2 BioChem

CONTENTS
Page
Introduction
1. Living cells 1
2. Biomolecules 29
3. Enzymes 44
4. Carbohydrates 65
5. Proteins 93
6. Lipids 116
7. Nucleic acids 134

8. Vitamins 147
9. Minerals 173
10. Biochemical techniques 196
11. Practicals 227

INTRODUCTION
Scope of Biochemistry
Biochemistry is a branch of life science which deals with the study
of chemical reactions that occur in living cells and organisms. Life is a
chemical process involving thousands of different reactions occurring
in an organised manner. These are called metabolic reactions.
The term Biochemistry was first introduced by the German Chemist
Carl Neuberg in 1903. It takes into account the studies related to the
nature of the chemical constituents of living matter, their transformations
in biological systems and the energy changes associated with these
transformations. Biochemistry may thus be treated as a discipline in
which biological phenomena are analysed in terms of chemistry. The
branch of Biochemistry for the same reason, has been variously named
as Biological Chemistry or Chemical Biology.
Modern Biochemistry has two branches, descriptive Biochemistry
and dynamic Biochemistry. Descriptive Biochemistry deals with the
qualitative and quantitative characterization of the various cell
components and the dynamic Biochemistry deals with the elucidation
of the nature and the mechanism of the reactions involving these cell
components.
Many newer disciplines have been emerged from Biochemistry
such of Enzymology (study of enzymes), Endocrinology (study of
hormones) Clinical Biochemistry (study of diseases), Molecular
Biochemistry (Study of Biomolecules and their functions). Along with
these branches certain other specialities have also come up such as
Agricultural Biochemistry, Pharmacological Biochemistry etc.
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Those who acquire a sound knowledge of Biochemistry can tackle
the 2 central concerns of the biomedical sciences (1) the understanding
and maintenance of health (2) the understanding and treatment of
diseases.
Objectives of Biochemistry
The major objective of Biochemistry is the complete understanding
of all the chemical processes associated with living cells at the molecular
level. To achieve this objective, biochemists have attempted to isolate
numerous molecules (Bio molecules) found in cells, to determine their
structures and to analyse how they function. Biochemical studies have
illuminated many aspects of disease and the study of certain diseases
have opened up new therapeutic approaches. In brief the objectives
can be listed as follows:
1. Isolation, structural elucidation and the determination of mode of
action of biomolecules.
2. Identification of disease mechanisms.
3. Study of in born errors of metabolism
4. Study of oncogenes in cancer cells
5. The relationship of biochemistry with genetics, physiology,
immunology, pharmacology, toxicology etc.
Biochemistry is related to almost all the life sciences and without
biochemistry background and knowledge, a thorough understanding
of health and well-being is not possible.
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CHAPTER 1
LIVING CELL
1.1 Introduction
The cell is the basic structural and functional unit in all living
organisms. Living forms vary in size but they are all made up of cells. In
unicellular organisms, the cell is the organ. As an organism grow in
complexity, the cells increase in number and similar cells aggregate into
tissues and organs with specialized functions. The shape of the cell is
often determined by its function and the size of the cell is determined
by the optimum dimensions that will enable it to perform its duties more
effectively.
The human body is composed of a multiple of specialized tissues
which inturn consist of vast clusters of cells differentiated into specialised
chemical factories which perform various biochemical reactions.
1.1.1 Types of cells
Two general types are recognised in nature. They are prokaryotic
and eukaryotic cells.
1.1.1.1 Prokaryotic cells
Prokaryotes were the first cells to arise in biological evolution. They
are very small and simple having only a single membrane. The cell
membrane, is usually surrounded by a rigid cell wall.
They are devoid of nucleus and membranous organelles such as
mitochondria and endoplasmic reticulum etc. (Fig. 1.1).
1
1.1.1.2 Eukaryotic cells
Eukaryotic cells are presumably derived from prokaryotes. They
are much larger and much more complex than prokaryotic cells
(Fig. 1.2).
They have nucleus and membrane bound subcellular organelles.
Many of their metabolic reactions are segregated within structural
compartments. The significant differences between prokaryotic and
enkaryotic cells are:
Eukaryotes Prokaryotes
1. Have nucleus with nuclear Do not have nucleus

membrane
2. Have membrane bound Do not have organelles
subcellular organelles such
as mitochondria, endoplasmic
reticulum and golgi complex
3. Have large ribosomes Have small ribosomes
4. Have many chromosomes Have a single chromosome,
which undergo mitosis which consists of a single
and meiosis during cell molecule of double helical
division DNA
5. Reproduce by sexual Reproduce by asexual
division division
6. They are present in fungi, They are found in eubacteria,
protozoa, most algae, the blue green algae, the
higher plants and animals spirochetes and the
mycoplasma
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The eukaryotic cell structure is composed of (i) cell membrane, (ii)
nucleus (iii) mitochondria (iv) endoplasmic reticulum (v) golgi apparatus
(vi) ribosomes (vii) lysosomes and others. These specialised structural
units are called as subcellular organnelles. Biochemistry today is
increasingly concerned with the structure of cells and their organelles.
Fig. 1.2 The structural organisation of eukaryotic cells
3
Fig. 1.1 The structural organisation of prokaryotic cells
1.2 Sub cellular Organelles

1.2.1 Cell Membrane
The cell is enveloped and thus separated from its surroundings by
a thin wall contains a rigid framework of polysaccharide chains
crosslinked with short peptide chains. Its outer surface is coated with
lipopolysaccharide. Cell membrane is also called as plasma membrane
(or) plasma lemma. The pili, not found in all bacteria have extensions
of the cell wall. The cell membrane contains about 45% lipid and 55%
protein. The cell membrane or plasma membrane have an average
thickness of 75 A°. The principal lipids are phospholipids, sphingolipids
and cholesterol. An important feature of these lipids is they are composed
of hydrophobic (water - insoluble) hydrocarbon sections and hydrophilic
(water soluble) units. The latter include charged units (eg. phosphate or
amino groups) and uncharged units (eg. hexose). In water, such
compounds orient themselves in such a way that only the hydrophilic
section is exposed to water. The hydrophobic components of individual
molecules tend to contact with other; this is accomplished either by
arrangement into micelles or by the formation of bilayers.
Two types of poteins are found in cell membrane; viz. intrinsic or
integral and extrinsic or peripheral (Fig. 1.3).Integral proteins are
either partially or totally immersed in the lipid bilayer and difficult to
remove by any means other than the distruption of the membrane with
a detergent. Peripheral proteins are bound only to the surface of
membrane and interact only with the hydrophilic groups and therfore
are readily removed by extraction with an aqueous medium. The
arrangement of lipids and proteins in the memberane is known as fluid
mosaic model.
Fig. 1.3 Structural organisation of a cell membrane (Fluid

