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Aline Lee

    Aline Lee

    Understanding how population dynamics are influenced by species interactions and the surrounding community is crucial for addressing many ecological questions, but requires modelling of complex systems involving direct, indirect and often... more
    Understanding how population dynamics are influenced by species interactions and the surrounding community is crucial for addressing many ecological questions, but requires modelling of complex systems involving direct, indirect and often asymmetric species interactions. Progress in developing multispecies models that can tackle this task is being made in multiple subfields of ecology, often with varying approaches and end goals but also facing shared challenges. We review some of the main challenges and the ways in which they are being addressed, highlighting a wide variety of methods that can support the development of multispecies models for understanding population dynamics. The main challenges that we examine are estimation of species interactions from limited data, the necessity of simplifications, and handling uncertainty in complex, multispecies models. In addition to reviewing a wide variety of approaches and methods for dealing with these challenges, we discuss future dire...
    This release provides the source code and data for our paper <em>Harvesting can stabilize population fluctuations and buffer the impacts of extreme climatic events</em> upon the date of Acceptance in Ecology Letters... more
    This release provides the source code and data for our paper <em>Harvesting can stabilize population fluctuations and buffer the impacts of extreme climatic events</em> upon the date of Acceptance in Ecology Letters (24-12-2021). DOI: 10.22541/au.163715862.25634478/v1
    Harvesting can magnify the destabilising effects of environmental perturbations on population dynamics and, thereby, increase extinction risk. However, population‐dynamic theory predicts that impacts of harvesting depend on the type and... more
    Harvesting can magnify the destabilising effects of environmental perturbations on population dynamics and, thereby, increase extinction risk. However, population‐dynamic theory predicts that impacts of harvesting depend on the type and strength of density‐dependent regulation. Here, we used logistic population growth models and an empirical reindeer case study to show that low to moderate harvesting can actually buffer populations against environmental perturbations. This occurs because of density‐dependent environmental stochasticity, where negative environmental impacts on vital rates are amplified at high population density due to intra‐specific resource competition. Simulations from our population models show that even low levels of harvesting may prevent overabundance, thereby dampening population fluctuations and reducing the risk of population collapse and quasi‐extinction following environmental perturbations. Thus, depending on the species' life history and the strengt...
    In nature, individual reproductive success is seldom independent from year to year, due to factors such as reproductive costs and individual heterogeneity. However, population projection models that incorporate temporal autocorrelations... more
    In nature, individual reproductive success is seldom independent from year to year, due to factors such as reproductive costs and individual heterogeneity. However, population projection models that incorporate temporal autocorrelations in individual reproduction can be difficult to parameterize, particularly when data are sparse. We therefore examine whether such models are necessary to avoid biased estimates of stochastic population growth and extinction risk, by comparing output from a matrix population model that incorporates reproductive autocorrelations to output from a standard age-structured matrix model that does not. We use a range of parameterizations, including a case study using moose data, treating probabilities of switching reproductive class as either fixed or fluctuating. Expected time to extinction from the two models is found to differ by only small amounts (under 10%) for most parameterizations, indicating that explicitly accounting for individual reproductive autocorrelations is in most cases not necessary to avoid bias in extinction estimates
    Quantifying how key life-history traits respond to climatic change is fundamental in understanding and predicting long-term population prospects. Age at first reproduction (AFR), which affects fitness and population dynamics, may be... more
    Quantifying how key life-history traits respond to climatic change is fundamental in understanding and predicting long-term population prospects. Age at first reproduction (AFR), which affects fitness and population dynamics, may be influenced by environmental stochasticity but has rarely been directly linked to climate change. Here, we use a case study from the highly seasonal and stochastic environment in High-Arctic Svalbard, with strong temporal trends in breeding conditions, to test whether rapid climate warming may induce changes in AFR in barnacle geese, Branta leucopsis. Using long-term mark–recapture and reproductive data (1991–2017), we developed a multi-event model to estimate individual AFR (i.e. when goslings are produced). The annual probability of reproducing for the first time was negatively affected by population density but only for 2 year old, the earliest age of maturity. Furthermore, advanced spring onset (SO) positively influenced the probability of reproducing...
