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    Thomas Jenkins

    Our approach is based on (a) building representations of prototypical scenarios, e.g., launching a satellite, in a large knowledge-base, (b) extracting fragments of information from the text of interest using NLP techniques, e.g.,... more
    Our approach is based on (a) building representations of prototypical scenarios, e.g., launching a satellite, in a large knowledge-base, (b) extracting fragments of information from the text of interest using NLP techniques, e.g., subject-verb-object relations, and then (c) identifying which of the scenario(s) best match the processed input text. The system thus has strong expectations about what sort of things might happen in the world, and we seek to exploit those expectations for interpreting text, including resolving the many types of ambiguity which can arise. After matching, the background representations provide a source of additional facts about the situation described in the text, including the large number of facts assumed but not explicitly mentioned. This additional knowledge can be used for supporting inference, question-answering, and advanced search of a text corpus. For example, a query for rocket launch events would identify (1) as relevant, even though rockets are ...
    Models to predict heat production attributable to maintenance and support metabolism in growing and mature cattle were developed on the basis of three concepts. The first concept is that animals fed fixed amounts of the same diet achieve... more
    Models to predict heat production attributable to maintenance and support metabolism in growing and mature cattle were developed on the basis of three concepts. The first concept is that animals fed fixed amounts of the same diet achieve weight equilibrium over an extended feeding period, and that the ME consumed at weight equilibrium is the maintenance requirement. The second concept is that a part of the heat production resulting from ME consumed above the maintenance requirement is associated with an elevation of vital functions (support metabolism), and this heat production can be modeled as a function of the level of feeding. The third concept is that previous levels of nutrition affect current estimates of heat production, and that this impact can be modeled as a delayed response in heat production associated with support metabolism. Experimental data on feed consumption showed that maintenance requirements varied in simple proportion to BW, not only for different breeds of ma...
    The objective of this study was to determine whether serum concentrations of growth hormone (GH), IGF-I, IGF binding proteins (IGFBP), and glucose at wk 2 and 10 postpartum were associated with the ability of postpartum beef cows to... more
    The objective of this study was to determine whether serum concentrations of growth hormone (GH), IGF-I, IGF binding proteins (IGFBP), and glucose at wk 2 and 10 postpartum were associated with the ability of postpartum beef cows to resume cycling when maintained on a limited nutrient environment. Cows (n = 29) were individually fed either 130 or 170 kcal ME x BW-75 x d-1 during nonlactation and 170 or 210 kcal ME x BW-75 x d-1 during lactation for an average of 4.1 yr before sample collection. The proportion of cows that resumed estrus within 20 wk after parturition was less (P < .05) at the lower feeding rate (5 of 14) than at the higher feeding rate (11 of 15). Concentrations of IGF-I increased from wk 2 to 10 in cows that resumed cycling but not in cows that remained anestrous and were less (P < .05) at wk 2 and 10 in cows that remained anestrous compared to cows that resumed cycling. Circulating amounts of IGFBP-2 at wk 2 were greater (P < .05) and IGFBP-3 concentratio...
    The frequency of the HLA linked iron-loading gene was assessed in 1783 Afrikaner men over the age of 40 years living in the South Western Cape. Measurements, made on three occasions over a 4.5 year period, included the serum ferritin... more
    The frequency of the HLA linked iron-loading gene was assessed in 1783 Afrikaner men over the age of 40 years living in the South Western Cape. Measurements, made on three occasions over a 4.5 year period, included the serum ferritin concentration, a screening test for reduced unsaturated iron-binding capacity and the percentage transferrin saturation. The serum gamma-glutamyl transferase concentration was used as a marker of alcohol abuse. The diagnosis of homozygosity was based on a serum ferritin concentration that was persistently greater than 400 micrograms l-1 and a percentage transferrin saturation greater than 55%. Using these criteria, 17 subjects were diagnosed as homozygous, corresponding to a disease frequency of 0.0095, a gene frequency of 0.0976 and a heterozygote frequency of 0.176 (95% confidence limits: 0.135-0.213). None of the subjects had overt clinical haemochromatosis. Typing for the HLA-A, -B, -C and -DR loci showed that the HLA-A3 allele (frequency 0.6471 and relative risk 4.4) was the only independent marker for the iron-loading gene in this asymptomatic population. Using the present approach it was not possible to distinguish between heterozygotes, alcohol abusers and normal subjects with serum ferritin concentrations at the upper end of the normal range.
