- Manchester Metropolitan University, Division of Biology and Conservation Ecology, Faculty MemberThe University of Manchester, Faculty of Life Sciences, Faculty Memberadd
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Simple Summary There are many studies that suggest that a range of animal species have personalities, and that animals can benefit from interactions with their human caregivers. However, many of these previous studies have focused only on... more
Simple Summary There are many studies that suggest that a range of animal species have personalities, and that animals can benefit from interactions with their human caregivers. However, many of these previous studies have focused only on mammals, with fewer studies focusing on reptiles. Research was undertaken at the Faunistic Park Le Cornelle, Italy, to investigate the effects of approach tests and food interaction events on 5 male and 5 female Aldabra tortoises’ (Aldrabrachelys gigantea) behavior. There were differences in behavior between tortoises, and in response to different types of events. The tortoises also responded differently to their own keepers, vets, or unfamiliar people. The personality of the tortoises were also quantified using principal component analysis. Overall, the study revealed that individuals acted significantly differently to one another, and that while females initially appeared to display a greater number of shy behaviors, this was not consistent acros...
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Amphibians support symbiotic bacterial communities on their skin that protect against a range of infectious pathogens, including the amphibian chytrid fungus. The conditions under which amphibians are maintained in captivity (e.g. diet,... more
Amphibians support symbiotic bacterial communities on their skin that protect against a range of infectious pathogens, including the amphibian chytrid fungus. The conditions under which amphibians are maintained in captivity (e.g. diet, substrate, enrichment) in ex situ conservation programmes may affect the composition of the bacterial community. In addition, ex situ amphibian populations may support different bacterial communities in comparison to in situ populations of the same species. This could have implications for the suitability of populations intended for reintroduction, as well as the success of probiotic bacterial inoculations intended to provide amphibians with a bacterial community that resists invasion by the chytrid fungus. We aimed to investigate the effect of a carotenoid-enriched diet on the culturable bacterial community associated with captive red-eyed tree frogs (Agalychnis callidryas) and make comparisons to bacteria isolated from a wild population from the Chiquibul Rainforest in Belize. We successfully showed carotenoid availability influences the overall community composition, species richness and abundance of the bacterial community associated with the skin of captive frogs, with A. callidryas fed a carotenoid-enriched diet supporting a greater species richness and abundance of bacteria than those fed a carotenoid-free diet. Our results suggest that availability of carotenoids in the diet of captive frogs is likely to be beneficial for the bacterial community associated with the skin. We also found wild A. callidryas hosted more than double the number of different bacterial species than captive frogs with very little commonality between species. This suggests frogs in captivity may support a reduced and diverged bacterial community in comparison to wild populations of the same species, which could have particular relevance for ex situ conservation projects
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We report the development and characterization of 13 novel microsatellite loci for the Caribbean queen conch, Lobatus gigas, an ecologically and commercially important marine gastropod. Paired-end sequencing was carried out on genomic DNA... more
We report the development and characterization of 13 novel microsatellite loci for the Caribbean queen conch, Lobatus gigas, an ecologically and commercially important marine gastropod. Paired-end sequencing was carried out on genomic DNA from a single queen conch using half a flow cell lane of an Illumina MiSeq. A total of 48 potentially amplifiable loci containing microsatellites were tested on 45 individuals from the Florida Keys and Bahamas. In total, 13 consistently amplifying and polymorphic microsatellite loci were identified. The number of alleles ranged from 4 to 26 and observed heterozygosities ranged from 0.340 to 1.00. There was no evidence of scoring error, large allele dropout, or evidence of linkage disequilibrium at any locus. Four loci deviated from Hardy-Weinberg equilibrium due to moderate levels of null alleles (null allele frequencies ranged from 0.081 to 0.230). Although null alleles were detected at four microsatellite loci, the high levels of polymorphism and...