mosaic model
Functions of cell membrane
The cell membrane performs a number of important functions
(i) It holds the cell together
(ii) The membrane is a selectively permeable boundary which allows
water, certain required nutrients and metal ions to pass freely
(ii) It secrete waste products
(vi) It keeps out toxic materials
(v) It contain receptors to bind certain regulatory substances such as
hormones which regulate the various metabolic activities.
1.2.3 Cell Wall
Plant and bacterial cell membranes are surrounded by a thick cell
wall.
1.2.3.1 Bacterial cell wall
The bacterial cell is enclosed within a wall that differs chemically
from the cell wall of plants. The cell wall contains a rigid framework of
polysaccharide chain cross linked with short peptide chains and its outer
surface is coated with lipopolysaccharide. The pili, found in some
bacteria are extensions of the cell wall. In some bacteria the cell wall is
surrouned by an additional structure called a capsule.
The cell wall and capsule confer shape and form of the bacteriam
and also act as a physical barrier to the cell membrane. In the absence
of cell wall and capsule is mechanically fragile and the bacteria would
rupture.
1.2.3.2 Plant cell wall
The cell wall is a thick polysaccharide containing structure
immediately surrounding the plasma membrane. In multicelllar plants,
the plasma membrane of neighboring cells are separated by these walls,
and adjacent plant cell have their walls fused together by a layer called
the middle lamella. The cell wall serves both as a protective and a
supportive unit for the plant. The degree to which the cell wall may be
involved in the regulation of the exchange of materials between the
plant cell and its surroundings is difficult to assess but is most likely
restricted to macromolecules of considerable size. As in animal cells,most
of the regulation of exchanges between the cytoplasm and the extracellar
surrounding of plant cells is a function of the plasma membrane.
Functions
The cell wall protects bateria against swelling in hypotonic media.
It is porous and allows most small molecules to pass. Some of the pili
are hollow and serve to transfer DNA from sexual conjugation.
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1.2.4 Nucleus
Nucleus is the heaviest particulate component of the cell. Except
matured mammalian erythrocytes, nucleus is found in almost all cells.
The nucleus about 4-6µm in diameter is surrounded by a perinuclear
envelope. At various position the outer membrane of the envelope fuses
with the inner membrane to form pores. Nuclear pores provide continuity
between the cytosol and the contents of the nucleus (nucleoplasm).
The electron microscope reveals that the nuclear content consist of
granular or fibrillar structures. The nucleolus, a discrete body within
the nucleus, contains ribonucleic acids (RNA). The most important
component of the nucleus is an organised clumps of threadwork known
as chromatin which is distributed throughout the nucleus and contains
most of the cellular deoxy ribonucleic acids (DNA). Immediately before
the cell division the chromatin organises into simple thread like structures
known as chromosomes which will eventually be distributed equally to
each daughter cell.
Fig. 1.4 A schemmatic diagram of Nucleus
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Functions
1. Take part in cell division
2. Contain DNA molecules which are heriditary carriers.
1.2.5 Mitochondria
These are the largest particulate components of the cytoplasm
and represent upto 15% -20% of the dry weight of the cell. They vary
in shape (spherical, filamentous, sausage shaped) and size (0.5 to 3µ
long 0.1 to 0.6µ wide).The number varies with the size and energy
requirements of the cell. For eg. flight muscles in birds contain rich
amount of mitochondria when compared to any other parts of the body.
Electron microscopic studies show that a mitochondrion has two
membranes inner and outer which are separated from each other by 50
to 100oA. The outer and inner membranes differ in lipid composition
and in enzyme content.
Fig. 1.5 A schemmatic diagram of mitochondria
8
The inner membrane is very much folded to form shelf - like
structures of varying width. These shelf - like structures, known as
internal ridgs or cristae, extent into matrix of the mitochondrion structure.
Thus two structurally different space can be distinguished, the intracristae
space and the matrix space (Fig. 1.5). The matrix space is rich in
enzymes. The inner membrane shows the existance of knob like
structures, which are proteins involved in biological oxidations.
Functions : The mitochondria are the ‘power houses’ of the cell, where
carbohydrates, lipids and amino acids are oxidised to CO2 and H2O
by molecular oxygen, and the energy set free is stored in the form of
adenosine triphosphate (ATP). The enzymes involved in this energy
conversion are located in the inner membrane.
1.2.6 Endoplasmic reticulum
The endoplasmic reticulum consist of flattened single membrane
vesicles. These have the same lipid bilayer structure but thinner than
the cell membrane (about 7mm). The endoplasmic reticulum is of two
types; rough (RER) and smooth (SER). Only the rough type has small
granules known as ribosomes (Fig. 1.6).
Fig. 1.6 A schemmatic diagram of endoplasmic reticulum
9
Functions
RER is concerned with protein synthesis while SER is concerned
with lipids and glycoprotein synthesis. The cisternae (enclosed spaces)
of the endoplasmic reticulum play a role in the exchange of material
between the cell and the extra cellular fluid. The exchange of material
takes place by the process of pinocytosis.
1.2.7 Golgi apparatus
Golgi complex is a smooth membrane system consists of flattened,
single membrane vesicles which are often stacked (Fig. 1.7).
Fig. 1.7 A schemmatic diagram of golgi apparatus
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Functions
These are organelles to which the newly synthesized proteins are
transferred and temporarily stored.
Small vesicles arise peripherally by a pinching - off process. Some
become vacuoles in which secretory products are concentrated.
1.2.8 Ribosomes
The outer membrane of the endoplasmic reticulum contain small
granules commonly known as ribosomes, which are the smallest
particulate components of the cytoplasm. They are rich in ribonucleic
acids. Each ribosome has a large and a small subunit with a sedimentation
constant of 50s and 30s respectively (Fig. 1.8). Each subunit contains
about 65% RNA and 35% protein.
Fig. 1.8 A schemmatic diagram of Ribosomes