    The expansion of the Electron Diffusion Gauge (EDG) pure electron plasma due to collisions with background neutral gas atoms is characterized by the pressure and magnetic field scaling of the profile expansion rate (d/dt)<r2>. Data... more
    The expansion of the Electron Diffusion Gauge (EDG) pure electron plasma due to collisions with background neutral gas atoms is characterized by the pressure and magnetic field scaling of the profile expansion rate (d/dt)<r2>. Data obtained at higher background gas pressures [1] than previously studied [2] is presented. The measured expansion rate in the higher pressure regime is found to
    The evolution of the amplitude of the m=1 diocotron mode is used to measure the background neutral pressure in the Electron Diffusion Gauge (EDG), a Malmberg-Penning trap. Below 5×10-8 Torr, the dependence on pressure scales as P1/4, and... more
    The evolution of the amplitude of the m=1 diocotron mode is used to measure the background neutral pressure in the Electron Diffusion Gauge (EDG), a Malmberg-Penning trap. Below 5×10-8 Torr, the dependence on pressure scales as P1/4, and is sensitive to pressure changes as small as DeltaP=5×10-11 Torr. Previous studies on the EDG showed that the diocotron mode is more
    Abstract:Estimating the amounts,of residues,remaining after munitions,detonate,is complicated by the presence of residues from previous,detonations,and the difficulty ineasily,obtaining,adequately,sized samples,to over- come,spatial... more
    Abstract:Estimating the amounts,of residues,remaining after munitions,detonate,is complicated by the presence of residues from previous,detonations,and the difficulty ineasily,obtaining,adequately,sized samples,to over- come,spatial heterogeneity,in residue deposition. This study was,conducted,to assess the use of snow-covered ranges to provide these types of estimates. Specifically, two,snow-covered,ranges,were,used,to estimate,the
    Estimation of the amounts of residues resulting from high-order detonation of munitions is complicated by the presence of residues from previous detonations and the inability to easily obtain adequately-sized samples to overcome spatial... more
    Estimation of the amounts of residues resulting from high-order detonation of munitions is complicated by the presence of residues from previous detonations and the inability to easily obtain adequately-sized samples to overcome spatial heterogeneity in residue deposition. This study was conducted to assess the use of snow-covered ranges to provide these types of estimates. Specifically, snow-covered ranges were used to
    Abstract: Snow was used as a collection medium to examine explosives residues following the high-order detonation of various military munitions. After detonation, a set of large (1-sq m) samples of residue-covered snow were collected,... more
    Abstract: Snow was used as a collection medium to examine explosives residues following the high-order detonation of various military munitions. After detonation, a set of large (1-sq m) samples of residue-covered snow were collected, processed and analyzed for ...
    A field demonstration was conducted to assess the performance of eight commercially-available and emerging colorimetric, immunoassay, and biosensor on-site analytical methods for explosives 2,4,6-trinitrotoluene (TNT) and... more
    A field demonstration was conducted to assess the performance of eight commercially-available and emerging colorimetric, immunoassay, and biosensor on-site analytical methods for explosives 2,4,6-trinitrotoluene (TNT) and hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX) in ground water and leachate at the Umatilla Army Depot Activity, Hermiston, Oregon and U.S. Naval Submarine Base, Bangor, Washington, Superfund sites. Ground water samples were analyzed by each of the on-site methods and results compared to laboratory analysis using high performance liquid chromatography (HPLC) with EPA SW-846 Method 8330. The commercial methods evaluated include the EnSys, Inc., TNT and RDX colorimetric test kits (EPA SW-846 Methods 8515 and 8510) with a solid phase extraction (SPE) step, the DTECH/EM Science TNT and RDX immunoassay test kits (EPA SW-846 Methods 4050 and 4051), and the Ohmicron TNT immunoassay test kit. The emerging methods tested include the antibody-based Naval Research Laboratory (...
    Explosives are subject to several attenuation processes that potentially reduce concentrations in groundwater over time. Some of these processes are well defined, while others are poorly understood. The objective of the project was to... more
    Explosives are subject to several attenuation processes that potentially reduce concentrations in groundwater over time. Some of these processes are well defined, while others are poorly understood. The objective of the project was to optimize data collection and processing procedures for evaluation and implementation of monitored natural attenuation of explosives. After conducting experiments to optimize data quality, a protocol was
    Page 1. Soil & Sediment Contamination, 12: 631–645, 2003 Copyright © ASP ISSN: 1058-8337 print DOI: 10.1080/10588330390246206 Sampling for Explosives-Residues at Fort Greely, Alaska Marianne E. Walsh,1∗ Charles ...
    ... [CrossRef], [Web of Science ®], [CSA] View all references; Comfort et al., 199510. Comfort, SD,Shea, PJ, Hundal, LS, Li, Z., Woodbury, BL, Martin, JL and Powers, WL 1995. ... Jenkins, TF, Grant, CL, Brar, GS, Thorne, PG, Schumacher,... more
    ... [CrossRef], [Web of Science ®], [CSA] View all references; Comfort et al., 199510. Comfort, SD,Shea, PJ, Hundal, LS, Li, Z., Woodbury, BL, Martin, JL and Powers, WL 1995. ... Jenkins, TF, Grant, CL, Brar, GS, Thorne, PG, Schumacher, PW and Ranney, TA 1997. ...
