 20 or more transmembrane segments
form sheets that line a cylinder (Fig. 11–13).
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FIGURE 11-12
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β Barrel Integral Membrane Proteins
FIGURE 11-13
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Covalently Attached lipids anchor some perpheral
membrane proteins
(1) Some membrane proteins contain one or more covalently
linked lipids including long chain fatty acids, isoprenoids,
GPI (acted as hydrophobic anchor into membrane)
Inner phase of plasma membrane:
(a) Fatty acid 接在 Cys (Ser) side chain上 S (O)上
e.g. palmitoyl group is attached to a Cys residue by
thioester linkage
(b) an N-myristoyl group is generally attached to an
amino-terminal Gly
(c) the farnesyl and geranylgeranyl groups attached to
carboxyl-terminal Cys residues are isoprenoids of 15
and 20 carbons, respectively.
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Glycosyl phosphatidylinositol (GPI)
anchors : phosphatidylinositol in which the
inositol bears a short oligosaccharide
covalently joined to the carboxyl-terminal
residue of a protein through
phosphoethanolamine.
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In this liquid-disordered state, or fluid state (Fig. 11–
15b), the interior of the bilayer is more fluid than solid
and the bilayer is like a sea of constantly moving lipid.
At intermediate (physiological) temperatures, the
lipids exist in a liquid-ordered state.
Transbilayer Movement of Lipids Requires Catalysis
At physiological temperatures, diffusion of a lipid
molecule from one leaflet of the bilayer to the other
(Fig. 11–16a) occurs very slowly if at all in most
membranes.
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FIGURE 11-15
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Several families of proteins, including the flippases,
floppases, and scramblases.
Flippases catalyze translocation of the
aminophospholipids phosphatidylethanolamine and
phosphatidylserine from the extracellular to the cytosolic
leaflet of the plasma membrane.
Floppases move plasma membrane phospholipids from
the cytosolic to the extracellular leaflet.
Scramblases are proteins that move any membrane
phospholipid across the bilayer down its concentration
gradient.
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FIGURE 11-16
FIGURE 11–16
Motion of single
phospholipids in a
bilayer.
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FIGURE 11-18 Hop diffusion of individual lipid molecules. The
motion of a single fluorescently labeled lipid molecule in a cell surface is recorded on video
by fluorescence microscopy, with a time resolution of 25 µs (equivalent to 40,000 frames/s).
The track shown here represents a molecule followed for 56 ms (2,250 frames); the trace
begins in the purple area and continues through blue, green, and orange. The pattern of
movement indicates rapid diffusion within a confined region (about 250 nm in diameter,
shown by a single color), with occasional hops into an adjoining region. This finding
suggests that the lipids are corralled by molecular fences that they occasionally jump
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FIGURE 11-19 Restricted motion of the erythrocyte chloride-bicarbonate
exchanger and glycophorin. The proteins span the membrane and are tethered to
spectrin, a cytoskeletal protein, by another protein, ankyrin, limiting their lateral mobility.
Ankyrin is anchored in the membrane by a covalently bound palmitoyl side chain (see
Figure 11-14). Spectrin, a long, filamentous protein, is cross-linked at junctional
complexes containing actin. A network of cross-linked spectrin molecules attached to the
cytoplasmic face of the plasma membrane stabilizes the membrane, making it resistant to
deformation. This network of anchored membrane proteins may form the "corral"
suggested by the experiment shown in Figure 11-18; the lipid tracks shown here are
confined to regions defined by the tethered membrane proteins.
Membrane Rafts
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FIGURE 11-20a Membrane microdomains (rafts). (a) Stable
associations of sphingolipids and cholesterol in the outer leaflet produce a
microdomain, slightly thicker than other membrane regions, that is enriched with
specific types of membrane proteins. GPI-linked proteins are common in the outer
leaflet of these rafts, and proteins with one or several covalently attached long-
chain acyl groups are common in the inner leaflet. Caveolin is especially common
in inwardly curved rafts called caveolae (see Figure 11-21).
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FIGURE 11-21 Caveolin forces inward
curvature of a membrane. Caveolae are
small invaginations in the plasma
membrane, as seen in (a) an electron
micrograph of an adipocyte surface-
labeled with an electron-dense marker. (b)
Each caveolin monomer has a central
hydrophobic domain and three long-chain
acyl groups (red), which hold the molecule
to the inside of the plasma membrane.
When several caveolin dimers are
concentrated in a small region (a raft), they
force a curvature in the lipid bilayer,
forming a caveola. Cholesterol molecules in
the bilayer are shown in orange.
Membrane Fusion
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FIGURE 11-22
FIGURE 11–22
Membrane fusion. The
fusion of two membranes
is central to a variety of
cellular processes
involving organelles and
the plasma membrane.
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Neurotransmitter Release
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11.3 Solute Transport across Membranes
FIGURE 11-25
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Passive Transport Is Facilitated by Membrane Proteins
When two aqueous compartments containing unequal
concentrations of a soluble compound or ion are separated
by a permeable divider (membrane), the solute moves by
simple diffusion from the region of higher concentration,
through the membrane, to the region of lower
concentration, until the two compartments have equal
solute concentrations (Fig. 11–26a).