    Quantifying how key life-history traits respond to climatic change is fundamental in understanding and predicting long-term population prospects. Age at first reproduction (AFR), which affects fitness and population dynamics, may be... more
    Quantifying how key life-history traits respond to climatic change is fundamental in understanding and predicting long-term population prospects. Age at first reproduction (AFR), which affects fitness and population dynamics, may be influenced by environmental stochasticity but has rarely been directly linked to climate change. Here, we use a case study from the highly seasonal and stochastic environment in High-Arctic Svalbard, with strong temporal trends in breeding conditions, to test whether rapid climate warming may induce changes in AFR in barnacle geese, Branta leucopsis. Using long-term mark–recapture and reproductive data (1991–2017), we developed a multi-event model to estimate individual AFR (i.e. when goslings are produced). The annual probability of reproducing for the first time was negatively affected by population density but only for 2 year old, the earliest age of maturity. Furthermore, advanced spring onset (SO) positively influenced the probability of reproducing...
    Inbreeding increases parent–offspring relatedness and commonly reduces offspring viability, shaping selection on reproductive interactions involving relatives and associated parental investment (PI). Nevertheless, theories predicting... more
    Inbreeding increases parent–offspring relatedness and commonly reduces offspring viability, shaping selection on reproductive interactions involving relatives and associated parental investment (PI). Nevertheless, theories predicting selection for inbreeding versus inbreeding avoidance and selection for optimal PI have only been considered separately, precluding prediction of optimal PI and associated reproductive strategy given inbreeding. We unify inbreeding and PI theory, demonstrating that optimal PI increases when a female's inbreeding decreases the viability of her offspring. Inbreeding females should therefore produce fewer offspring due to the fundamental trade-off between offspring number and PI. Accordingly, selection for inbreeding versus inbreeding avoidance changes when females can adjust PI with the degree that they inbreed. By contrast, optimal PI does not depend on whether a focal female is herself inbred. However, inbreeding causes optimal PI to increase given strict monogamy and associated biparental investment compared with female-only investment. Our model implies that understanding evolutionary dynamics of inbreeding strategy, inbreeding depression, and PI requires joint consideration of the expression of each in relation to the other. Overall, we demonstrate that existing PI and inbreeding theories represent special cases of a more general theory, implying that intrinsic links between inbreeding and PI affect evolution of behaviour and intrafamilial conflict.
    Harvesting can have a substantial impact on population dynamics and individual performance in wild populations. While the direct consequences of harvest on individual survival and population growth rate are often apparent, harvesting can... more
    Harvesting can have a substantial impact on population dynamics and individual performance in wild populations. While the direct consequences of harvest on individual survival and population growth rate are often apparent, harvesting can also have indirect and more subtle demographic consequences. Disentangling these consequences, however, requires in-depth knowledge of individual life histories of both females and males in the population. Here, we summarise demographic research on a population where such data exist: the Vega moose population in northern Norway. In this population, vital rates vary considerably among both females and males, and harvesting increases this variation by generating positive covariation between reproductive performance and survival. The skewed age and sex structure, which is typical of many harvested populations, also has demographic consequences: it reduces the ratio of effective to total population size and influences variation in vital rates in males a...
    Harvesting can magnify the destabilizing effects of environmental perturbations on population dynamics and, thereby, increase extinction risk. However, population-dynamic theory predicts that impacts of harvesting depend on the type and... more
    Harvesting can magnify the destabilizing effects of environmental perturbations on population dynamics and, thereby, increase extinction risk. However, population-dynamic theory predicts that impacts of harvesting depend on the type and strength of density-dependent regulation. Here, we used logistic population growth models and an empirical reindeer case study to show that low to moderate harvesting can actually buffer populations against environmental perturbations. This occurs because of density-dependent environmental stochasticity, where negative environmental impacts on vital rates are amplified at high population density due to intraspecific resource competition. Simulations from our population models show that even low levels of harvesting may prevent overabundance, thereby dampening population fluctuations and reducing the risk of population collapse and quasi-extinction following environmental perturbations. Thus, depending on the species’ life history and the strength of ...