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Thermal sensitivity of tropical treesA key uncertainty in climate change models is the thermal sensitivity of tropical forests and how this value might influence carbon fluxes. Sullivanet al.measured carbon stocks and fluxes in permanent... more
Thermal sensitivity of tropical treesA key uncertainty in climate change models is the thermal sensitivity of tropical forests and how this value might influence carbon fluxes. Sullivanet al.measured carbon stocks and fluxes in permanent forest plots distributed globally. This synthesis of plot networks across climatic and biogeographic gradients shows that forest thermal sensitivity is dominated by high daytime temperatures. This extreme condition depresses growth rates and shortens the time that carbon resides in the ecosystem by killing trees under hot, dry conditions. The effect of temperature is worse above 32°C, and a greater magnitude of climate change thus risks greater loss of tropical forest carbon stocks. Nevertheless, forest carbon stocks are likely to remain higher under moderate climate change if they are protected from direct impacts such as clearance, logging, or fires.Science, this issue p.869
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doi: 10.3389/fgene.2014.00072 The genetics of indirect ecological effects—plant parasites and aphid herbivores
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High-resolution phase-contrast X-ray computedtomography (CT) reveals the phoretic deutonymphof a fossil astigmatid mite (Acariformes: Astig-mata) attached to a spider’s carapace (Araneae:Dysderidae) in Eocene (44–49 Myr ago) Balticamber.... more
High-resolution phase-contrast X-ray computedtomography (CT) reveals the phoretic deutonymphof a fossil astigmatid mite (Acariformes: Astig-mata) attached to a spider’s carapace (Araneae:Dysderidae) in Eocene (44–49 Myr ago) Balticamber. Details of appendages and a sucker platewere resolved, and the resulting three-dimensionalmodel demonstrates the potential of tomographyto recover morphological characters of systematicsignificance from even the tiniest amber inclusionswithout the need for a synchrotron. Astigmatidshave an extremely sparse palaeontological record.We confirm one of the few convincing fossils,potentially the oldest record of Histiostomatidae.At 176 mm long, we believe this to be the smallestarthropodinamber tobeCT-scannedasacompletebody fossil, extending the boundaries for what canbe recovered using this technique. We also demon-strate a minimum age for the evolution of phoreticbehaviour among their deutonymphs, an ecologicaltrait used by extant species to disperse into...
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Animal personality is a growing research area due to the increasing evidence of the impact that it has on welfare, health and management of animals in captivity (Freeman and Gosling, 2010). Testing and improving existent methodologies, as... more
Animal personality is a growing research area due to the increasing evidence of the impact that it has on welfare, health and management of animals in captivity (Freeman and Gosling, 2010). Testing and improving existent methodologies, as well as develop new ones, to outline animal personality is an important step towards welfare, health and longevity of captive animals (Phillips, 2007; Whitham and Wielebnowski, 2013). Lions (Panthera leo) were chosen for this study because the species is understudied compared to other felidae species in personality matters and because it displays a vast, diverse and well known behaviour repertoire (Schaller, 1973). Behavioural observations were conducted on the seven African lions housed in ZSL Whipsnade zoo. Keeper-animal interactions were recorded and a personality questionnaire was given to the keepers in order to rate 28 personality traits (Chadwick, 2014). Sociogram, composite sociality index (CSI) and spread of participation index (SPI) were ...
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Interactions that animals experience can have a significant influence on their health and welfare. These interactions can occur between animals themselves, but also between animals and keepers, and animals and the public. Human and... more
Interactions that animals experience can have a significant influence on their health and welfare. These interactions can occur between animals themselves, but also between animals and keepers, and animals and the public. Human and non-human animals come into contact with each other in a variety of settings, and wherever there is contact there is the opportunity for interaction to take place. Interaction with companion animals are well known, but human–animal interaction (HAR) (Hosey, 2008) also occurs in the context of farms (Hemsworth and Gonyou, 1997; Hemsworth, 2003), laboratories (Chang and Hart, 2002), zoos (Kreger and Mench, 1995) and even the wild (e.g. Cassini, 2001). This project proposes a permanent monitoring scheme to record animal-human interactions and animal-animal interactions in zoos. This will be accompanied by a survey of animal personality for welfare, husbandry, breeding programs and reintroduction purposes. The pilot project is currently based on direct monito...
