Biology Notes
Biology Notes
Biology Notes
role of atp in energy coupling and transfer ADP INTO ATP, THIS PROCESS IS CALLED
ANABOLISM.
ATP (ADENINE TRI-PHOSPHATE)
WE USE THE RESULTING ATP INTO OUR DAILY
LIVES TO LIVE AND BE ALIVE, RESULTING TO
ADP. THIS PROCESS IS CALLED CATABOLISM.
CATABOLISM: ATP----ADP/ breakdown
ANABOLISM: ADP-----ATP/synthesis
Note:
CELLS NEED ENERGY TO FUNCTION, THE
WHEN USED, IT HYDROLIZES (undergo chemical
breakdown due to reaction with water.) ENERGY RELEASED BY THE PROCESS OF
LOSING ONE 1 PHOSPHORUS RESULTING REMOVING THE 3RD PHOSPHORUS FROM ATP,
INTO ADP (ADENINE DI-PHOSPHATE) CAN ALLOW THE CELLS TO DO ITS JOB.
ADP
TRI- 3 PHOSPHATE
DI – 2 PHOSPHATE
ENZYME CONCENTRATION:
TEMPERATURE:
PH:
-UP TO 36 ATP FROM ONE GLUCOSE MOLECULE ACTIVATION ENERGY: ENERGY NEEDED TO
START REACTIONN
LIPIDS:
REACTANTS/SUBSTRATES: MOLECULES IN
- STORES THE MOST ENERGY
WHICH ENZYMES ACTS UPON
- 80% OF ENERGY IN THE BODY
- ABOUT 146 ATP FROM 1 TRIGLYCERIDE ENZYME SUBSTRATE COMPLEX: PART OF
MOLECULE ENZYME, AFTER ENZYME CHANGES SHAPE
SLIGHTLY
PROTEINS:
OPTIMAL: MAXIMUM CAPACITY/ MOST
- BUILDING BLOCKS OF LIFE
EFFECTIVE
- LEAST LIKELY TO BE CONVERTED INTO
ATP DENATURATION: DEAD/ DESTROYED ENZYMES
- AMINO ACIDS USUALLY ARENT NEEDED
NEGATIVE FEEDBACK: INHIBITS ENZYME THAT
FOR ENERGY
CATALYZES REACTION
- 36 ATP IN ONE AMINO ACID
NUCLEIC ACID
KEY FUNCTIONS OF ENZYMES:
- ARE NEVER BROKEN DOWN FOR
ENERGY 1. to copy DNA
ACTIVATION ENERGY -The energy used to break 2. build proteins
the bonds in the reactants so they can be
reformed in the products 3. digest food
KEY TERMS:
VITAMINS
INHIBITORS:
NOTE:
Feedback inhibition:
CO ENZYMES; ORGANIC
Most of the coenzymes are derived from
vitamins. They act as a transient carrier of
groups and transfer these groups in a
biochemical reaction. Examples include:
PHOTOSYNTHESIS:
2 stages of photosynthesis
-needs light
-produces ATP and NADPH
-occurs in the thylakoid
DIVIDED INTO 5 STEPS
PHOTOSYSTEM II
- WORKS WELL WITH 680NM
Photosystems Absorb Light Energy
WAVELENGTH OF LIGHT. WHY IT IS
PHOTOSYSTEMS ARE FOUND INSIDE SOMETIMES CALLED P680
THYLAKOIDS, THEY ARE THE FIRST - GENERATES ATP
STEPS OF PHOTOSYNTHESIS
Glucose will them go through the phloem tissue First it fixes CO2 in the mesophyll cell’s
and go downward to be stored and be used in chloroplasts then move on to calvin cycle in
the chloroplasts of the bundle sheath cells
the future
C4 PATHWAY:
SINCE CARBON FIXATION OCCURS IN During the night the stomata opens to let
ONE CELL AND THE CALVIN CYCLE CO2 inside the plant. Once CO2 enters
OCCURS ON ANOTHER, RuBisCO WILL PEP carboxylase binds it with PEP to create
NOT COME INTO CONTACT WITH OXYLOACETATE or OAA (oxyloacitic acid)
OXYGEN, THEREFORE STOPPING this OOA will then be converted into
MALATE or MALATIC ACID which will be
stored in the vacoule of the plant cell . once
daytime appears the stomata closes and
stage 2 occurs.