    The degree of spatial autocorrelation in population fluctuations increases with dispersal and geographical covariation in the environment, and decreases with strength of density dependence. Because the effects of these processes can vary... more
    The degree of spatial autocorrelation in population fluctuations increases with dispersal and geographical covariation in the environment, and decreases with strength of density dependence. Because the effects of these processes can vary throughout an individual’s lifespan, we studied how spatial autocorrelation in abundance changed with age in three marine fish species in the Barents Sea. We found large interspecific differences in age‐dependent patterns of spatial autocorrelation in density. Spatial autocorrelation increased with age in cod, the reverse trend was found in beaked redfish, while it remained constant among age classes in haddock. We also accounted for the average effect of local cohort dynamics, i.e. the expected local density of an age class given last year’s local density of the cohort, with the goal of disentangling spatial autocorrelation patterns acting on an age class from those formed during younger age classes and being carried over. We found that the spatial...
    Quantifying how key life-history traits respond to climatic change is fundamental in understanding and predicting long-term population prospects . Age at first reproduction (AFR), which affects fitness and population dynamics, may be... more
    Quantifying how key life-history traits respond to climatic change is fundamental in understanding and predicting long-term population prospects . Age at first reproduction (AFR), which affects fitness and population dynamics, may be influenced by environmental stochasticity but has rarely been directly linked to climate change . Here, we use a case study from the highly seasonal and stochastic environment in High-Arctic Svalbard, with strong temporal trends in breeding conditions, to test whether rapid climate warming may induce changes in AFR in barnacle geese, Branta leucopsis . Using long-term mark–recapture and reproductive data (1991–2017) , we developed a multi-event model to estimate individual AFR (i.e. when goslings are produced). The annual probability of reproducing for the first time was negatively affected by population density but only for 2 year olds, the earliest age of maturity. Furthermore, advanced spring onset (SO) positively influenced the probability of reprod...
    The world is spatially autocorrelated. Both abiotic and biotic properties are more similar among neighboring than distant locations, and their temporal co‐fluctuations also decrease with distance. P. A. P. Moran realized the ecological... more
    The world is spatially autocorrelated. Both abiotic and biotic properties are more similar among neighboring than distant locations, and their temporal co‐fluctuations also decrease with distance. P. A. P. Moran realized the ecological importance of such ‘spatial synchrony’ when he predicted that isolated populations subject to identical log‐linear density‐dependent processes should have the same correlation in fluctuations of abundance as the correlation in environmental noise. The contribution from correlated weather to synchrony of populations has later been coined the ‘Moran effect’. Here, we investigate the potential role of the Moran effect in large‐scale ecological outcomes of global warming. Although difficult to disentangle from dispersal and species interaction effects, there is compelling evidence from across taxa and ecosystems that spatial environmental synchrony causes population synchrony. Given this, and the accelerating number of studies reporting climate change eff...
    Levels of random genetic drift are influenced by demographic factors, such as mating system, sex ratio and age structure. The effective population size (Ne) is a useful measure for quantifying genetic drift. Evaluating relative... more
    Levels of random genetic drift are influenced by demographic factors, such as mating system, sex ratio and age structure. The effective population size (Ne) is a useful measure for quantifying genetic drift. Evaluating relative contributions of different demographic factors to Ne is therefore important to identify what makes a population vulnerable to loss of genetic variation. Until recently, models for estimating Ne have required many simplifying assumptions, making them unsuitable for this task. Here, using data from a small, harvested moose population, we demonstrate the use of a stochastic demographic framework allowing for fluctuations in both population size and age distribution to estimate and decompose the total demographic variance and hence the ratio of effective to total population size (Ne/N) into components originating from sex, age, survival and reproduction. We not only show which components contribute most to Ne/N currently, but also which components have the greate...
    Extreme climate events often cause population crashes but are difficult to account for in population-dynamic studies. Especially in long-lived animals, density dependence and demography may induce lagged impacts of perturbations on... more
    Extreme climate events often cause population crashes but are difficult to account for in population-dynamic studies. Especially in long-lived animals, density dependence and demography may induce lagged impacts of perturbations on population growth. In Arctic ungulates, extreme rain-on-snow and ice-locked pastures have led to severe population crashes, indicating that increasingly frequent rain-on-snow events could destabilize populations. Here, using empirically parameterized, stochastic population models for High-Arctic wild reindeer, we show that more frequent rain-on-snow events actually reduce extinction risk and stabilize population dynamics due to interactions with age structure and density dependence. Extreme rain-on-snow events mainly suppress vital rates of vulnerable ages at high population densities, resulting in a crash and a new population state with resilient ages and reduced population sensitivity to subsequent icy winters. Thus, observed responses to single extreme...