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Adapting coffee production to climate change is a significant challenge requiring a detailed understanding of local climatic change patterns and the consequences, both real and perceived, for coffee production. To this end, we examined... more
Adapting coffee production to climate change is a significant challenge requiring a detailed understanding of local climatic change patterns and the consequences, both real and perceived, for coffee production. To this end, we examined changes in precipitation at Mt. Kilimanjaro over the last two decades and conducted twelve focus group discussions to obtain farmers’ perceptions on climate change, the impact of extreme weather events on coffee production and the potential of shade trees as an adaptation strategy. Despite an increase in total annual precipitation, farmers are still confronted with droughts due to a shift in seasons. We found a delayed onset of the main rainy season and showed that a positive Indian Ocean Dipole contributes to the increase in precipitation during the short rainy season. Farmers clearly described the impacts of drought or excess rainfall on coffee production during flowering, maturation, and harvest. Thus, adaptation strategies need to be tailored such...
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Research Highlights: Global coffee production, especially in smallholder farming systems, is vulnerable and must adapt in the face of climate change. To this end, shaded agroforestry systems are a promising strategy. Background and... more
Research Highlights: Global coffee production, especially in smallholder farming systems, is vulnerable and must adapt in the face of climate change. To this end, shaded agroforestry systems are a promising strategy. Background and Objectives: Understanding local contexts is a prerequisite for designing locally tailored systems; this can be achieved by utilizing farmers’ knowledge. Our objective is to explore ecosystem services (ESs) provided by different shade tree species as perceived by farmers and possible factors (elevation, gender, and membership in local farmers groups) influencing these perceptions. We related these factors, as well as farmers’ ESs preferences, to planting densities of tree species. Materials and Methods: During interviews with 263 small-scale coffee farmers on the southern slope of Mt. Kilimanjaro, they ranked the most common shade tree species according to perceived provision of the locally most important ESs for coffee farmers. We asked them to estimate t...
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Understanding animal personalities has notable implications in the ecology and evolution of animal behavior, but personality studies can also be useful in optimizing animal management, with the aim of improving health and well-being, and... more
Understanding animal personalities has notable implications in the ecology and evolution of animal behavior, but personality studies can also be useful in optimizing animal management, with the aim of improving health and well-being, and optimizing reproductive success, a fundamental factor in the species threatened with extinction. Modern zoos are increasingly being structured with enclosures that host different species, which permanently share spaces. This condition has undeniable positive aspects, but, in some species, it could determine the appearance of collective or synchronized behaviors. The aim of this study was to verify, in a colony of three species of communally housed penguins (Pygoscelis papua, Aptenodytes patagonicus and Eudyptes moseleyi), through a trait-rating assessment, if interspecific group life impacts on the expression of personality traits, and if it is possible to highlight specie-specific expression of personality traits, despite the influence of forced co...
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Community genetic studies generally ignore the plasticity of the functional traits through which the effect is passed from individuals to the associated community. However, the ability of organisms to be phenotypically plastic allows them... more
Community genetic studies generally ignore the plasticity of the functional traits through which the effect is passed from individuals to the associated community. However, the ability of organisms to be phenotypically plastic allows them to rapidly adapt to changing environments and plasticity is commonly observed across all taxa. Owing to the fitness benefits of phenotypic plasticity, evolutionary biologists are interested in its genetic basis, which could explain how phenotypic plasticity is involved in the evolution of species interactions. Two current ideas exist: (i) phenotypic plasticity is caused by environmentally sensitive loci associated with a phenotype; (ii) phenotypic plasticity is caused by regulatory genes that simply influence the plasticity of a phenotype. Here, we designed a quantitative trait loci (QTL) mapping experiment to locate QTL on the barley genome associated with barley performance when the environment varies in the presence of aphids, and the compositio...
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Environmental degradation has the potential to alter key mutualisms that underline the structure and function of ecological communities. While it is well recognized that the global loss of coral reefs alters fish communities, the effects... more
Environmental degradation has the potential to alter key mutualisms that underline the structure and function of ecological communities. While it is well recognized that the global loss of coral reefs alters fish communities, the effects of habitat degradation on microbial communities associated with fishes remain largely unknown despite their fundamental roles in host nutrition and immunity. Using a gradient of reef degradation, we show that the gut microbiome of a facultative, coral-feeding butterflyfish (Chaetodon capistratus) is significantly more variable among individuals at degraded reefs with very low live coral cover (~0%) than reefs with higher coral cover (~30%), mirroring a known pattern of microbial imbalance observed in immunodeficient humans and other stressed or diseased animals. We demonstrate that fish gut microbiomes on severely degraded reefs have a lower abundance of Endozoicomonas and a higher diversity of anaerobic fermentative bacteria, which suggests a broad...