Functions
Ribosomes are the sites of protein synthesis. Messenger RNA binds
in the groove between the subunits and specifies the sequence of amino
acids in the growing polypeptide chains. The proteins synthesized on
membrane bound ribosomes must pass successively through each of
cytomembrane system.
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Secretion may involve the fusion of the vacuoles with the plasma
membrane followed by a discharge of the contents into the extra cellular
space. This process is called exocytosis.
1.2.9 Lysosomes
Lysosomes are single membrane vesicles, having intermediate size
between microsomes and mitochondria. These are surrounded by a
lipoprotein membrane (Fig.1.9). Lysosomes are rich in many hydrolytic
enzymes such as phosphatase and ribonuclease and because of this,
they are named as lysosomes (Lyso means lytic action).
Fig. 1.9 A schemmatic diagram of lysosome

Functions
The hydrolytic enzymes of lysosome completely destroy the foreign
materials like bacteria. They also serve to digest cell components after
cell death. Inside the macrophages these lysosomes combine with
vecuole which has engulfed the foreign particles and form
phagolysosomes. Inside these phagolysosomes foreign particles are
degraded or killed. The pathogen engulfed lysosomes are destroyed
by the reticulo endothelial system. Due to this action lysosomes are
called as ‘Suicidal Bags’.
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1.2.10 Peroxisomes
Peroxisomes are otherwise known as microbodies. They are single
- membrane vesicles of about 0.5 mm in diameter. They contain catalase,
D-amino acid oxidase, urate oxidase and other oxidative enzymes.
Functions
Microbodies participate in the oxidation of certain nutrients.
Hydrogen peroxide, the toxic reduction product of oxygen is
decomposed to form water in these organelles.
1.2.11 Cytoplasm
The intracellular cell content that posses both soluble and insoluble
constituents is called cytoplasm.
Cytosol
The soluble liquid portion of the cytoplasm is
known as cytosol in which the organelles are bathed.
Cytosol is also known as cell sap. Cell sap contains
water, proteins, lipids and numerous other solutes
and is highly viscous (Fig.1.10).
Fig. 1.10 Cytoplasm