    Optimum shielding of the radiation from particle accelerators requires knowledge of the attenuation characteristics of the shielding material. The most common material for shielding this radiation is concrete, which can be made using... more
    Optimum shielding of the radiation from particle accelerators requires knowledge of the attenuation characteristics of the shielding material. The most common material for shielding this radiation is concrete, which can be made using various materials of different densities as aggregates. These different concrete mixes can have very different attenuation characteristics. Information about the attenuation of leakage photons and neutrons in ordinary and heavy concrete is, however, very limited. To increase our knowledge and understanding of the radiation attenuation in concrete of various compositions, we have performed measurements of the transmission of leakage radiation, photons and neutrons, from a Varian Clinac 2100C medical linear accelerator operating at maximum electron energies of 6 and 18 MeV. We have also calculated, using Monte Carlo techniques, the leakage neutron spectra and its transmission through concrete. The results of these measurements and calculations extend the information currently available for designing shielding for medical electron accelerators. Photon transmission characteristics depend more on the manufacturer of the concrete than on the atomic composition. A possible cause for this effect is a non-uniform distribution of the high-density aggregate, typically iron, in the concrete matrix. Errors in estimated transmission of photons can exceed a factor of three, depending on barrier thickness, if attenuation in high-density concrete is simply scaled from that of normal density concrete. We found that neutron transmission through the high-density concretes can be estimated most reasonably and conservatively by using the linear tenth-value layer of normal concrete if specific values of the tenth-value layer of the high-density concrete are not known. The reason for this is that the neutron transmission depends primarily on the hydrogen content of the concrete, which does not significantly depend on concrete density. Errors of factors of two to more than ten, depending on barrier thickness, in the estimated transmission of neutrons through high-density concrete can be made if the attenuation is scaled by density from normal concrete.
    Snow was used as a collection medium to examine 1,3,5-hexahydro-1,3,5-trinitrotriazine (RDX) and 2,4,6-trinitrotoluene (TNT) residues post-detonation of 60-, 81-, and 120-mm mortar rounds, 105- and 155-mm howitzer rounds, M67 hand... more
    Snow was used as a collection medium to examine 1,3,5-hexahydro-1,3,5-trinitrotriazine (RDX) and 2,4,6-trinitrotoluene (TNT) residues post-detonation of 60-, 81-, and 120-mm mortar rounds, 105- and 155-mm howitzer rounds, M67 hand grenades, 40-mm rifle grenades, and blocks of C4. Residue-covered snow samples were collected, processed, and analyzed for explosives without cross-contamination from previous detonations and other potential matrix interferences. Detonation trials were performed following standard military live-fire and blow-in-place techniques. When possible, replicate munitions were detonated under similar conditions to provide a more reliable estimation of the mass of unconsumed high explosive residues. Overall the amount of energetic residues deposited from live-fire detonations were considerably less than the energetic residues deposited by blow-in-place detonations.
    Laser induced breakdown spectroscopy (LIBS) is a simple spark spectrochemical sensor technology in which a laser beam is directed at a sample surface to create a high-temperature microplasma and a detector used to collect the spectrum of... more
    Laser induced breakdown spectroscopy (LIBS) is a simple spark spectrochemical sensor technology in which a laser beam is directed at a sample surface to create a high-temperature microplasma and a detector used to collect the spectrum of light emission and record its intensity at specific wavelengths. LIBS is an emerging chemical sensor technology undergoing rapid advancement in instrumentation capability and
    Amyotrophic lateral sclerosis (ALS) is a progressive, incurable and fatal neurodegenerative disease. Few interventions significantly alter the disease course, but many symptomatic treatments exist to improve... more
    Amyotrophic lateral sclerosis (ALS) is a progressive, incurable and fatal neurodegenerative disease. Few interventions significantly alter the disease course, but many symptomatic treatments exist to improve patients' quality of life. In this review, we describe our approach to symptomatic management of ALS and discuss the underlying evidence base. Discussion focuses predominantly on recently published articles. We cover management settings, disease-modifying treatment, vitamin D, respiratory management including noninvasive ventilation and diaphragmatic pacing, secretions, nutrition, dysphagia and gastrostomy, communication problems, mobility, spasticity, pain, cognition, depression and emotional lability, fatigue, sleep disturbance, head drop, prevention of deep venous thrombosis and end-of-life issues. Multidisciplinary specialist care appears to improve quality of life and survival. Riluzole remains the only available disease-modifying medication and confers a survival advantage of 2-3 months. Noninvasive ventilation improves quality of life and extends survival by approximately 7 months, at least in patients without severe bulbar problems. Nutrition is an independent prognostic factor; whether gastrostomy improves survival and quality of life remains unclear and further studies are underway. Many other symptomatic treatments appear helpful to individuals in clinic, but further randomized clinical trials are required to provide a more robust evidence base.