Molecular Mechanics For Coordination Complexes: The Impact of Adding D-Electron Stabilization Energies
Molecular Mechanics For Coordination Complexes: The Impact of Adding D-Electron Stabilization Energies
Molecular Mechanics For Coordination Complexes: The Impact of Adding D-Electron Stabilization Energies
1995,117, 8407-8415
8407
Abstract: An electronic energy term for transition metals has been constructed for extending Molecular Mechanics
(MM) to open-shell, Wemer-type coordination compounds. The d-orbital energies from a generalized ligand field
calculation are used to compute the Cellular Ligand Field Stabilization Energy (CLFSE). The CLFSE models the
geometrical effects of the stereochemical activity of d electrons and can be computed for any coordination number,
molecular symmetry, and ligand type. In conjunction with ligand-ligand nonbonding and metal-ligand bond stretch
terms, CLFSEs provide a general framework for incorporating transition metals into MM. An explicit angle-bend
term is not required. After describing the theoretical basis of CLFSEs, the method is illustrated using a range of
six-coordinate high-spin and four-coordinate low-spin Ni amine complexes plus four-, five- and six-coordinate Cutl
amine systems. For the nickel complexes, the spin-state change is modeled simply by changing the d-orbital
occupancies. A single set of force field and CLF parameters simultaneously reproduces the metal coordination for
all ten nickel complexes with overall root-mean-square errors of 0.010 8, in Ni-N bond lengths and 0.621 in
N-Ni-N angles. For the copper compounds, the (slightly modified) force field automatically models the JahnTeller distorted structures of six-coordinate species, the planar coordination in the four-coordinate compounds, and
the distorted geometries of five-coordinate systems. The root-mean-square errors in bond lengths and angles for all
15 Cu molecules are higher (0.024 8, and 0.897, respectively) due to the inherent variability of the structural data.
Copper complexes, especially pentacoordinate ones, are intrinsically flexible or plastic which, with the added
influence of the Jahn-Teller effect, can result in large geometrical changes from relatively, minor crystal packing
effects.
Introduction
Molecular Mechanics (MM) is a popular method for modeling
molecular structure and conformational energies with wellparametrized force fields available for treating many essentially
organic problems in chemistry and
However, the extension of MM to inorganic chemistry and especially
to Transition-Metal (TM) systems presents geater ~hallenges.7-I~
One of the main difficulties with conventional MM treatments
of metal systems is the treatment of high coordination numb e r ~ ~and
. ~the definition of valence angle-bend terms. For
example, cis and trans L-M-L combinations in octahedral
symmetry must be handled differently. Many workers have now
overcome this so-called unique labeling problem. A particularly elegant solution is based on spherical coordinate^.^
Present address:
Burton et al.
Theoretical Basis
The general form for the extended CLFSENM strain energy, &,,
is
Hence, the CLFSE/MM model requires three terms for the metal
part of the force field: (i) the CLFSE, (ii) M-L Morse functions for
bond stretching, E,,, (eq l), and (iii) atomic nonbonding terms, ,Evdw,
for ligand-ligand interactions (eq 2). The remainder of the molecule
is treated in a conventional way. The bending and torsional terms
employ the normal harmonic and cosine functions respectively with
certain parameters involving the metal atom set to zero (see Table 4
for a full listing of the FF). Apart from the 1,3 ligand-ligand terms,
Van der Waals interactions are only considered for atom pairs separated
by more than three bonds. In common with other ~ o r k e r s , ~ , ~ J ~ - ~ ~ , * ~
we have not yet included electrostatic interactions in the model.
A hybrid CLFSEJMM program package DOMMINO (D-Orbitals
in Molecular Mechanics of INOrganics) has been developed by adding
routines for computing the CLFSE and its derivatives to in-house MM
software.23 The modifications to the total energy and derivative
calculations are straightforward since the CLFSE part is virtually selfcontained. A simple interface to the SYBYL molecular modeling
(21) Gillesuie. R. J. J . Chem. Educ. 1970. 47. 18-23
(22) Kepe;, D. L. Comprehensive Coordination Chemistry: Pergamon
Press: Oxford, 1987; Vol. 1.
(23) In-house MM software was supplied by Dr. D. J. Osguthorpe,
Molecular Graphics Unit, University of Bath.
