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2020 – today
- 2024
[j94]Nurit Haspel
, Hyunbum Jang, Ruth Nussinov:
Allosteric Activation of RhoA Complexed with p115-RhoGEF Deciphered by Conformational Dynamics. J. Chem. Inf. Model. 64(3): 862-873 (2024)- [j93]Liang Xu, Hyunbum Jang, Ruth Nussinov:
Capturing Autoinhibited PDK1 Reveals the Linker's Regulatory Role, Informing Innovative Inhibitor Design. J. Chem. Inf. Model. 64(19): 7709-7724 (2024) - 2022
- [j92]Damla Ovek, Ameer Taweel, Zeynep Abali, Ece Tezsezen, Yunus Emre Koroglu, Chung-Jung Tsai, Ruth Nussinov, Ozlem Keskin, Attila Gürsoy:
SARS-CoV-2 Interactome 3D: A Web interface for 3D visualization and analysis of SARS-CoV-2-human mimicry and interactions. Bioinform. 38(5): 1455-1457 (2022) - [j91]Hansaim Lim, Chung-Jung Tsai, Ozlem Keskin, Ruth Nussinov, Attila Gürsoy:
HMI-PRED 2.0: a biologist-oriented web application for prediction of host-microbe protein-protein interaction by interface mimicry. Bioinform. 38(21): 4962-4965 (2022) - [j90]Hao Zhang, Duan Ni, Jigang Fan, Minyu Li, Jian Zhang, Chen Hua, Ruth Nussinov, Shaoyong Lu:
Markov State Models and Molecular Dynamics Simulations Reveal the Conformational Transition of the Intrinsically Disordered Hypervariable Region of K-Ras4B to the Ordered Conformation. J. Chem. Inf. Model. 62(17): 4222-4231 (2022) - [j89]Xiangxiang Zeng, Hongxin Xiang, Linhui Yu, Jianmin Wang, Kenli Li, Ruth Nussinov, Feixiong Cheng:
Accurate prediction of molecular properties and drug targets using a self-supervised image representation learning framework. Nat. Mac. Intell. 4(11): 1004-1016 (2022) - [i3]Xiaoqin Pan, Xuan Lin, Dongsheng Cao, Xiangxiang Zeng, Philip S. Yu, Lifang He, Ruth Nussinov, Feixiong Cheng:
Deep learning for drug repurposing: methods, databases, and applications. CoRR abs/2202.05145 (2022) - 2021
- [j88]Chuang Liu, Zhen Han, Zi-Ke Zhang, Ruth Nussinov, Feixiong Cheng:
A network-based deep learning methodology for stratification of tumor mutations. Bioinform. 37(1): 82-88 (2021) - [j87]Tian Cai, Hansaim Lim, Kyra Alyssa Abbu, Yue Qiu, Ruth Nussinov, Lei Xie:
MSA-Regularized Protein Sequence Transformer toward Predicting Genome-Wide Chemical-Protein Interactions: Application to GPCRome Deorphanization. J. Chem. Inf. Model. 61(4): 1570-1582 (2021) - [c19]Kazi Lutful Kabir, Ruth Nussinov, Buyong Ma, Amarda Shehu:
Antigen Binding Reshapes Antibody Energy Landscape and Conformation Dynamics. BIBM 2021: 2519-2526 - 2020
- [j86]Xiangxiang Zeng, Siyi Zhu, Yuan Hou, Pengyue Zhang, Lang Li, Jing Li, L. Frank Huang, Stephen J. Lewis, Ruth Nussinov, Feixiong Cheng:
Network-based prediction of drug-target interactions using an arbitrary-order proximity embedded deep forest. Bioinform. 36(9): 2805-2812 (2020) - [j85]Chuang Liu, Junfei Zhao, Weiqiang Lu, Yao Dai, Jennifer Hockings, Yadi Zhou, Ruth Nussinov, Charis Eng, Feixiong Cheng:
Individualized genetic network analysis reveals new therapeutic vulnerabilities in 6, 700 cancer genomes. PLoS Comput. Biol. 16(2) (2020)
2010 – 2019
- 2019
- [j84]Xiangxiang Zeng, Siyi Zhu, Xiangrong Liu, Yadi Zhou, Ruth Nussinov, Feixiong Cheng:
deepDR: a network-based deep learning approach to in silico drug repositioning. Bioinform. 35(24): 5191-5198 (2019) - [j83]He Peng, Xiangxiang Zeng, Yadi Zhou, Defu Zhang, Ruth Nussinov, Feixiong Cheng:
A component overlapping attribute clustering (COAC) algorithm for single-cell RNA sequencing data analysis and potential pathobiological implications. PLoS Comput. Biol. 15(2) (2019) - [j82]Ruth Nussinov, Hyunbum Jang, Chung-Jung Tsai, Feixiong Cheng:
Review: Precision medicine and driver mutations: Computational methods, functional assays and conformational principles for interpreting cancer drivers. PLoS Comput. Biol. 15(3) (2019) - [j81]Ruth Nussinov, Hyunbum Jang, Chung-Jung Tsai, Feixiong Cheng:
Correction: Review: Precision medicine and driver mutations: Computational methods, functional assays and conformational principles for interpreting cancer drivers. PLoS Comput. Biol. 15(6) (2019) - [j80]Ruth Nussinov, Chung-Jung Tsai, Hyunbum Jang:
Protein ensembles link genotype to phenotype. PLoS Comput. Biol. 15(6) (2019) - 2017
- [j79]Ruth Nussinov, Jason A. Papin, Ilya A. Vakser:
Computing the Dynamic Supramolecular Structural Proteome. PLoS Comput. Biol. 13(1) (2017) - [j78]Ruth Nussinov, Jason A. Papin:
How can computation advance microbiome research? PLoS Comput. Biol. 13(9) (2017) - [j77]Emine Guven-Maiorov, Chung-Jung Tsai, Ruth Nussinov:
Structural host-microbiota interaction networks. PLoS Comput. Biol. 13(10) (2017) - [j76]Trey Ideker, Ruth Nussinov:
Network approaches and applications in biology. PLoS Comput. Biol. 13(10) (2017) - 2016
- [j75]Tatiana Maximova, Ryan Moffatt, Buyong Ma, Ruth Nussinov, Amarda Shehu:
Principles and Overview of Sampling Methods for Modeling Macromolecular Structure and Dynamics. PLoS Comput. Biol. 12(4) (2016) - [j74]Jin Liu, Ruth Nussinov:
Allostery: An Overview of Its History, Concepts, Methods, and Applications. PLoS Comput. Biol. 12(6) (2016) - [j73]Ruth Nussinov, Jason A. Papin:
Computing Biology. PLoS Comput. Biol. 12(7) (2016) - [j72]Rachel Karchin, Ruth Nussinov:
Genome Landscapes of Disease: Strategies to Predict the Phenotypic Consequences of Human Germline and Somatic Variation. PLoS Comput. Biol. 12(8) (2016) - 2015
- [j71]Ping Zhou, Ning Zhang, Ruth Nussinov, Buyong Ma:
Defining the Domain Arrangement of the Mammalian Target of Rapamycin Complex Component Rictor Protein. J. Comput. Biol. 22(9): 876-886 (2015) - [j70]Liang Xu, Shengsheng Shan, Yonggang Chen, Xiaojuan Wang, Ruth Nussinov, Buyong Ma:
Coupling of Zinc-Binding and Secondary Structure in Nonfibrillar Aβ40 Peptide Oligomerization. J. Chem. Inf. Model. 55(6): 1218-1230 (2015) - [j69]Ruth Nussinov:
Advancements and Challenges in Computational Biology. PLoS Comput. Biol. 11(1) (2015) - [j68]Thomas Lengauer, Ruth Nussinov:
How to Write a Presubmission Inquiry. PLoS Comput. Biol. 11(2) (2015) - [j67]Ruth Nussinov, Sebastian Bonhoeffer, Jason A. Papin, Olaf Sporns:
From "What Is?" to "What Isn't?" Computational Biology. PLoS Comput. Biol. 11(7) (2015) - [j66]Rudy Clausen, Buyong Ma, Ruth Nussinov, Amarda Shehu:
Mapping the Conformation Space of Wildtype and Mutant H-Ras with a Memetic, Cellular, and Multiscale Evolutionary Algorithm. PLoS Comput. Biol. 11(9) (2015) - [j65]Amarda Shehu, Ruth Nussinov:
Computational Methods for Exploration and Analysis of Macromolecular Structure and Dynamics. PLoS Comput. Biol. 11(10) (2015) - 2014
- [j64]Alper Baspinar, Engin Cukuroglu, Ruth Nussinov, Ozlem Keskin, Attila Gürsoy:
PRISM: a web server and repository for prediction of protein-protein interactions and modeling their 3D complexes. Nucleic Acids Res. 42(Webserver-Issue): 285-289 (2014) - [j63]Ruth Nussinov:
The Significance of the 2013 Nobel Prize in Chemistry and the Challenges Ahead. PLoS Comput. Biol. 10(1) (2014) - [j62]Saliha Ece Acuner Ozbabacan, Attila Gürsoy, Ruth Nussinov, Ozlem Keskin:
The Structural Pathway of Interleukin 1 (IL-1) Initiated Signaling Reveals Mechanisms of Oncogenic Mutations and SNPs in Inflammation and Cancer. PLoS Comput. Biol. 10(2) (2014) - [j61]Chung-Jung Tsai, Ruth Nussinov:
A Unified View of "How Allostery Works". PLoS Comput. Biol. 10(2) (2014) - [j60]Qiang Cui, Ruth Nussinov:
Making Biomolecular Simulations Accessible in the Post-Nobel Prize Era. PLoS Comput. Biol. 10(8) (2014) - [j59]Shaoyong Lu, Wenkang Huang, Qi Wang, Qiancheng Shen, Shuai Li, Ruth Nussinov, Jian Zhang:
The Structural Basis of ATP as an Allosteric Modulator. PLoS Comput. Biol. 10(9) (2014) - [i2]Mine Edes, Can C. Özturan, Türkan Haliloglu, Augustin Luna, Ruth Nussinov:
MIMTool: A Tool for Drawing Molecular Interaction Maps. CoRR abs/1407.2073 (2014) - 2013
- [j58]David Zanuy, Francisco J. Sayago, Guillem Revilla-López, Gema Ballano, Lilach Agemy, Venkata Ramana Kotamraju, Ana I. Jiménez, Carlos Cativiela, Ruth Nussinov, April M. Sawvel, Galen Stucky, Erkki Ruoslahti, Carlos Alemán:
Engineering strategy to improve peptide analogs: from structure-based computational design to tumor homing. J. Comput. Aided Mol. Des. 27(1): 31-43 (2013) - [j57]Thomas Lengauer, Ruth Nussinov:
New Methods Section in PLOS Computational Biology. PLoS Comput. Biol. 9(3) (2013) - [j56]Ruth Nussinov:
How Can PLOS Computational Biology Help the Biological Sciences? PLoS Comput. Biol. 9(10) (2013) - 2012
- [j55]Billur Engin, Ozlem Keskin, Ruth Nussinov, Attila Gürsoy:
A Strategy Based on Protein-Protein Interface Motifs May Help in Identifying Drug Off-Targets. J. Chem. Inf. Model. 52(8): 2273-2286 (2012) - [j54]Rosemary Dickin, Chris James Hall, Laura K. Taylor, Andrew M. Collings, Ruth Nussinov, Philip E. Bourne:
A Review of 2011 for PLoS Computational Biology. PLoS Comput. Biol. 8(1) (2012) - [j53]Elif Nihal Korkmaz, Ruth Nussinov, Türkan Haliloglu:
Conformational Control of the Binding of the Transactivation Domain of the MLL Protein and c-Myb to the KIX Domain of CREB. PLoS Comput. Biol. 8(3) (2012) - [j52]Ruth Nussinov:
A Future Vision for PLOS Computational Biology. PLoS Comput. Biol. 8(10) (2012) - [i1]Peter Csermely, Tamás Korcsmáros, Huba J. M. Kiss, Gabor London, Ruth Nussinov:
Structure and dynamics of molecular networks: A novel paradigm of drug discovery. A comprehensive review. CoRR abs/1210.0330 (2012) - 2011
- [j51]Ilona Kifer, Ruth Nussinov, Haim J. Wolfson:
GOSSIP: a method for fast and accurate global alignment of protein structures. Bioinform. 27(7): 925-932 (2011) - [j50]Augustin Luna, Evrim I. Karac, Margot Sunshine, Lucas Chang, Ruth Nussinov, Mirit I. Aladjem, Kurt W. Kohn:
A Formal MIM Specification and Tools for the Common Exchange of MIM Diagrams: an XML-Based Format, an API, and a Validation Method. BMC Bioinform. 12: 167 (2011) - [j49]David Curcó, David Zanuy, Ruth Nussinov, Carlos Alemán:
A simulation strategy for the atomistic modeling of flexible molecules covalently tethered to rigid surfaces: Application to peptides. J. Comput. Chem. 32(4): 607-619 (2011) - [j48]Rosemary Dickin, Cecy Marden, Andrew M. Collings, Ruth Nussinov, Philip E. Bourne:
A Review of 2010 for PLoS Computational Biology. PLoS Comput. Biol. 7(1) (2011) - [j47]Yongping Pan, Ruth Nussinov:
The Role of Response Elements Organization in Transcription Factor Selectivity: The IFN-β Enhanceosome Example. PLoS Comput. Biol. 7(6) (2011) - 2010
- [j46]Guillem Revilla-López, Ana I. Jiménez, Carlos Cativiela, Ruth Nussinov, Carlos Alemán, David Zanuy:
Conformational Profile of a Proline-Arginine Hybrid. J. Chem. Inf. Model. 50(10): 1781-1789 (2010) - [j45]Shandar Ahmad, Ozlem Keskin, Kenji Mizuguchi, Akinori Sarai, Ruth Nussinov:
CCRXP: exploring clusters of conserved residues in protein structures. Nucleic Acids Res. 38(Web-Server-Issue): 398-401 (2010) - [j44]Efrat Mashiach, Ruth Nussinov, Haim J. Wolfson:
FiberDock: a web server for flexible induced-fit backbone refinement in molecular docking. Nucleic Acids Res. 38(Web-Server-Issue): 457-461 (2010) - [j43]Yongping Pan, Ruth Nussinov:
Lysine120 Interactions with p53 Response Elements can Allosterically Direct p53 Organization. PLoS Comput. Biol. 6(8) (2010) - [j42]Melda Tozluoglu, Ezgi Karaca, Ruth Nussinov, Türkan Haliloglu:
A Mechanistic View of the Role of E3 in Sumoylation. PLoS Comput. Biol. 6(8) (2010)
2000 – 2009
- 2009
- [j41]Nurcan Tuncbag, Gozde Kar, Ozlem Keskin, Attila Gürsoy, Ruth Nussinov:
A survey of available tools and web servers for analysis of protein-protein interactions and interfaces. Briefings Bioinform. 10(3): 217-232 (2009) - [j40]David Zanuy, Gema Ballano, Ana I. Jiménez, Jordi Casanovas, Nurit Haspel, Carlos Cativiela, David Curcó, Ruth Nussinov, Carlos Alemán:
Protein Segments with Conformationally Restricted Amino Acids Can Control Supramolecular Organization at the Nanoscale. J. Chem. Inf. Model. 49(7): 1623-1629 (2009) - [j39]Oranit Dror, Dina Schneidman-Duhovny, Yuval Inbar, Ruth Nussinov, Haim J. Wolfson:
Novel Approach for Efficient Pharmacophore-Based Virtual Screening: Method and Applications. J. Chem. Inf. Model. 49(10): 2333-2343 (2009) - [j38]Alexandra Shulman-Peleg, Ruth Nussinov, Haim J. Wolfson:
RsiteDB: a database of protein binding pockets that interact with RNA nucleotide bases. Nucleic Acids Res. 37(Database-Issue): 369-373 (2009) - [j37]Yongping Pan, Ruth Nussinov:
Cooperativity Dominates the Genomic Organization of p53-Response Elements: A Mechanistic View. PLoS Comput. Biol. 5(7) (2009) - [j36]Jin Liu, Ruth Nussinov:
The Mechanism of Ubiquitination in the Cullin-RING E3 Ligase Machinery: Conformational Control of Substrate Orientation. PLoS Comput. Biol. 5(10) (2009) - 2008
- [j35]Oranit Dror, Dina Schneidman-Duhovny, Alexandra Shulman-Peleg, Ruth Nussinov, Haim J. Wolfson, Roded Sharan:
Structural similarity of genetically interacting proteins. BMC Syst. Biol. 2: 69 (2008) - [j34]Dina Schneidman-Duhovny, Oranit Dror, Yuval Inbar, Ruth Nussinov, Haim J. Wolfson:
Deterministic Pharmacophore Detection via Multiple Flexible Alignment of Drug-Like Molecules. J. Comput. Biol. 15(7): 737-754 (2008) - [j33]Francisco Rodríguez-Ropero, David Zanuy, Jordi Casanovas, Ruth Nussinov, Carlos Alemán:
Application of 1-Aminocyclohexane Carboxylic Acid to Protein Nanostructure Computer Design. J. Chem. Inf. Model. 48(2): 333-343 (2008) - [j32]Eitan Yaffe, Dan Fishelovitch, Haim J. Wolfson, Dan Halperin, Ruth Nussinov:
MolAxis: a server for identification of channels in macromolecules. Nucleic Acids Res. 36(Web-Server-Issue): 210-215 (2008) - [j31]Dina Schneidman-Duhovny, Oranit Dror, Yuval Inbar, Ruth Nussinov, Haim J. Wolfson:
PharmaGist: a webserver for ligand-based pharmacophore detection. Nucleic Acids Res. 36(Web-Server-Issue): 223-228 (2008) - [j30]Efrat Mashiach, Dina Schneidman-Duhovny, Nelly Andrusier, Ruth Nussinov, Haim J. Wolfson:
FireDock: a web server for fast interaction refinement in molecular docking. Nucleic Acids Res. 36(Web-Server-Issue): 229-232 (2008) - [j29]Alexandra Shulman-Peleg, Maxim Shatsky, Ruth Nussinov, Haim J. Wolfson:
MultiBind and MAPPIS: webservers for multiple alignment of protein 3D-binding sites and their interactions. Nucleic Acids Res. 36(Web-Server-Issue): 260-264 (2008) - [c18]Ruth Nussinov, Tao Ju, Talapady Bhat, Jack Snoeyink, Karthik Ramani:
Bio-geometry: challenges, approaches, and future opportunities in proteomics and drug discovery. Symposium on Solid and Physical Modeling 2008: 417-418 - [p1]Ozlem Keskin, Attila Gürsoy, Ruth Nussinov:
Principles of Protein Recognition and Properties of Protein-protein Interfaces. Protein-protein Interactions and Networks 2008: 53-65 - 2007
- [j28]Zengjian Hu, Donnell Bowen, William M. Southerland, Antonio del Sol, Yongping Pan, Ruth Nussinov, Buyong Ma:
Ligand Binding and Circular Permutation Modify Residue Interaction Network in DHFR. PLoS Comput. Biol. 3(6) (2007) - [j27]Keren Lasker, Oranit Dror, Maxim Shatsky, Ruth Nussinov, Haim J. Wolfson:
EMatch: Discovery of High Resolution Structural Homologues of Protein Domains in Intermediate Resolution Cryo-EM Maps. IEEE ACM Trans. Comput. Biol. Bioinform. 4(1): 28-39 (2007) - [c17]Yuval Inbar, Dina Schneidman-Duhovny, Oranit Dror, Ruth Nussinov, Haim J. Wolfson:
Deterministic Pharmacophore Detection Via Multiple Flexible Alignment of Drug-Like Molecules. RECOMB 2007: 412-429 - 2006
- [j26]Gilad Wainreb, Nurit Haspel, Haim J. Wolfson, Ruth Nussinov:
A permissive secondary structure-guided superposition tool for clustering of protein fragments toward protein structure prediction via fragment assembly. Bioinform. 22(11): 1343-1352 (2006) - [j25]Maxim Shatsky, Alexandra Shulman-Peleg, Ruth Nussinov, Haim J. Wolfson:
The Multiple Common Point Set Problem and Its Application to Molecule Binding Pattern Detection. J. Comput. Biol. 13(2): 407-428 (2006) - [j24]Oranit Dror, Ruth Nussinov, Haim J. Wolfson:
The ARTS web server for aligning RNA tertiary structures. Nucleic Acids Res. 34(Web-Server-Issue): 412-415 (2006) - [j23]Chung-Jung Tsai, Jie Zheng, Ruth Nussinov:
Designing a Nanotube Using Naturally Occurring Protein Building Blocks. PLoS Comput. Biol. 2(4) (2006) - 2005
- [j22]Yuval Inbar, Haim J. Wolfson, Ruth Nussinov:
Multiple Docking for Protein Structure Prediction. Int. J. Robotics Res. 24(2-3): 131-150 (2005) - [j21]Utkan Ogmen, Ozlem Keskin, A. Selim Aytuna, Ruth Nussinov, Attila Gürsoy:
PRISM: protein interactions by structural matching. Nucleic Acids Res. 33(Web-Server-Issue): 331-336 (2005) - [j20]Alexandra Shulman-Peleg, Ruth Nussinov, Haim J. Wolfson:
SiteEngines: recognition and comparison of binding sites and protein-protein interfaces. Nucleic Acids Res. 33(Web-Server-Issue): 337-341 (2005) - [j19]Dina Schneidman-Duhovny, Yuval Inbar, Ruth Nussinov, Haim J. Wolfson:
PatchDock and SymmDock: servers for rigid and symmetric docking. Nucleic Acids Res. 33(Web-Server-Issue): 363-367 (2005) - [c16]Alexandra Shulman-Peleg, Maxim Shatsky, Ruth Nussinov, Haim J. Wolfson:
MAPPIS: Multiple 3D Alignment of Protein-Protein Interfaces. CompLife 2005: 91-103 - [c15]Oranit Dror, Ruth Nussinov, Haim J. Wolfson:
ARTS: alignment of RNA tertiary structures. ECCB/JBI 2005: 53 - [c14]Maxim Shatsky, Alexandra Shulman-Peleg, Ruth Nussinov, Haim J. Wolfson:
Recognition of Binding Patterns Common to a Set of Protein Structures. RECOMB 2005: 440-455 - [c13]Keren Lasker, Oranit Dror, Ruth Nussinov, Haim J. Wolfson:
Discovery of Protein Substructures in EM Maps. WABI 2005: 423-434 - 2004
- [j18]Maxim Shatsky, Ruth Nussinov, Haim J. Wolfson:
FlexProt: Alignment of Flexible Protein Structures Without a Predefinition of Hinge Regions. J. Comput. Biol. 11(1): 83-106 (2004) - [j17]Maxim Shatsky, Oranit Dror, Dina Schneidman-Duhovny, Ruth Nussinov, Haim J. Wolfson:
BioInfo3D: a suite of tools for structural bioinformatics. Nucleic Acids Res. 32(Web-Server-Issue): 503-507 (2004) - [c12]Alexandra Shulman-Peleg, Shira Mintz, Ruth Nussinov, Haim J. Wolfson:
Protein-Protein Interfaces: Recognition of Similar Spatial and Chemical Organizations. WABI 2004: 194-205 - 2003
- [c11]Oranit Dror, Hadar Benyamini, Ruth Nussinov, Haim J. Wolfson:
MASS: multiple structural alignment by secondary structures. ISMB (Supplement of Bioinformatics) 2003: 95-104 - [c10]Yuval Inbar, Hadar Benyamini, Ruth Nussinov, Haim J. Wolfson:
Protein structure prediction via combinatorial assembly of sub-structural units. ISMB (Supplement of Bioinformatics) 2003: 158-168 - 2002
- [c9]Dina Duhovny, Ruth Nussinov, Haim J. Wolfson:
Efficient Unbound Docking of Rigid Molecules. WABI 2002: 185-200 - [c8]Maxim Shatsky, Ruth Nussinov, Haim J. Wolfson:
MultiProt - A Multiple Protein Structural Alignment Algorithm. WABI 2002: 235-250 - 2001
- [j16]Sandeep Kumar, Haim J. Wolfson, Ruth Nussinov:
Protein flexibility and electrostatic interactions. IBM J. Res. Dev. 45(3): 499-512 (2001) - [j15]Chung-Jung Tsai, Buyong Ma, Yuk Yin Sham, Sandeep Kumar, Haim J. Wolfson, Ruth Nussinov:
A hierarchical, building-block-based computational scheme for protein structure prediction. IBM J. Res. Dev. 45(3): 513-524 (2001) - [j14]Nathaniel Leibowitz, Ruth Nussinov, Haim J. Wolfson:
MUSTA - A General, Efficient, Automated Method for Multiple Structure Alignment and Detection of Common Motifs: Application to Proteins. J. Comput. Biol. 8(2): 93-121 (2001) - 2000
- [c7]Maxim Shatsky, Zipora Y. Fligelman, Ruth Nussinov, Haim J. Wolfson:
Alignment of Flexible Protein Structures. ISMB 2000: 329-343
1990 – 1999
- 1999
- [c6]Nathaniel Leibowitz, Zipora Y. Fligelman, Ruth Nussinov, Haim J. Wolfson:
Multiple Structural Alignment and Core Detection by Geometric Hashing. ISMB 1999: 169-177 - 1998
- [j13]Bilha Sandak, Ruth Nussinov, Haim J. Wolfson:
A Method for Biomolecular Structural Recognition and Docking Allowing Conformational Flexibility. J. Comput. Biol. 5(4): 631-654 (1998) - [c5]Ruth Nussinov, Raquel Norel, Bilha Sandak, George Verbitsky, Haim J. Wolfson:
[Invited Lecture] Structural motifs in the interior and on the surfaces of protein monomers and at protein-protein interfaces. German Conference on Bioinformatics 1998 - 1996