    Summary Adult individuals that do not breed in a given year occur in a wide range of natural populations. However, such nonbreeders are often ignored in theoretical and empirical population studies, limiting our knowledge of how... more
    Summary Adult individuals that do not breed in a given year occur in a wide range of natural populations. However, such nonbreeders are often ignored in theoretical and empirical population studies, limiting our knowledge of how nonbreeders affect realized and estimated population dynamics and potentially impeding projection of deterministic and stochastic population growth rates. We present and analyse a general modelling framework for systems where breeders and nonbreeders differ in key demographic rates, incorporating different forms of nonbreeding, different life histories and frequency‐dependent effects of nonbreeders on demographic rates of breeders. Comparisons of estimates of deterministic population growth rate, λ, and demographic variance, , from models with and without distinct nonbreeder classes show that models that do not explicitly incorporate nonbreeders give upwardly biased estimates of , particularly when the equilibrium ratio of nonbreeders to breeders, , is high....
    Inbreeding increases parent-offspring relatedness and commonly reduces offspring viability, shaping selection on reproductive interactions involving relatives and associated parental investment (PI). Nevertheless, theories predicting... more
    Inbreeding increases parent-offspring relatedness and commonly reduces offspring viability, shaping selection on reproductive interactions involving relatives and associated parental investment (PI). Nevertheless, theories predicting selection for inbreeding versus inbreeding avoidance and selection for optimal PI have only been considered separately, precluding prediction of optimal PI and associated reproductive strategy given inbreeding. We unify inbreeding and PI theory, demonstrating that optimal PI increases when a female's inbreeding decreases the viability of her offspring. Inbreeding females should therefore produce fewer offspring due to the fundamental trade-off between offspring number and PI. Accordingly, selection for inbreeding versus inbreeding avoidance changes when females can adjust PI with the degree that they inbreed. In contrast, optimal PI does not depend on whether a focal female is herself inbred. However, inbreeding causes optimal PI to increase given s...
    The cumulative effects of climate warming on herbivore vital rates and population dynamics are hard to predict, given that the expected effects differ between seasons. In the Arctic, warmer summers enhance plant growth which should lead... more
    The cumulative effects of climate warming on herbivore vital rates and population dynamics are hard to predict, given that the expected effects differ between seasons. In the Arctic, warmer summers enhance plant growth which should lead to heavier and more fertile individuals in the autumn. Conversely, warm spells in winter with rainfall (rain‐on‐snow) can cause ‘icing’, restricting access to forage, resulting in starvation, lower survival and fecundity. As body condition is a ‘barometer’ of energy demands relative to energy intake, we explored the causes and consequences of variation in body mass of wild female Svalbard reindeer (Rangifer tarandus platyrhynchus) from 1994 to 2015, a period of marked climate warming. Late winter (April) body mass explained 88% of the between‐year variation in population growth rate, because it strongly influenced reproductive loss, and hence subsequent fecundity (92%), as well as survival (94%) and recruitment (93%). Autumn (October) body mass affec...
    ABSTRACT
    Life‐history theory predicts that the vital rates that influence population growth the most should be buffered against environmental fluctuations due to selection for reduced variation. However, it remains unclear whether populations... more
    Life‐history theory predicts that the vital rates that influence population growth the most should be buffered against environmental fluctuations due to selection for reduced variation. However, it remains unclear whether populations actually are influenced by such “demographic buffering,” because variation in vital rates can be compared on different measurement scales, and there has been little attempt to investigate whether the choice of scale influences the chance of detecting demographic buffering. We compared two statistical approaches to examine whether demographic buffering has influenced vital rates in wild Svalbard reindeer (Rangifer tarandus platyrhynchus). To account for statistical variance constraints on vital rates limited between 0 and 1 in analyses of demographic buffering, one approach is to scale observed variation by the maximum possible variation on the arithmetic scale. When applying this approach, the results suggested that demographic buffering was occurring. ...