18
2.2
24
26
28
VLF is the ligand field potential between d orbitals i and j and the
Figure 2. Graph showing the relationship between e, values for NiN(amine) bonds calculated using eq 6 (solid line) and empirically
observed values from ref 21 (triangles).
is therefore a strictly one-electron term with d-orbital energies that are
automatically barycentered. Different d configurations and spin states
can then be simulated simply by changing the d-orbital occupancies.
Implicit in such a treatment is the assumption that the spin state and d
configuration are well-defined. These restrictions presumably preclude
application of CLFSEs to organometallic systems although. fonunately,
it appears that such species are amenable to more conventional MM
approaches?
The diagonalization of VW precludes any simple analytical expression
for the CLFSE and its derivative. This represents the major difference
between our approach and conventional MM. However. our experience
to date indicates that numerical finite-difference derivatives are
adequate. It is then straightforward to insert the CLFSE code into the
MM program at the points where derivatives and total strain energies
are computed. The CLFSEJMM method described here is thus a
complete generalization of the simple formulas derived by Deeth and
Hitchmanls for treating tetragonal geometries in dP and dn species.
For many systems, the diagonalization will not exact an undue
penalty in computation time. The CLFSE contribution is not evaluated
for a11 atomic displacements. only those relevant to the M-L caordination. In a large metallwnzyme with only a few metal centers. for
example, the calculation would only be slightly slower than for a
comparable "all-organic'' system.
The CLFSE requires an expression relating the M-L bond length
io the CLF parameter value. Both simple theory and experiment suggest
for octahedral complexes that the ligand field splitting parameter lODq
or Am?should have an approximately I/$
dependence on the metalligand bond distance, r.1s.26 For simple 0-bonding-only ligands like
amines, & = 3e, implying that the CLF parameter should also display
a l/r5dependence.
For the particular case of high-spin Ni" complexes, however, it has
been shown" that e, varies linearly with Ni-N distance at least over
the range of about 2.0 to 2.3
Accordingly, the expression for e,, as
a function of Ni-N bond length, r. is
A.
e, = 21629 - 8235r
(6)
as:
(5)
Here. e(d,) are the d-orbital occupations (normally 0. I , or 2). Note
that we adopt a one-electron Ilsmrm,) coupling scheme as employed
in Master Equation M.2 of ref 25 (p 371) rather than the more general
many-electron ILSJM,) scheme of Master Equation M.3. The CLFSE
(24) The SYBYL Molecular Modelling package. Version 6. I. is available
fmm TRlPOS Associates: 1699 South Hanley Road. Suite 303. SI. Louis.
Missouri 63144.
(25) Gerloch. M. Mognnirm ond Ligand Field A m l w i . ~ :Cambridge
Uniterrity Press: New York. 1983.
The fit between empirical e,, values and this straight line is shown
in Figure 2.
Having chosen a functional form for e,. the remaining parameters
ofthe M-N bond stretch were determined by fitting the Morse function
plus CLFSE for a hypothetical Ni-N diatomic to the harmonic
functions reported for high- and low-spin Ni"-N? For a hypothetical
octahedral high-spin d" NiNh complex, the CLFSE is -6/5Am or - I S /
Se., while for a hypothetical low-spin d" NiN. system it is -22/5e,.
Dividing through by six and four respectively. the relevant CLFSEs
for high- and low-spin diatomic systems are - 0 . 6 ~and - 1 . 1 ~ . A
process of trial and error then established the remaining Morse function
(26) Dceth. R. 1.: Gerloch. M. Inorz. Chem. 1984. 23. 3846-3853.
(27) Deeth. R. J.: Gerlach. M. Inorg. Chem. 1987. 26. 2582-2585.
Burton et al.
20 1
3 1
x
-1004
1.6
1.8
:
2
2.2
2.4
bond IengLh, r (A)
+ DOMMINO
(Sd)
- Morse function
+ DOMMlNO (%I)
-Morse function
:
2.6
:
2.8
I
3
Hancock (S=O)
CLFSE
Hancock (S=l)
CLFSE
Table 1. Chemical Formulas, Full Ligand Names, Coordination Numbers, and Cambridge Structural Database Reference Codes for the
Molecules Shown in Figure 1
formula
no.
coord no.