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Research Highlights: Global coffee production, especially in smallholder farming systems, is vulnerable and must adapt in the face of climate change. To this end, shaded agroforestry systems are a promising strategy. Background and... more
Research Highlights: Global coffee production, especially in smallholder farming systems, is vulnerable and must adapt in the face of climate change. To this end, shaded agroforestry systems are a promising strategy. Background and Objectives: Understanding local contexts is a prerequisite for designing locally tailored systems; this can be achieved by utilizing farmers’ knowledge. Our objective is to explore ecosystem services (ESs) provided by different shade tree species as perceived by farmers and possible factors (elevation, gender, and membership in local farmers groups) influencing these perceptions. We related these factors, as well as farmers’ ESs preferences, to planting densities of tree species. Materials and Methods: During interviews with 263 small-scale coffee farmers on the southern slope of Mt. Kilimanjaro, they ranked the most common shade tree species according to perceived provision of the locally most important ESs for coffee farmers. We asked them to estimate t...
Many species are expanding beyond their distributional range margins in response to a warming planet. Due to marginal environmental conditions and novel selection pressures, range margins may foster unique genetic adaptations that can... more
Many species are expanding beyond their distributional range margins in response to a warming planet. Due to marginal environmental conditions and novel selection pressures, range margins may foster unique genetic adaptations that can better enable species to thrive under the extreme climatic conditions at and beyond their current distributional limits. Neotropical black mangrove (Avicennia germinans) is expanding poleward into temperate salt marsh along Atlantic Florida, USA, with field evidence of adaptive trait shifts within range-margin A. germinans populations. However, whether these adaptive shifts have a genetic basis remains to be answered. We monitored twenty A. germinans maternal cohorts from areas in both the Atlantic Florida range core and margin in a greenhouse common garden with annual temperatures analogous to range-margin conditions. We measured variation in a series of phenotypic traits starting at initial planting of field-collected propagules and continuing until ...
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Amongst the global decline of coral reefs, hope spots such as Cordelia Bank in Honduras, have been identified. This site contains dense, remnant thickets of the endangered species Acropora cervicornis, which local managers and... more
Amongst the global decline of coral reefs, hope spots such as Cordelia Bank in Honduras, have been identified. This site contains dense, remnant thickets of the endangered species Acropora cervicornis, which local managers and conservation organizations view as a potential source population for coral restoration projects. The aim of this study was to determine the genetic diversity of colonies across three banks within the protected area. We identified low genetic diversity (FST = 0.02) across the three banks, and genetic similarity of colonies ranged from 91.3 to 95.8% between the banks. Clonality rates were approximately 30% across the three banks, however, each genotype identified was unique to each bank. Despite the low genetic diversity, subtle genetic differences within and among banks were demonstrated, and these dense thickets were shown not to be comprised of a single or a few genotypes. The presence of multiple genotypes suggests A. cervicornis colonies from these banks co...
Etorphine-azaperone immobilisation was evaluated for translocation of Masai giraffes. Nine giraffes were darted with 0.012 ± 0.001 mg/kg etorphine and 0.07 ± 0.01 mg/kg azaperone. Once ataxic, giraffes were roped for recumbency and... more
Etorphine-azaperone immobilisation was evaluated for translocation of Masai giraffes. Nine giraffes were darted with 0.012 ± 0.001 mg/kg etorphine and 0.07 ± 0.01 mg/kg azaperone. Once ataxic, giraffes were roped for recumbency and restrained manually. Naltrexone (3 mg/mg etorphine) was immediately given intravenously to reverse etorphine-related side effects. Protocol evaluation included physiological monitoring, blood-gas analyses, anaesthetic times, and quality scores (1 = excellent, 4 = poor). Sedation onset and recumbency were achieved in 2.6 ± 0.8 and 5.6 ± 1.4 min. Cardio-respiratory function (HR = 70 ± 16, RR = 32 ± 8, MAP = 132 ± 16) and temperature (37.8 ± 0.5) were stable. Arterial gas analysis showed hypoxaemia in some individuals (PaO2 = 67 ± 8 mmHg) and metabolic acidosis (pH = 7.23 ± 0.05, PaCO2 = 34 ± 4 mmHg, HCO3− = 12.9 ± 1.2 mmol/l). Minor startle response occurred, while higher induction-induced excitement correlated to longer inductions, worse restraint, and dec...