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Electrochemical gradient
Chemical gradient Electrical gradient
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Passive Transport Is Facilitated by Membrane Proteins
The direction of a charged solute tends to move across a
membrane depends on:
(1) chemical gradient (the difference in solute concentration)
(2) electrical gradient across the membrane (called
electrochemical gradient or electrochemical potential)
Membrane proteins lower the activation energy for transport of
polar compounds and ions by providing an alternative path
through the bilayer for specific solutes. Proteins that bring
about this facilitated diffusion, or passive transport, are not
enzymes in the usual sense
Membrane proteins that speed the movement of a solute across
a membrane by facilitating diffusion are called transporters or
permeases.
FIGURE 11-27
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Transporters Can Be Grouped into Superfamilies Based
on
Their Structures
Transporters fall within two very broad categories:
carriers and channels (Fig. 11–28). Carriers bind their
substrates with high stereospecificity, catalyze transport
at rates well below the limits of free diffusion, and are
saturable in the same sense as are enzymes.
Channels generally allow transmembrane movement at
rates orders of magnitude greater than those typical of
carriers, rates approaching the limit of unhindered
diffusion.
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FIGURE 11-28
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Proposed structure of
GLUT1
Hydrophilic
surface
multimeric
Hydrophobic structure
surface
31
Analogous to Michaelis-Menten Equation:
V [S] 1 = Kt 1 + 1
V0 = Kmax+[ S ]
out
V0 Vmax [ S ] Vmax
t out
k2 + k−1
(Kt = k1
; whenk 2 << k−1
k
K t = k−1 = dissociationconst )
1
V [S]
V0 = Kmax+[ S ]
out
For Glu T1, t out
Kt = 1.5mM for D-Glucose
Kt = 20 – 30 mM for D-Mannose & D-Galactose
Kt = 1.5mM for L-Glucose
GluT1: (1) high rates for diffusion down a conc. gradient
(2) specificity (3) saturability
[Blood sugar]= 4.5 to 5mM, about 3x Kt, therefore V0~Vmax
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The Chloride-Bicarbonate Exchanger Catalyzes Electroneutral
Cotransport of Anions across the Plasma Membrane
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1 FIGURE 11-32 2
HCO3- then
transferred to lung
FIGURE 11–32
Chloride-
4 3 bicarbonate
exchanger of the
erythrocyte
membrane. p.395
FIGURE 11–33
34
Active Transport Results in Solute Movement against a
Concentration or Electrochemical Gradient
In primary active transport, solute accumulation is
coupled directly to an exergonic chemical reaction, such
as conversion of ATP to ADP + Pi (Fig. 11–34).
Secondary active transport occurs when endergonic
(uphill) transport of one solute is coupled to the exergonic
(downhill) flow of a different solute that was originally
pumped uphill by primary active transport.
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FIGURE 11–34
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Active Transport Results in Solute Movement against a
Concentration or Electrochemical Gradient
36
There are at least four general types of transport ATPase
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ATP-drive Ca2+ pumps (P-type ATPase) maintain
a low conc. of calcium in the cytosol
Calcium ions are pumped out of the cytosol by plasma
membrane Ca2+ pump (a P-type ATPase) to maintain low
conc. of calcium in the cytosol
Calcium ions are pumped in to the lumen by endoplasmic
reticulum and sacoplasmic reticulum Ca2+ pump
(SERCA).
SERCA conatins a single polypeptide (Mr ~ 100,000) and
cycles among conformations (see Fig. 11-36).
Two calcium ions bind to a transmembrane domain.
Phosphorylation on Asp351 mediates conformational
change and controls calcium release/binding.
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FIGURE 11–36
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(1)ATP + EnzI ADP + P-EnzII
FIGURE
(2)P-EnzII + H11–37
2O EnzI + Pi
Net:
ATP+ H2O ADP +Pi
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FIGURE 11–39
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ABC Transporters Use ATP to Drive the Active
Transport of a Wide Variety of Substrates
ABC transporters (Fig. 11–41) constitute a large family
of ATP-dependent transporters that pump amino acids,
peptides, proteins, metal ions, various lipids, bile salts,
and many hydrophobic compounds.
One ABC transporter in humans, the multi-drug
transporter (MDR1), is responsible for the striking
resistance of certain tumors to some generally effective
antitumor drugs.
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FIGURE 11–41
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TABLE 11-4
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Ion Gradients Provide the Energy for Secondary
Active Transport
例子一: The lactose transporter (lactose permease)
of E. coli is the well-studied prototype for proton-
driven cotransporters.
例子二: Na+-glucose symporters in the apical
plasma membrane take up glucose from the
intestine in a process driven by the downhill flow
of Na+:
2Naout+ + glucoseout → 2Nain+ + glucosein
FIGURE 11–42
FIGURE 11–42 Lactose uptake in E. coli. (a) The primary transport of H+ out of
the cell, driven by the oxidation of a variety of fuels, establishes both a proton
gradient and an electrical potential (inside negative) across the membrane.
Secondary active transport of lactose into the cell involves symport of H+ and
lactose by the lactose transporter. The uptake of lactose against its concentration
gradient is entirely dependent on this inflow of protons driven by the
electrochemical gradient. p.402
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FIGURE 11–44
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Ion-Selective Channels Allow Rapid Movement of Ions
across
Membranes
Ion-selective channels Ion channels, together with ion
+ +
pumps such as the Na K ATPase, determine a plasma
membrane’s permeability to specific ions and regulate the
cytosolic concentration of ions and the membrane
potential.
In ligand-gated channels binding of an extracellular or
intracellular small molecule forces an allosteric transition
in the protein.
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