Functions
Some important metabolic processes occur in the cytosol are
glycolysis, gluconeogenesis, activation of amino acids and biosynthesis
of fatty acids.
Plant Cells
Plant cells have cell wall made up of cellulose and the cytoplasm
consists of big vacuoles and chloroplasts (Fig.1.11).
13
Fig.1.11 Structural organisation of a plant cell
1.2.12 Chloroplasts
The ability to use light as a source of energy for sugar synthesis
from water and carbon dioxide is a special feature of certain plant cells.
This process, termed photosynthesis is carried out in organelles called
chloroplasts. These organelles are commonly ellipsoidal structures
bounded by an outer membrane but also containing a number of internal
membranes. Internally, the chloroplast consists of a series of membranes
arragned in parallel sheets called lamellae and supported in a
homogeneous matrix called the stroma. The membranes are arranged
as thin sacs called thylakoids that contain chlorophyll and may be stacked
on top of one another, forming structures called grana. Lamellar
membranes connecting the grana are called stroma lamellae (Fig.1.12).
14
Fig. 1.12 A schemmatic diagram of chloroplast
1.2.13 Vacuoles
Although vacuoles are present in both animal and plant cells, they
are particularly large and abundant in plant cells, often occupying a
major portion of the cell volume and forcing the remaining intracellular
structures into a thin peripheral layer. These vacuoles are bound by a
single membrane and are formed by the coalescence of smaller vacuoles
during the plant’s growth and development. Vacuoles serve to expand
the plant cell without diluting its cytoplasm and also function as sites for
the storage of water and cell products or metabolic intermediates.
1.3 Blood and body fluids
1.3.1 Blood
Blood is a fluid which circulates in a closed system of blood vessels,
in multicellular and highly complex vertebrate animals. Blood consists
of a pale yellow fluid called plasma and solid elements such as red
blood cells (erythrocytes) while blood cells (leucocytes) and platelets
(thrombocytes).
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1.3.1.1 Composition
Blood contains 55% of the plasma and 45% of the cellular fraction.
The water constitutes about 80% of blood by weight. The cellular
fractions composed of erythrocytes (5 x 106 cells/µl) leucocytes (4.5-
11 x 103 cells/µl) and thrombocytes (3 x 105 cells/µl). The plasma
contains a large number of organic and inorganic substances in solution.
These subtances may be diffusible substances including various
electrolytes, anabolic and catabolic substances formed during
metabolism, vitamins and certain hormones. The non-diffusible
constituents of plasma are albumin, globulin, fibrinogen, enzymes, lipids
etc.
Functions
Blood perform the following functions:
1. Blood transport oxygen from lungs to the tissues and carbondioxide
from the tissues to the lungs. Thus it is responsible for the important
process of respiration.
2. It transports absorbed dietary nutrients from the digestive tract to
all the body tissues.
3. It transports metabolic wastes to the kidneys, lungs, skin and
intestine for removal.
4. It transports various hormones and minerals.
5. It maintains normal acid - base balance in the body.
6. It regulates water balance.
7. It regulates body temperature by the distribution of body heat.
8. White blood cells and antibodies in blood provide, defense against
various type of infections.
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1.3.2 Formation of blood
Blood biosynthesis is known as haematopoiesis. The process consist
of production, development and maturation of cellular elements of blood
(Fig. 1.13). In adults the production of blood cells is carried out by the
bone marrow while in the developing fetus haematopoisis takes place
in extra medullary regions till the bone marrow is matured and functional.
Fig. 1.13 A Schemmatic representation of haematopoiesis
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1.4 Body Fluids
Cerebrospinal fluid and lymph are other important body fluids which
are devoid of red blood cells and so they look colourless.
1.4.1 Cerebrospinal fluid (CSF)
CSF is formed by the choroid plexus of the brain and is an ultrafiltrate
of the plasma. It is present in the central ventricles, spinal canal and
subarachnoid spaces. The total volume of CSF is 100-150ml.
1.4.1.1 Properties
It is a clear, colourless and transparent fluid with a specific gravity
of 1.003 to 1.008. It is alkaline and has the same pH as that of blood
(7.35 to 7.40).
1.4.1.2 Composition
It’s composition is more or less similar to that of plasma without
the colloids.
Protein - 20-45 mg /dl
glucose - 40-80 mg /dl
Chloride - 700-750 mg /dl
Non-protein
Substances like
urea and uricacid etc.- Urea - 20 - 40 mg/dl
Uricacid -1 - 7 mg/dl
Sodium - 300 - 350 mg/dl
Potassium - 11-15 mg/dl
Calcium - 4 - 5 mg /dl
Phosphorous - 1 - 1.5 mg/dl
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1.4.1.3 Functions
It acts as a protective jacket for the brain and spinal cord and
maintains a uniform pressure on the nervous structures. It acts as a
reservoir to regulate the contents of the cranium. To a limited extent it
act as a medium for nutrient exchange in the nervous system.
1.4.1.4 CSF in diseases
The composition of CSF is altered in the following diseased
conditions in human beings.
1. Meningitis 4. Encephalitis
2. Neuro syphilis 5. Polio myelitis
3. Disseminated sclerosis 6. Spinal and brain tumor
7. Cerebral haemorrhage
1.4.2 Lymph
The term ‘lymph’ denotes a fluid not only present in the lymphatic
vessels but also the fluid which bathes in the cells, the tissue or interstitial
fluid.
It resembles plasma in its components and their composition which
can permeate the capillary wall but there are some differences in
electrolyte concentrations.
About 2 litres of lymph are drained into the blood stream per day.
Lymph flow is very slow. The protein present in entire plasma in an
adult human is about 210 gm. About 1/3rd of this leaks out into the
lymph through the interstitial fluid and is returned to the blood at the
thoracic duct. If the thoracic lymph is drained off, the concentration of
plasma proteins fall and the blood volume decreases.
1.4.2.1 Functions
Lymph is the main route of absorption of long chain fatty acids,
partially digested fats, diacyl glycerol and cholesterol from the intestine
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and their transport via the thoracic duct. Lymph also helps to keep the
tissues from drying up by maintaining contact with the interstitial fluids.
1.5 Buffers
A buffer is a mixture of a weak acid and its salt with a strong base
(eg) A mixture of acetic acid and sodium acetate.
HAC + NaAC -----> Na+ +H+ + 2AC-
where HAC = Acetic acid; NaAC = Sodium acetate.
A buffer solution is one which resists a change in its pH value
(hydrogen ion concentration) on dilution or on addition of an acid or
alkali. The process by which added H+ and OH- ions are removed so
that pH remains constant is known as buffer action.
For (eg) if alkali is added to the above mentioned buffer it forms
NaAC and no free H+ or OH- will be available.
[Na+ + H+ + 2AC-] + NaOH ------> 2NaAC + H2O
If an acid is added to the buffer it will form NaCl and no free H+ or
-
OH will be available.
HAC + NaAC + HCl --------> NaCl + 2 HAC
In either cases there is no change in hydrogen ion concentration
i.e. it resist the change in pH of the solution.
1.5.1 Examples of buffer - A mixture of
1. Glycine and HCl
2. Potassium dihydrogen phosphate and dipotassium hydrogen
phosphate.
3. Sodium bicarbonate and sodium carbonate.
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1.5.2 Uses of buffer
1. Bufers are used for preparing standard solutions in which it is always
desired to maintain a constant pH.
2. These are used to maintain H+ concentration which is necessary
for optimal activity of enzymes.
3. Buffers regulate acid-base balance by restricting pH change in body
fluids and tissues, since they are capable of absorbing H+ ions and
OH- ions when an acid or an alkali is formed during metabolic
activities.
1.5.3 Buffers of blood
The important buffers present in blood are
a. Bicarbonate buffer
b. Phosphate buffer
c. Protein buffer
d. Hemoglobin buffer
1.5.3.1 Bicarbonate buffer
It is the most important buffer in blood plasma and consist of
bicarbonate [HCO3-] and carbonic acid [H2CO3]
This buffer is efficient in maintaining the pH of blood plasma to 7.4
against the acids produced in tissue metabolism (eg) phosphoric acid,
lactic acid, aceto acetic acid and β-hydroxy butyric acid. These acids
are converted to their anions and the bicarbonate is converted to
carbonic acid a weak acid.
HCO3- + H+ (obtained from acids) -----> H2CO3 ----->CO2
CO2 thus formed is expirated through lungs during respiration.
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1.5.3.2 Phosphate buffer
The phosphate buffer consists of dibasic phosphate [HPO42-] and
monobasic phosphate (H2PO4-). Its pKa value is about 6.8. It is more
effective in the pH range 5.8 to 7.8. Plasma has a ratio of 4 between
[HPO4--] : [H2PO4-].
[HPO4--]
Therefore pH = pKa + log
[H2PO4-]
pH = 6.8 + log 4 = 7.4 [7.4 is the normal pH of blood]
1.5.3.3 Protein buffer
The protein buffers are very important in the plasma and in the
intracellular fluids but their concentration is very low in CSF, lymph and
interstitial fluids.
They exist as anions serving as conjugate bases (Pr-) at the blood
pH 7.4 and form conjugate acids (HPr) accepting H+. They have the
capacity to buffer some H2CO3 in the blood.
H2CO3 + Pr- HCO3- + HPr H2CO3 CO2
1.5.3.4 Hemoglobin buffer
They are involved in buffering CO2 inside erythrocytes. The
buffering capacity of hemoglobin depends on its oxygenation and
deoxygenation. Inside the erythrocytes, CO2 combines with H2O to
form H2CO3 under the action of carbonic anhydrase. At the blood pH
7.4, H2CO3 dissociates into H+ and HCO3- and needs immediate
buffering. Oxyhemoglobin (HbO2-) on the other side loses O2 to form
deoxyhemoglobin (Hb-) which remains undissociated (HHb) by
accepting H+ from the ionization of H2CO3. Thus, Hb- buffers H2CO3
in erythrocytes.
HbO2- Hb- + O2
Hb- + H2CO3 HHb + HCO3-
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1.6 Acids and bases
According to the modern concept, an acid is defined as that species
which can donate H+ ions (protons) in solution and a base is that species
which can accept H+ ions. Since such transfer of protons is reversible
any acid which gives up its proton becomes a base, while any base
which accepts a proton becomes an acid. This theory was postulated
by Bronsted and Lowry in 1923. The following general equation canbe
written as
Acid H+ + Base
An acid and a base related in this manner are called conjugates
For (eg) in this reaction
HCl H+ + Cl-
HCl is acid and Cl- is its conjugate base.
Other examples
H2CO3 H+ + HCO3-
H2SO4 H+ + HSO42-
An acid which dissociates strongly and readily gives H+ ions is
known as a strong acid. The capacity of an acid to release its protons
is known as acidity.
A base which has more affinity to combine with H+ ions is known
as a strong base. This property of a base is known as alkalinity (eg)
HCO3-, HSO42-, H2PO4- etc.
The acidity of a species is denoted by its pH value : larger the
acidity of a species, lower will be its pH value.
1.6.1 pH - It is defined as the negative logarithm of hydrogen ion
concentration (or) it is defined as the logarithm of reciprocal of the
hydrogen ion concentration.
i.e. pH = - log [H+] (or) pH = log 1/[H+]
Acidic - 1 - 6.9 Neutral 7.0 Alkaline 7.1 - 14.
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1.6.1.1 Determination of pH -Henderson - Hasselbalch equation
Derivation
This concerns the dissociation of weak acid in equilibrium.
Let us consider HA a weak acid that ionises as follows:
HA [H+] + [A-]
[H+] [A-]
L Ka = [where Ka = Dissociation constant]
[HA] Ka x [HA]
[HA] L H +
=
[A-]
log [H+] = log Ka + log [Taking log on both sides].
-
[A ]
[HA]
-log [H+] = -log Ka -log [Chaning sign on both sides].
[A-]
pH = pKa + log [HA] / [A-] since -log H+ = pH and - log Ka = pKa