I
I1
I11
IV
V
VI
VI1
VI11
IX
6
6
6
6
6
6
4
4
4
X
XI
XI1
XI11
XIV
4
6
6
6
6
6
XVI
XVII
XVIII
XIX
5
5
5
xv
XXI
XXII
XXIII
XXIV
xxv
CSD refcode
ethylenediamine
1,3-diaminopropane
diethylenetriamine
bis( 3-aminopropy1)amine
1,4,7-triazacyclononane
ethylenediamine
tetra-N-methylcyclam
1,4,8,11[7R(S),14S(R)]-5,5,7,12,12,13-hexamethyItetraazacyclotetradecane
ENIACH
DAMPNI
AEAMNI 10
AMPRNI 10
BAZNNI
EANBAGOl
DITMUO
MAZNIA
1,4,7,10-tetraazabicyc10[8.2.2]tetradecane
GALZUO
ethylenediamine
1,4,7-triazacycIononane
diethylenetriamine
triaminocyclohexane
CUENCL
DUSJACOl
ETACUB
TACCUP
LATSII
JIBZUP
TENCUB
CEDHAU
DAPRCU
DMEDCU
CMENOX
ETEACU
CEFBEU
CHXCUA
2,5,8,11,14-~entaazapentadecane
1,4-bis(3-aminopropyl)-1,4,7-triazacyclononane
N,N-bis(2-aminoethyl)diethylenetriamine
ethylenediamine
1.3-diaminopropane
(dimethy1amino)ethyl)amine
N-methylethylenediamine
N-ethylethylenediamine
4
4
4
4
4
4
4
xx
ligand name
N,N-diethylethylenediamine
1,3-diaminocyclohexane
VI
XI\'
XI1
xv
XVII
XVI
xx
x IX
El
El
XXIll
XVlIl
Me
tvk
ML
I
XXI
El
XXIV
XXV
ref
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
46
44
45
47
48
49
50
51
52
53
(A)
average
N-Ni-N(')
average
Ni-Ni-N
a
(")
[Ni(en)3J2+(11)
calc
obs30 Han
[Ni(tn)3J2+(111)
calc
obs3'
Han
2.12
2.13
2.12
2.13
2.12
2.14
2.15
90.0
180.0
90.0"
180.P
81.8
173.1
81.9
171.8
84.3
83.8
173.1
86.9
175.8
[Ni(tcn)?l2+(VI)
Ni-N(A)
Burton et al.
[Ni(en)2J2+(VII)
[Ni(dien)?Jzf(IV)
calc
obs32 Han
[Ni(dptn)zI*+(V)
calc
Han
2.15
2.05
2.15
2.06
2.16
2.05
2.16
2.15
2.11
2.23
2.15
2.20
2.11
85.1
81.7
168.0
81.6
167.3
82.9
91.6
177.4
90.4
176.4
91.2
[Ni(tmc)J*+(VIII)
[Ni(meso14ane)12+(IX)
calc
obs34 Han
calc
obs35
Han
calc
obs36
Han
2.11
2.11
2.09
1.94
1.92
1.92
1.99
1.98
1.97
80.7
177.8
82.6
177.1
82.6
87.6
179.7
86.4
180.0
88.5
180.0
90.3
167.4
90.6
168.6
86.4
90.0
166.0 180.0
calc
1.98
obs3'
Han
[Ni(B-l2-aneN4)l2+(X)
calc
obs38
1.96
1.85
1.87
90.0
180.0
89.7
169.8
89.7
169.1
Han
1.86
The experimental values were quoted as average values for the specific bond angles.
2.45
CuN(ax)
Tr
N '
with the equatorial and apical distances of 2.01 and 2.48 8, for
SQP symmetry. The energies are very similar (the C4" system
is 2 kcaUmol lower in energy). Experimentally, five-coordinate
Cu" frequently display intermediate and variable structures as
shown by the [Cu(2,2'-bipyridyl)2XIn+ complexes where Hathaway has mapped out a series of structures from near trigonal
bipyramidal through to near square pyramidal.56
Thus, unless the calculations explicitly include the effects of
the surrounding lattice, one cannot expect to get exact agreement
with the solid state structure of five-coordinate CUI]complexes
unless the crystal does not alter the structure from what would
be observed in the vacuum phase. Unfortunately, experimental
gas phase structures of these cationic copper complexes are not
available. One could attempt to verify the CLFSE/MM results
( 5 6 ) Hamson, W. D.; Kennedy, D. M.;Power, M.; Sheahan, R.;
Hathaway, B. J. J . Chem. SOC., Dalton Trans. 1981, 1557-1564.