    We develop an integrated population model for Svalbard reindeer Rangifer tarandus platyrhynchus, and demonstrate how this type of model can be used to extract more information from the data and separate different sources of variability in... more
    We develop an integrated population model for Svalbard reindeer Rangifer tarandus platyrhynchus, and demonstrate how this type of model can be used to extract more information from the data and separate different sources of variability in population estimates. Our model combines individual mark–recapture data with population counts and harvesting data within a Bayesian model framework, and accounts for observation error, environmental and demographic stochasticity, and age structure. From this model we obtain annual estimates of age‐specific population size, survival and fecundity. The model provides estimates of age structure at a finer scale than that found in the census data, and enables us to estimate survival for the period before calves are first caught and marked, i.e. before they enter the individual mark–recapture data. The modeling framework provides an improved approach to studying age‐structured populations that are imperfectly censused and where the demography of only a...
    Mechanisms generating inequalities among males in reproductive success are key to understanding the evolutionary significance of sexual selection. This paper develops a stochastic model to quantitatively describe and analyze mating... more
    Mechanisms generating inequalities among males in reproductive success are key to understanding the evolutionary significance of sexual selection. This paper develops a stochastic model to quantitatively describe and analyze mating systems on a continuous scale from strict monogamy to extreme polygyny. The variance in male mating success is shown to increase with increased differences among males, with decreased interdependence of mating events, with increased population size, and with an increased number of females per male. The latter condition decreases the opportunity for sexual selection. It is found that different combinations of mating system characteristics can lead to the same variance in male mating success, although the distribution differs. This emphasizes the importance of using a model of this type to study mating systems, rather than relying solely on the variance in reproductive success as a descriptor of different systems.
    Ratios of effective populations size,Ne, to census population size,N, are used as a measure of genetic drift in populations. Several life-history parameters have been shown to affect these ratios, including mating system and age at sexual... more
    Ratios of effective populations size,Ne, to census population size,N, are used as a measure of genetic drift in populations. Several life-history parameters have been shown to affect these ratios, including mating system and age at sexual maturation. Using a stochastic matrix model, we examine how different levels of persistent individual differences in mating success among males may affectNe/N, and how this relates to generation time. Individual differences of this type are shown to cause a lowerNe/Nratio than would be expected when mating is independent among seasons. Examining the way in which age at maturity affectsNe/N, we find that both the direction and magnitude of the effect depends on the survival rate of juveniles in the population. In particular, when maturation is delayed, lowered juvenile survival causes higher levels of genetic drift. In addition, predicted shifts inNe/Nwith changing age at maturity are shown to be dependent on which of the commonly used definitions o...
    Page 1. Stochastic Modeling of Mating Systems and their Effect on Population Dynamics and Genetics Thesis for the degree of Philosophiae Doctor Trondheim, March 2011 Norwegian University of Science and Technology Faculty of Natural... more
    Page 1. Stochastic Modeling of Mating Systems and their Effect on Population Dynamics and Genetics Thesis for the degree of Philosophiae Doctor Trondheim, March 2011 Norwegian University of Science and Technology Faculty of Natural Sciences and Technology ...
    Arctic ungulates are experiencing the most rapid climate warming on Earth. While concerns have been raised that more frequent icing events may cause die‐offs, and earlier springs may generate a trophic mismatch in phenology, the effects... more
    Arctic ungulates are experiencing the most rapid climate warming on Earth. While concerns have been raised that more frequent icing events may cause die‐offs, and earlier springs may generate a trophic mismatch in phenology, the effects of warming autumns have been largely neglected. We used 25 years of individual‐based data from a growing population of wild Svalbard reindeer, to test how warmer autumns enhance population growth. Delayed plant senescence had no effect, but a six‐week delay in snow‐onset (the observed data range) was estimated to increase late winter body mass by 10%. Because average late winter body mass explains 90% of the variation in population growth rates, such a delay in winter‐onset would enable a population growth of r = 0.20, sufficient to counteract all but the most extreme icing events. This study provides novel mechanistic insights into the consequences of climate change for Arctic herbivores, highlighting the positive impact of warming autumns on popula...