PART 2 : DAYTIME
Malatic acid from the vacuole will migrate to
chloroplast to undergo the calvin cycle.
Malatic acid while in there will be turned into
CO2 that RuBisCO can bind to and
pyruvate which will be reduced by ATP into
PEP and return to the stroma. PIGMENT NOTES:
This process is useful as the plant can still Pigments absorbs visible light and converts it
undergo photosynthesis while the stomata into useful energy the plants can use for
is closed. photosynthesis
3 photosynthesis:
Calvin Cycle- also known as C3 pathway Chlorophyll: absorbs R,Y,B light but reflects
because a 3-C molecule, PGA, is the first stable green (meaning: red and blue light are mostly
compound used, THEN GREEN)
C3, C4 and CAM plants
Chlorophyll A: is a primary pigment, has a
C3- to fix carbon from CO2; 95% of plants(e.g.
structure of c55h75o5n4mg consisting of a
cereals, peanuts, tobacco, spinach, sugar
hydrophilic pyrole head.(water loving head) and
beets, soybeans, most trees, some lawn
a hydrophilic phytol tail (water fearing tail)
grasses)
found in the thylakoid membrane. 4 pyrole
C4- happens in mesophyll cells then forms 4C,
heads connect together by methane group to
moves to bundle-sheath cells; 1% of plants
form a pophyrin ring (a large ring molecule
(e.g. crab grass, crop plants such as sugarcane consisting of 4 pyrroles, which are
and corn) smaller rings made from 4 carbons and 1
CAM (crassulacean acid metabolism)- opens nitrogen) side group at ring II is ch3
stomata at night, fix CO2, then fix it again in
the Calvin Cycle during the day; unlike C4, both Phytol definition: a long hydrocarbon
fixation happen in the same cell (pineapple chain that is hydrophobic in nature
and cacti-adapted to dry habitats) C A appears bluish green as it reflects
the green visible light
Bacteriochlorophyll: found in green or also has a bluish green color absorbing 447-
purple colored bacterias has a structure 52 nm
of c55h74o6n4mg absorbs in infrared
CHLOROPHYLL D: found in cynobacterias
region > 720 nm
that can perform photosynthesis it has a
ACCESSORY PIGMENTS: found in the structure of C54H70MgO6N4 it absorbs 710 nm
LHC and is the reason why leaves which is why ir appears red.
changes colors, once principal pigment Cartenoids group: accessory pigments
CHLOROPHYLL A breaks down (due to found in ALL plants. RESPONSIBLE FOR
reasons of change of season, PH of MAKING THE COLOR OF PLANTS IN
water, and many more) it reveals the AUTUMN.
accessory pigments chlorophyll b c d ,
carotenoid pigments (carotene, CAROTENES (BETA CAROTENES): has
xanthrophyll)phycobilins (phycoerythrin, a structure of C40H56. has a max
phycocyanin) and flavonoids absorption of blue-violet region and
(anthocyanin) which is why plants, when reflects yellow-orange region , which is
undergoing changes appear why it appears in the yellow to orange
yellow/orange/reddish etc. spectrum.
CHLOROPHYLL B: FOUND IN PLANTS
AND ALGAE HAS A FORMULA OF C55
H70 O6 N4 Mg, main difference is that it
absorbs 640 to 450 nm, which explains
why it appears olive-green. CHO side
group
Olive green
PHYCOBILINS: only found in algae and cyno
bacterias