Table 3. Observed and Calculated Bond Lengths (A) and Angles (") Describing the Cu Coordination Environment"
[Cu(NH&I2+(XI)
calc
ob99
[Cu(en)3l2+(XII)
calc
obs40
[Cu(tcn)21z+(XIII)
calc
obs41
Cu-N (A)
2.48
2.04
2.45'
2.15'
2.44
2.44
2.09
2.08
2.03
2.03
2.49
2.33
2.1 1
2.09
2.06
1.91
2.36
2.35
2.12
2.10
2.02
2.01
2.34
2.30
2.08
2.06
2.05
2.05
2.45
2.42
2.04
2.07
2.14
1.98
2.46
2.35
2.13
2.07
2.04
2.03
2.29
2.01
2.35
2.07
average
90.0
179.9
90.W
180.0d
79.1
169.7
80.7
168.9
79.2
177.7
81.3
178.2
80.0
165.3
80.6
166.1
85.2
87.0
N-CU-N (")
[Cu(papd)12+(XVU
CU-N
(A)
N-CU-N (")
average
CU-N
(A)
average
N-CU-N
(")
calc
2.41
2.16
1.97
2.01
2.02
78.6
112.7
109.1
101.7
85.7
170.5
98.9
86.1
145.5
85.3
[Cu(dien)2I2+(XIV)
o
calc
[Cu(apt)I2+(XVII)
[Cu(tach)2I2+(XV)b
s
~ calc
~
OW
[Cu(adt)12+(XVIII)
calc
obs"
calc
2.16
2.09
2.01
2.03
2.02
2.33
1.96
2.10
2.03
2.05
2.25
2.03
2.08
2.06
2.03
2.04
2.14
2.47
2.02
1.97
2.04
2.09
2.09
2.01
2.01
84.9
111.8
104.9
108.0
85.1
167.8
99.6
84.5
140.2
84.4
80.5
94.1
102.3
77.9
89.9
171.9
86.2
174.7
92.7
91.7
84.0
105.3
101.6
81.5
90.3
173.2
86.3
172.9
87.8
94.9
110.0
75.6
101.4
112.4
84.3
143.1
99.1
85.4
169.2
85.8
113.1
83.2
116.7
105.0
86.1
128.2
96.3
86.4
169.6
84.1
[Cu(dmed)?]?+
(XXI)
[Cu(med)2l2+
(XXII)
01~45
[Cu(nen)2I2+
[Cu(deen)212+
[Cu(chn)2I2+
(XXIII)
(XXIV)
(XXV)
[Cu(en)2I2+
[Cu(tn)2lZ+
(XIX)
calc
obs4'
(XX)
calc
cak
obs5I
2.02
2.02
2.00
2.04
2.04
2.06
2.01
2.04
2.01
2.06
2.02
2.03
2.01
2.03
2.02
2.10
2.01
2.08
2.00
2.02
85.4
180.0
84.1
180.0
84.8
180.0
86.7
180.0
$6.7
177.3
85.3
180.0
86.3
180.0
85.9
180.0
86.2
180.0
85.0
180.0
85.2
180.0
84.9
180.0
85.5
180.0
87.6
180.0
s calc
~ ~ o
s calc
~ ~
cak
s cak
~ ~o
For [Cu(tach)2I2+a full set of experimental data was not available for the purpose of comparison with calculated values. The experimental
data for this value was auoted with an error of h0.28. The exDerimenta1 data quoted was an average value only. e The experimental data for this
value was quoted with an error of 10.08.
further either by computing gas phase structures using ab initio
theory or by extending the model to include the crystal lattice
effects. Both of these avenues are being explored.
Apart from the "plasticity" of d9 Cu species, six-coordinate
copper complexes are also subject to the Jahn-Teller effect.