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The spiny lobster Panulirus argus supports one of the most economically important commercial fisheries in the Caribbean, yet its sustainable management is problematic due to uncertainty regarding levels of population connectivity among... more
The spiny lobster Panulirus argus supports one of the most economically important commercial fisheries in the Caribbean, yet its sustainable management is problematic due to uncertainty regarding levels of population connectivity among Caribbean nations. We developed two microsatellite multiplex panels for P. argus to assist in future conservation genetics research studies of this important Caribbean species. Significant deviations from Hardy–Weinberg equilibrium were observed at locus Par7 in multiplex 1 and loci Fwc08 and Fwc17 in multiplex 2. No evidence of linkage disequilibrium was observed. All 12 loci were used in both microsatellite multiplexes were polymorphic, with an average of 12 alleles per locus (ranging from 3 to 29 alleles per locus) and HO ranging from 0.368 to 0.921. These two microsatellite multiplexes will be a valuable resource for ongoing and future studies of conservation genetics in the Caribbean spiny lobster, Panulirus argus.
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Studying personality in captive animals may enable the development of individual-based management decisions, which may improve animal welfare. Asiatic lions at London Zoo represent an opportunity to research an understudied species'... more
Studying personality in captive animals may enable the development of individual-based management decisions, which may improve animal welfare. Asiatic lions at London Zoo represent an opportunity to research an understudied species' response to new environments since they have experienced social and physical changes, such as new enclosures and increased social interaction with humans. This project aimed to investigate the role of personality in behavioral responses to these changes. Lion personality questionnaires completed by keepers and direct focal animal observations were used to create personality profiles. Time budgets and enclosure use were determined and compared between control nights and event nights and between the lions' previous enclosure and their new one. The results showed a lack of difference in time budget and enclosure use between control and social event nights, and the spread of participation index values revealed that the lions use their enclosures unev...
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Three brown bear (Ursusarctosarctos) individuals and two sloth bear (Melursusursinusinornatus) individuals were observed in captivity to produce behavioural profiles for each individual. Data collected through behavioural observations... more
Three brown bear (Ursusarctosarctos) individuals and two sloth bear (Melursusursinusinornatus) individuals were observed in captivity to produce behavioural profiles for each individual. Data collected through behavioural observations were used to produce activity budgets, and to identify space usage and certain aspects of social behavior. Behaviour monitoring allowed the researchers to evaluate the welfare of the animals by identifying the occurrence of stereotypic behaviours, which are sometimes associated with stress. Behavioural profiles were created using data obtained through behavioural observations (coding) and keeper questionnaires (rating). The behavioural observations indicated a number of stereotypic behaviours in sloth bears but not in brown bears. The uniformity of zone usage was calculated to investigate if the enclosure size and features were adequate for use, and a social aspect of otherwise solitary animals was also identified. The behavioural profiles generated th...
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Despite a recent surge in the popularity of animal personality studies and their wide-ranging associations with various aspects of behavioural ecology, our understanding of the development of personality over ontogeny remains poorly... more
Despite a recent surge in the popularity of animal personality studies and their wide-ranging associations with various aspects of behavioural ecology, our understanding of the development of personality over ontogeny remains poorly understood. Stability over time is a central tenet of personality; ecological pressures experienced by an individual at different life stages may, however, vary considerably, which may have a significant effect on behavioural traits. Invertebrates often go through numerous discrete developmental stages and therefore provide a useful model for such research. Here we test for both differential consistency and age effects upon behavioural traits in the gregarious cockroach Diploptera punctata by testing the same behavioural traits in both juveniles and adults. In our sample, we find consistency in boldness, exploration and sociality within adults whilst only boldness was consistent in juveniles. Both boldness and exploration measures, representative of risk...