[Salt]
pH = pKa + log
[Acid]
The above equation is known as Henderson - Hasselbalch equation.

and can be used for the determination of pH of blood.
1.6.1.2 Determination of pH of buffers
The pH of buffers can be determined by Henderson - Hasselbalch
equation.
pH = pKa + log [salt] / [Acid]
where pKa = log 1/Ka Ka = Dissociation Constant of an acid and
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[H+] [Ac-]
Ka = for the reaction
[HAC]
HAC [H+] + [Ac-]
Ka x [HA]
L H+ =
[A-]
In case of blood, the ratio between [BHCO3] : [H2CO3] can
be found out by applying the above equation to maintain average pH of
blood 7.4. If the pKa value of H2CO3 is 6.1.
then
[BHCO3]
7.4 = 6.1 + log
[H2CO3]
[BHCO3]
L log = 1.3
[H2CO3]
[BHCO3]
L log = log 20
[H2CO3]
[BHCO3]
log = 20/1
[H2CO3]
So [BHCO3] : [H2CO3] = 20:1
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1.6.1.3 pH in living organisms
The fluid in the cells and tissues of plants and animals is usually
close to neutrality and the pH of extracellular fluids under normal
conditions varies from 7.35 to 7.5.
1.6.1.4 Regulations of acid-base balance (pH maintenance)
The following mechanisms control the regulation of acid-base
balance in the human body.
1. Buffer system : Hemoglobin, phosphate and carbonate -
bicarbonate buffers are involved in the maintenance of pH since
they are capable of neutralising H+ or OH- ions formed during
metabolic activities.
2. Respiratory regulation : Lungs are actually the most effective
organs for pH adjustment : One half of the H+ ions drained by the
cells to the extra cellular fluids combine with HCO3- to form H2CO3
which dissociates in to H2O and CO2. The CO2 thus formed is
expirated through lungs. So accumulation of H+ ions is prevented.
3. Renal regulation
Kidney contribute for acid-base balance by excreting acids and
ammonia. The excess of acids produced in the metabolic pathways are
eliminated by kidneys in the form of urine. Ammonia is a base and
formed in the tubular epithelial cells from glutamine. Glutamine is
deaminated and then dehydrogenated to form two moles of ammonia.
The ammonia so formed diffuses into the tubular urine and binds H+
ions to form NH4+ and excreted as such in urine. If not excreted,
ammonia accumulation in blood leads to acid-base imbalance.
If acids and ammonia accumulate in the blood, it lead to acidosis
and alkalosis respectively.
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Excercise
I. Choose the correct answer from the given four alternatives.

a. In the cell membranes, lipids are arranged as
i. Monolayers ii. Bilayers
iii. Random layers iv. Trilayers
b. Mitochondria are
i. Suicidal bags ii. Power houses of cells
iii. Carrier of genetic information iv. Site of protein biosynthesis
c. The fluid which maintains a uniform pressure on the nervous
system is
i. Blood ii. Lymph fluid
iii. Cerebrospinal fluid iv. All the above
d. The organelle involved in photosynthetic activity is
i. Chloroplast ii. Mitochondria
iii. Nucleus iv. Ribosomes
e. The normal pH of blood is
i. 6.0 ii. 7.4 iii. 8.0 iv. 4.2
II. Fill up the blanks
a. Man is an example for ____________ organism
b. Subcellular organelles ____________ present in
Eucaryotic and ___________ present in procaryotic cells.
c. _____________ is the most important buffer in blood plasma
d. _____________ is an infectious state of CSF
e. __________is the negative logarithm of H+ ion concentration.
27
III. Say true or false
a. Eukaryotic organisms are primitive type.
b. Lysosomes are knows as suicidal bags.
c. CSF maintains a uniform pressure on the nervous system.
d. Nucleolus contains DNA
e. Pili is present in eukaryotic cells.
f. Vacuoles are significantly bigger in plant cells.
IV. Match the following
1. Distinct vacuole - Plant cell
2. Pili - Henderson - Hasselbalch equation
3. pH - Suicidal bags
4. Lysosomes - Ribosomes
5. Endoplasmic reticulum - Prokaryotic cells
V. Give one word answer
a. What is the major function of ribosomes?
b. What is plasma?
c. What is the normal pH of blood?
d. Write Henderson - Hasselbalch equation?
e. What are intrinsic proteins?
VI. Answer the followings:
a. Explain the lipid bilayer structure of cell membrane.
b. Give the schemmatic diagram of an Eukaryotic cell.
c. Give the composition and functions of CSF.
d. How is acid-base balance maintained in human body.
e. Derive Henderson - Hasselbalch equation and mention its
significance.
28
CHAPTER 2
BIOMOLECULES
2.1 Introduction
The human body is composed of major elements such as carbon,
hydrogen, oxygen and nitrogen that combine to form a great variety of
molecules called biomolecules. The four major complex biomolecules
are carbohydrates, proteins, lipids and nucleic acids.It is very important
to know the nature and functions of these biomolecules.
2.2 Carbohydrates
2.2.1 Importance
Carbohydrates are widely distributed in both plant and animal
tissues. They are indispensible for living organisms and serve as skeletal
structures in plants and also in insects and crustaceans. They occur as
food reserves in the storage organs of plants and animals. They are the
important source of energy required for the various metabolic activities
of the living organisms.
2.2.2 Definition
Carbohydrates are defined as polyhydroxy aldehydes or ketones
and are generally classified as follows.
2.2.3 Classification
Carbohydrates are generally classified into 4 major groups :
1. Monosaccharides
2. Disaccharides
29
3. Oligosaccharides and
4. Polysaccharides
2.2.3.1 Monosaccharides
These are carbohydrates that cannot be hydrolysed into more
simpler form. These are otherwise known as simple sugars. The general
formula is Cn(H2O)n. They may be subdivided into trioses, tetroses,
pentoses and hexoses depending upon the number of carbon atoms
they contain and also subdivided as aldoses and ketoses depending
upon the presence of aldehyde or ketone groups (eg).
No.of
Carbon atoms Aldoses Ketoses
3 Glycerose (or) Dihydroxy