Hence, not only can quite different structures be observed for
essentially the same complex due to plasticity, apparent multiple
structures can also result from static or dynamic Jahn-Teller
effects where the molecule may occupy more than one minimum
on the warped Mexican Hat potential energy ~urface.~'Again,
these features are sensitive to crystal packing. [Cu(tach)2I2+
(XV) with C104- counteranions yields a typical elongated
geometry (Cu-N,, = 2.353 A, Cu-Ne, = 2.071 i442)while
the nitrate salt has virtually equal Cu-N contacts (Cu-N,, =
2.173 A, Cu-Ne, = 2.164 A42). However, the latter structure
is, of course, an artefact of the X-ray diffraction experiment
since the d-d spectra of both salts are essentially identical. The
"intrinsic" structure of CUN6 species is a tetragonally elongated
octahedron and therefore the solid state structures with the
largest tetragonal distortion are used for any comparisons with
CLFSEMM results (see Table 1).
Four-coordinate d9 species are at the limit of a tetragonal
elongation and are therefore less plastic. This makes them the
simplest Cu" systems to model as shown by the number of
previous MM applications. However, crystal packing can still
(57) Reinen, D.; Friebel, C. Srrucr. Bond. 1979, 37, 1-80.
Burron er a/.
a=876'
bi934-
bond stretch:
Bond S I W I C ~
Ni-N
80.0
80.0
72.0
CU-N
N-C
93.0
88.0
108.6
0.91 2.50
1.50 1.92
0.97 1.60
Torsion
K(kcnl\
.
. ~
Ni-N-C-C
Ni-N-C-H
F
.
n
..
0.ooO
O.Oo0
0.0
0.0
O.O(KI 0.0
0.ooO 0.0
0.474 3.0
1.423 3.0
CU-N-C-c
Cu-N-C-H
H-C-C-C
H-C-C-H
0.0
0.0
0.0
0.0
K(kcnl\
.
. ~
H-C-N-H
F
.
n
..
1.423
1.423
0.474
0.474
0.474
0.474
3.0 -1.0
3.0
1.0
3.0
1.0
3.0
1.0
3.0
1.0
3.0
1.0
B(")
64.786
64.786
64.786
51.815
47.497
109.492
110.492
109.492
109.378
108.977
H-C-C-N
C-C-C-N
C-N-C-C
1.0 C-N-C-H
1.0 N-C-C-N
Angle Bend
k. (kcal)
N-Ni-N
0 ("1
N-CU-N
0.ooO
47.497
64.786
28.786
H-N-H
N-C-H
C-N-C
0.ooO
O.Oo0
0.m
108.977
109.492
109.492
ko(kcal)
C-C-C
N-C-C
H-N-C
H-C-C
H-C-H
Ni
CU
H
0.0
0.0
654.295
0.0
0.0
41.085
10155.9
14539.0
326.517
397.436
Conclusions
The Cellular Ligand Field Stabilization Energy provides a
method for treating the important geometrical effects associated
with the electronic energies of an incomplete d shell. In
conjunction with bond-stretch and ligand-ligand nonbonding
terms, the CLFSE provides a general framework for explicitly
incorporating open-shell transition metals into a conventional
molecular mechanics treatment for Werner-type complexes. The
absence of an L-M-L angle-bend term facilitates a uniform
treatment of wider ranges of coordination numbers.
The CLFSE term can be designed to mimic existing molecular
mechanics force fields. However, the same CLFSWMM force
field is also able to reproduce simultaneously the quite different
structures and Ni-N distances of octahedral high-spin and
planar low-spin dXNi amine complexes simply by altering the
d-orbital occupations to reflect the desired spin state. The
uniform treatment of both high- and low-spin systems opens
the possibility for following certain types of spin crossover.
With only minor modifications, the CLFSWMM FF provides
a good treatment of four.. five-. and six-coordinate d9 Cu amine
complexes including planar CuN4 systems and the auromaric
generation of tetragonally elongated CuN6 centers. The JahnTeller effect is implicit in the CLFSE and requires no external
constraints. This represents a significant first in molecular
modeling of d9 complexes. For pentacoordinate systems, the
CLFSE favors a square-pyramidal geometry whereas two of the
three complexes available are better described as trigonal
bipyramidal. However. the apparently poorer treatment of fivecoordinate complexes reflects the high flexibility or "plasticity"
(59) See discussion in: Bunon. V.I.: Deeth.
Commun. 1995. 573-574.