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... I greatly appreciated the support and criticisms of colleagues, friends and teachers, especially Bobbi Brown, Margaret Cooke, Nancy Ennis, Luc-Alain Giraldeau, Gaby Grad, Sharon Harney, Suzanne Plante, and Jennifer Templeton. ...
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Phenotypic manipulation (or phenotypic engineering) that alters trait distributions provides a way to increase the statistical power of detecting relationships between traits and fitness. Manipulations relying on plastic responses,... more
Phenotypic manipulation (or phenotypic engineering) that alters trait distributions provides a way to increase the statistical power of detecting relationships between traits and fitness. Manipulations relying on plastic responses, however, assume a specific relationship between the perturbation and the alteration of the traits when multiple traits are involved. We measured several traits, including condition measured as fluctuating asymmetry, in the ladybird beetle Harmonia axyridis under six different diets to examine how altered environments affected multiple traits and their distributions. Although diet affected fluctuating asymmetry, we found no consistent relationship between degree of asymmetry and other phenotypic measures. As expected, individual traits were altered by our treatments. Contrary to expectation, relationships among traits were not constant among diets. Our results suggest that assumptions about the relationship between condition and trait values, especially fluctuating asymmetry, cannot be made. Further, studies that use manipulated phenotypes to statistically determine the form of selection must first demonstrate that the pattern of the phenotypic correlation matrix is not itself altered by the manipulation. If the phenotypic correlation matrix is not constant, then experimental estimates of selection coefficients may not reflect selection that occurs in the wild.
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Phenotypic manipulation (or phenotypic engineering) that alters trait distributions provides a way to increase the statistical power of detecting relationships between traits and fitness. Manipulations relying on plastic responses,... more
Phenotypic manipulation (or phenotypic engineering) that alters trait distributions provides a way to increase the statistical power of detecting relationships between traits and fitness. Manipulations relying on plastic responses, however, assume a specific relationship between the perturbation and the alteration of the traits when multiple traits are involved. We measured several traits, including condition measured as fluctuating asymmetry, in the ladybird beetle Harmonia axyridis under six different diets to examine how altered environments affected multiple traits and their distributions. Although diet affected fluctuating asymmetry, we found no consistent relationship between degree of asymmetry and other phenotypic measures. As expected, individual traits were altered by our treatments. Contrary to expectation, relationships among traits were not constant among diets. Our results suggest that assumptions about the relationship between condition and trait values, especially fluctuating asymmetry, cannot be made. Further, studies that use manipulated phenotypes to statistically determine the form of selection must first demonstrate that the pattern of the phenotypic correlation matrix is not itself altered by the manipulation. If the phenotypic correlation matrix is not constant, then experimental estimates of selection coefficients may not reflect selection that occurs in the wild.
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Page 1. TECHNICAL NOTE Isolation and characterization of eight polymorphic microsatellite loci for the critically endangered Arenaria nevadensis (Caryophyllaceae) Inmaculada López-Flores Æ Vıctor N. Suárez-Santiago Æ ...
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Genetic tools can have a key role in informing conservation management of declining populations. Genetic diversity is an important determinant of population fitness and resilience, and can require careful management to ensure sufficient... more
Genetic tools can have a key role in informing conservation management of declining populations. Genetic diversity is an important determinant of population fitness and resilience, and can require careful management to ensure sufficient variation is present. In addition, population genetics data reveal patterns of connectivity and gene flow between locations, enabling mangers to predict recovery and resilience, identify areas of local adaptation, and generate restoration plans. Here, we demonstrate a conservation genetics approach to inform restoration and management of the loggerhead sponge (Spheciospongia vesparium) in the Florida Keys, USA. This species is a dominant, habitat-forming component of marine ecosystems in the Caribbean region, but in Florida has suffered numerous mass mortality events. We developed microsatellite markers and used them to genotype sponges from 14 locations in Florida and a site each in The Bahamas, Belize and Barbuda. We found that genetic diversity le...