(Triose) Glyceraldehyde acetone
4
(Tetrose) Erythrose Erythrulose
5 Ribose, Xylose Ribulose

(Pentose) Arabinose Xylulose
6 Glucose, Galactose Fructose

(Hexose) Mannose
7 Glucoheptose Pseudo
Heptose Galactoheptose heptulose
Simplest form of aldose - Glyceraldehyde

Simplest form of ketose - Dihydroxy acetone
Commonest aldose - Glucose
Commonest ketose - Fructose
30
Functions
1. Ribose is a structural element of nucleic acids and also of some
coenzymes.
2. Glucose on oxidation yield energy which is required for various
metabolic activities.
3. Fructose is found in fruits, honey etc.which are responsible for
sweetness and can be converted to glucose and utilised in the body.
4. Galactose is a component of milk sugar-lactose, glycolipids and
glycoproteins
5. Mannose is a constituent of mucoproteins and glycoproteins which
are essential for the body.
2.2.3.2 Disaccharides
These are carbohydrates that yield two molecules of same or
different types of monosaccharides on hydrolysis. The general formula
is Cn(H2O)n-1 (eg) Lactose, Maltose and Sucrose. The monosaccharide
units are united by a glycosidic linkage.
Functions
1. Lactose is otherwise called as milk sugar. It is present in milk and
is made up of monosaccharides - glucose and galactose.
Glucose + Galactose Lactose
2. Maltose is otherwise known as ‘malt sugar’ and is present in
germinating cereals, malt etc.It is the intermediate product in the
hydrolysis of starch by amylase in the alimentary canal. It is made
up of 2 molecules of glucose.
Glucose + Glucose Maltose
3. Sucrose is otherwise called as ‘table sugar’ or ‘cane sugar’. It is
the common sugar and is widely distributed in all photosynthetic
plants. It does not exist in the body but occurs in sugarcane,
pineapple, sweet potato and honey. It is made up of glucose and
fructose.
Glucose + Fructose Sucrose
31
2.2.3.3 Oligosaccharides
These are carbohydrates that yield 2-10 monosaccharide units on
hydrolysis.eg. Maltotriose.
2.2.3.4 Polysaccharides
These carbohydrates yield more than 10 monosaccharide units on
hydrolysis. They are further classified into homopolysaccharides and
heteropolysaccharides.
P o ly s a c c h a rid e s
H om opoly H eteropolysaccharides
saccharides (M ucopolysaccharides)
S torage S tructrual
polysaccharides polysaccharides H eparin C hondroitin H yaluronic K eratan
sulphate acid sulphate
P lant A nim al P lant A nim al

(Starch) (G lycogen) (C ellulose) (chitin)
Homopolysaccharides
These on hydrolysis yield same type of monosaccharide units.
(eg). starch, glycogen, cellulose, inulin, pectin and hemicellulose yield
only glucose on hydrolysis.
Heteropolysaccharides
These on hydrolysis yield a mixture of different types of
monosaccharides. The heteropolysaccharides situated in extra cellular
matrix are called as mucopolysaccharides.
(eg). hyaluronic acid, heparin, keratan sulphate and chondroitin sulphate.
32
Hyaluronic acid is made up of glucuronic acid and N-acetyl glucosamine
Hydrolysis Glucuronic acid +

Hyaluronic acid N-acetyl glucosamine
Heparin is made up of glucosamine and glucuronic acid
Hydrolysis
Glucosamine +
Heparin Glucuronic acid
Chondroitin sulphate is made up of either glucuronic acid (A and C

type) or Iduronic acid ( B type) and 2-N-acetyl amino galactose.
Chondroitin Hydrolysis Gucuronic (or) Iduronic acid

sulphate + Acetyl amino galactose
Keratan sulphate consists of N-acetyl galactosamine, galactose and