- [c4]Bilha Sandak, Ruth Nussinov, Haim J. Wolfson:
Docking of Conformationally Flexible Proteins. CPM 1996: 271-287 - 1995
- [j12]Bilha Sandak, Ruth Nussinov, Haim J. Wolfson:
An automated computer vision and robotics-based technique for 3-D flexible biomolecular docking and matching. Comput. Appl. Biosci. 11(1): 87-99 (1995) - 1994
- [c3]Daniel Fischer, Shuo L. Lin, Ruth Nussinov, Haim J. Wolfson:
Docking of protein molecules. ICPR (2) 1994: 145-149 - 1993
- [c2]Daniel Fischer, Raquel Norel, Ruth Nussinov, Haim J. Wolfson:
3-D Docking of Protein Molecules. CPM 1993: 20-34 - 1992
- [c1]Daniel Fischer, Ruth Nussinov, Haim J. Wolfson:
3-D Substructure Matching in Protein Molecules. CPM 1992: 136-150 - 1991
- [j11]Ruth Nussinov:
Compositional variations in DNA sequences. Comput. Appl. Biosci. 7(3): 287-293 (1991) - [j10]Ruth Nussinov:
Signals in DNA sequences and their potential properties. Comput. Appl. Biosci. 7(3): 295-299 (1991)
1980 – 1989
- 1989
- [j9]Shu-Yun Le, John Owens, Ruth Nussinov, Jih-Hsiang Chen, Bruce A. Shapiro, Jacob V. Maizel:
RNA secondary structures: comparison and determination of frequently recurring substructures by consensus. Comput. Appl. Biosci. 5(3): 205-210 (1989) - 1988
- [j8]Gad M. Landau, Uzi Vishkin, Ruth Nussinov:
Locating alignments with k differences for nucleotide and amino acid sequences. Comput. Appl. Biosci. 4(1): 19-24 (1988) - [j7]John Owens, Devjani Chatterjee, Ruth Nussinov, Andrzej K. Konopka, Jacob V. Maizel:
A fixed-point alignment technique for detection of recurrent and common sequence motifs associated with biological features. Comput. Appl. Biosci. 4(1): 73-77 (1988) - [j6]Shu-Yun Le, Jih-Hsiang Chen, Ruth Nussinov, Jacob V. Maizel:
An improved secondary structure computation method and its application to intervening sequence in the human alpha-likeglobin mRNA precursors. Comput. Appl. Biosci. 4(3): 337-344 (1988) - 1986
- [j5]Gad M. Landau, Uzi Vishkin, Ruth Nussinov:
An efficient string matching algorithm with k differences for nucleotide and amino acid sequences. Nucleic Acids Res. 14(1): 31-46 (1986) - [j4]Bruce A. Shapiro, Ruth Nussinov, Lewis E. Lipkin, Jacob V. Maizel:
A sequence analysis system encompassing rules for DNA helical distortion. Nucleic Acids Res. 14(1): 75-86 (1986) - 1984
- [j3]Eliahu Comay, Ruth Nussinov, Oded Comay:
An accelerated algorithm for calculating the secondary structure of single stranded RNAs. Nucleic Acids Res. 12(1): 53-66 (1984) - 1982
- [j2]Ruth Nussinov, Ignacio Tinoco Jr., A. B. Jacobson:
Small changes in free energy assignments for unpaired bases do not affect predicted secondary structures in single stranded RNA. Nucleic Acids Res. 10(1): 341-349 (1982) - [j1]Ruth Nussinov, Ignacio Tinoco Jr., A. B. Jacobson:
Secondary structure model for the complete simian virus 50 late precursor mRNA. Nucleic Acids Res. 10(1): 351-363 (1982)
Coauthor Index
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Citation data
Add a list of citing articles from and to record detail pages.
load citations from opencitations.net
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OpenAlex data
Load additional information about publications from 
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last updated on 2024-12-02 22:31 CET by the dblp team
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