sulphuric acid
Keratan Hydrolysis N-acetyl glucosamine +
sulphate Galactose + Sulphuric acid
Functions
1. Starch is made up of repeated units of glucose moiety. It is the
most important source of carbohydrate in our food. Such a
compound which produces only glucose on hydrolysis is called a
glucosan, and is found in cereals, potatoes, legumes and other
vegetables.
2. Glycogen is the major carbohydrate reserve in animals and is often
called animal starch. It is stored in liver and muscle of animals.
It is also found in plants which have no chlorophyll system [eg.
fungi and yeasts] but not in green plants.
3. Cellulose is widely distributed in plant sources. It occurs in the cell
walls of plants where it contributes to the structure. It is the main
33
consituent of the supporting tissues of plants and forms a
considerable part of vegetables.
4. Pectin and hemicellulose are present in fruits of many plants and
serve as jelling agents.
5. Hyaluronic acid occurs in synovial fluid, in skin and in tissues. It
acts as a cementing substance in tissues and also acts as a lubricant.
It is also present in vitreous humor.
6. Heparin is used in medicine as an anticoagulant and prevents blood
clotting.
7. Keratan sulphate is an important component of cartilage and
cornea.
2.3 Proteins
2.3.1 Definition
Proteins may be defined as the high molecular weight polymers
composed of α-amino acids united to one another by peptide linkage
(-CO-NH-). Proteins are the major consitituents of all living organisms.
They contain carbon, hydrogen, nitrogen, oxygen and sulphur.
They are classified into 3 main groups.
1. Simple protein : These proteins on hydrolysis yield only α-amino
acids. (eg). albumin, globulin
2. Conjugated protein : These are proteins composed of simple
proteins combined with non-protein part called as prosthetic groups.
They are further subdivided into:
a. Nucleo protein : Proteins present along with nucleic acids.
(eg) Histones and Protamines.
b. Phosphoprotein : These are protein containing phosphoric
acid (eg) casein of milk.
c. Glycoprotein : These are proteins containing carbohydrate
moiety as prosthetic group. (eg.) Gonadotropic hormone,
mucous glycoprotein mucin (saliva) and osseomucoid
(bone)
d. Chromoprotein : These proteins contain heterocyclic
compounds like porphyrins as the prosthetic group. (eg)
Hemoglobin and Myoglobin.
e. Lipoproteins : These are proteins conjugated with lipids
(eg) chlyomicron, very low density lipoprotein (VLDL),
low density lipoprotein (LDL) and high density lipoprotein
(HDL).
f. Metalloproteins : These proteins contain metal as prosthetic
group (eg) Siderophilin (Fe) and Ceruloplasmin (Cu).
3. Derived proteins : These are proteins derived from the simple and
conjugated proteins by the action of acids, alkalies or enzymes.
They are the products resulting from partial to complete hydrolysis
of proteins. (eg.) proteoses, peptones and peptides.
2.3.3 Functions
1. Proteins are the essence of life processes.
2. They are the fundamental constituents of all protoplasm and are
involved in the structure of a living cell and in its functions.
3. Enzymes are proteins which act as biocatalysts.
4. Proteins serve as components of the tissues holding the skeletal
elements together.
5. Nucleoproteins serve as carrier of genetic characters and hence
govern inheritance of traits.
6. They execute their activities in the transport of various compounds.
7. Some hormones are proteins which regulate numerous physiological
functions.
8. They function in the homeostatic control of the volume of the
circulating blood.
9. They are involved in blood clotting through thrombin, fibrinogen
and other protein factors.
10. They act as the defense against infections by means of antibodies.
2.3.3.1 Functional diversity of proteins
Proteins are the fundamental constituents of all protoplasm and are
involved in the structure and functions of living cells. Proteins have many
different biological functions.
1. Catalytic proteins
Enzymes are proteins which have catalytic power, far beyond that
of man-made catalysts. They enhance the rate of biochemical
reactions.
(eg.) amylase, carbonic anhydrase etc.
2. Nucleoproteins
Histones are basic proteins found in association with nucleic acids.
They serve as carriers of genetic characters and hence govern
inheritance of traits.
3. Hormonal proteins
Some hormones are proteins which regulate numerous physiological
functions. (eg) growth hormone, insulin and glucagon.
4. Storage proteins
They have the function of storing aminoacids as nutrients and as
building blocks for the growing embryo. (eg) casein of milk,
ovalbumin of egg white.
5. Transport proteins
They are capable of binding and transporting specific types of
molecules via blood. (eg) hemoglobin and albumin.
36
6. Contractile proteins
Proteins such as actin and myosin in skeletal muscle function as
essential elements in contractile and motile systems.
7. Defensive proteins
Some proteins have protective or defensive functions. The blood
proteins - thrombin and fibrinogen participate in blood clotting.
Antibodies or immunoglobulins are protective proteins which prevent
the onset of diseases in the body.
8. Structural proteins
Proteins such as collagen, keratin etc. serve as structural elements.
9. Toxic proteins
Ricin of caster bean, diphtheria toxin and botulinum toxin represents
another group of proteins which cause dysfunctions and disorders
in the body.
2.4 Lipids
2.4.1 Definition
Lipids are the heterogenous group of compounds, actually or
potentially related to fatty acids. Chemically, they can be defined as
esters of fatty acids with alcohol.
Lipids are relatively insoluble in water and soluble in solvents like
ether, chloroform and benzene.
2.4.2 Classification : Lipids are classified into :-
1. Simple lipids
These are esters of fatty acids with various alcohols. They are
further classified into,
a. Fats : Esters of fatty acids with glycerol. A fat in the liquid
state is known as oil.Simple lipids in animals are called as
fats and in plants as oils.
(eg) Triacyl glycerol.
37
b. Waxes : Esters of fatty acids with high molecular weight
monohydric alcohols.
(eg) : Cholesterol ester, myricyl palmitate and cetyl palmitate.
2. Compound lipids
These are esters of fatty acids with alcohol, but it contains extra
groups in addition to alcohol and a fatty acid. They are subdivided
into the followings :
A. Phospholipids (Phosphatides)
They are esters of fatty acids with glycerol containing an esterified
phosphoric acid and a nitrogen base. These lipids are present in large
amounts in nerve tissue, brain, liver, kidney, pancreas and heart.
Phospholipids are further classified into 3 types based on the type of
alcohol present in the phospholipid
(i) Glycerophosphatides - In this, glycerol is the alcohol group.
(eg) Lecithin - Choline as base
Cephalin - Ethanolamine as base
Phosphatidyl serine - Serine as base
Plasmalogens - either Choline or Ethanolamine as base.
(ii) Phosphoinositides
In this phospholipid, inositol - an hexahydric alcohol is present
along with the back bone glycerol (eg) Phosphatidyl inositol
(lipositol)
(iii) Phosphosphingoside - in this phospholipids, sphingosine is the
alcohol (amino alcohol)
(eg) Sphingomyelin.
B. Glycolipids - These lipids contain a carbohydrate moiety along
with an amino alcohol. These are further classified into
(i) Cerebrosides : Contain galactose, a high molecular weight
fatty acid and sphingosine.
38
(ii) Gangliosides - contain ceramide (sphingosine + fatty acid)
glucose, galactose, N-acetyl galactosamine and sialic acid.
C. Lipoproteins - lipids like triacyl glycerol, phospholipids,
cholesterol and cholesteryl esters and free fatty acids combine
with protein in particular proportions and form a hydrophilic
lipoprotein complex (eg) chylomicrons, very low density
lipoprotein (VLDL), low density lipoprotein (LDL) and high
density lipoprotein (HDL). The protein moiety in the lipoprotein
is known as apoprotein.
(3) Derived lipids : These are lipids which are derived from the
hydrolysis of simple and compound lipids. (eg) diacyl glycerol,
fatty acids, glycerol and cholesterol.
2.4.3 Functions
1. Fats stored in adipose tissue serve as an efficient source of energy
2. Fats serve as a thermal insulator in the subcutaneous tissue and
around the internal organs.
3. They also act as electrical insulator against nerve impulse
transmission.
4. Cholesterol and phospolipids are important constituents of cell
membranes.
5. Lipoproteins and glycolipids maintain cellular integrity and
permeability.
6. Fats serve as the important source of fat soluble vitamins.
7. The phosphatides of blood platelets are involved in blood clotting
mechanism.
2.5 Nucleic acids
Nucleic acids are a polynucleotides consisting of repeated units of
mononucleotides.
39
2.5.1 Definition
Nucleic acids are the polymers of nucleotides. A nucleotide is a
nucleoside containing phosphate group. A nucleoside is made up of a
purine or pyrimidine nitrogenous base linked to a pentose sugar.
Pentose sugar + purine or Nucleoside
pyrimidine base
Nucleoside + phosphate Nucleotides
Nucleotides (n) Nucleic acids
2.5.2 Classification : Nucleic acids are classified into
1. Deoxyribonucleic acids (DNA)
The most important consistuent of chromosome and exist as double
stranded helix. The nitogenous bases present are adenine, guanine,
cytosine and thymine and the pentose sugar is deoxyribose.
2. Ribonucleic acids (RNA)
RNA is a polymer of purine and pyrimidine ribonucleotides linked
together by 3’, 5’ phosphodiester bridges. The nitrogenous bases
are adenine, guanine, cytosine and uracil and the pentose sugar is
ribose.
Types of RNA - There are 3 main classes of RNA molecules exist
in all prokaryotic and eukaryotic organisms - They are
a. messenger RNA (mRNA).
b. transfer RNA (t RNA)
c. ribosomal RNA (r RNA)
2.5.3 Functions of DNA
1. DNA serves as genetic material in cells.
2. DNA provides information inherited by the daughter cells and is
also a source of information for the synthesis of proteins and it
produces mRNA essential for protein biosynthesis.
40
2.5.4 Functions of RNA
1. It primarily functions in the cytoplasm of the cell as template for the
synthesis of protein.
2. It carries genetic information from DNA to the site of protein
biosynthesis.
3. It is an essential component of ribosome
4. Some RNA has enzymatic activity
5. It serves as genetic material for viruses such as tobacco mosaic
virus, polio virus etc.
Excercise
I. Choose the correct answer from the given four alternatives
a. Glucose is a
i. Monosaccharide ii. Dissaccharide
iii. Oligosaccharide iv. Polysaccharide
b. An example for homopolysaccharide is
i. Hyaluronic acid ii. Cellulose
iii. Mannose iv. Starch
c. Chylomicron belongs to the group of
i. Metalloprotein ii. Chromoprotein
iii. Lipoprotein iv. Nucleoprotein
d. High molecular weight alcohols are present in
i. Waxes ii. Fats iii. Oils iv. Phospholipids
e. The differential base present in DNA and RNAis
i. Adenine ii. Guanine
iii. Cytosine iv. Uracil
41
a. The general formula of disaccharides is ________________
b. _____________ is called as animal starch
c. The prosthetic group present in nucleoprotein is _________
d. __________ is a transport protein
e. DNA produce _____________ which is the source of information
for protein biosynthesis.
a. A disaccharide may contain different types of monosaccharide
units.
b. Heparin is a homopolysaccharide
c. Glycoproteins exist in gastric mucosa.
d. Sphingolipid is a phospholipid
e. The genetic material in tobacco mosaic virus in RNA.
1. Fructose - Disaccharide
2. Ribose - Amylose
3. Starch - Nucleic acids
4. Hyaluronic acid - Ketose sugar
5. Maltose - Heteropolysaccharide
V. Give one word answer for the followings
a. What is the functional group present in ribulose
b. Which sugar is known as milk sugar
c. How will you differentiate fats and oils.
d. Give an example for catalytic proteins
e. What are nucleosides.
42
VI. Answer the following
a. Give the classification of carbohydrates with examples.
b. Explain the functions of polysaccharides.
c. What are conjugated proteins? Explain their functions.
d. Give the classification of compound lipids. Explain their functions.
e. Explain the functions of DNA and RNA.
43
CHPATER 3
ENZYMES
3.1 Introduction
All the enzymes are proteins and they are produced by the living
cells. They act as biological catalysts. Enzymes catalyse and enhance
the rate of biochemical reactions occuring in various vital processes
like breathing, digestion, pumping of heart, formation of body tissues,
contraction of muscles, transport of ions across the plasma membranes
etc.So without enzymes there is no life. They are inactive at OoC and
destroyed by moist heat at 100oC.
The term enzyme was first used by Kuhne (1878) to designate
these ‘biological catalysts’. Sumner and My Back (1950) have defined
the enzymes as “Simple or combined proteins acting as specific
catalysts”. They affect the life of an organism to such an extent that life
has aptly called as an orderly function of enzymes.
The substances on which the enzymes act are called as “Substrates”.
Enzymes are highly specific in their action (i.e) an enzyme can act on a
single or a small group of closely related substrates. During catalytic
action, the enzymes do not undergo any permanent modification and
regenerated at the end of the reaction. The general enzyme catalysed
reaction takes place as per the equations
E+S ES
ES E+P
E - Enzyme; S = Substrate; ES - Enzyme-Substrate complex;
P = product. ES complex is an unstable and highly energised complex.
44
For example.
α amylase acts on starch and produce maltose units. In this reaction
α−amylase is the enzyme, starch is the substrate and maltose is the
product.
α- amylase + starch α- amylase - starch
(E) (S) (ES)
α- amylase - starch α- amylase + maltose
(ES) (E) (P)
Most of the enzymes, synthesised by a living cell, function within
that cell and hence are called as endo enzymes or intra cellular enzymes.
Some enzymes are liberated from the living cells after synthesis, secreted
to the environment and function in extra cellular regions. These enzymes
are called as exoenzymes or extra cellular enzymes.
3.2 Chemical nature of enzymes
All the enzymes are proteins with no exception. Some enzymes
are simple proteins i.e. their molecules consist of only amino acids.
Many enzymes are conjugated proteins and their molecules consist of
aminoacids and a non-protein part (not made up of amino acids). The
non-protein part of the enzyme is known as coenzyme or prosthetic
group, without which the enzyme is inactive. The protein part of the
enzyme (in conjugated type) is known as the apoenzyme. The coenzyme
and the apoenzyme complex is called as holoenzyme.
Coenzyme + Apoenzyme Holoenzyme
For example, pyruvate decarboxylase is an enzyme which catalyses
the decarboxylation of pyruvate to form acetaldehyde. The non-protein
part of the enzyme is thiamine pyro phosphate without which the reaction
can not be proceeded.
Thiamine pyrophosphate + Pyruvate decarboxylase Pyruvate
TPP Protein decarboxylase
- TPP
(prosthetic group) (apoenzyme) (holoenzyme)
45
The non-proteinaceous part is either loosely or tightly bound with
the apoenzyme. If the coenzymes are tightly bound with the apoenzymes
the coenzymes are called as prosthetic groups. The losely attached
coenzymes are simply called as coenzymes. A biologically active enzyme
exist in 3-dimensional folded structure (conformation).
3.2.1 Active site
A restricted region of the enzyme to which the substrate comes
and binds and concernes with the process of catalysis is called as the
active site. In some enzymes, the active site is a deep groove into which
the substrate binds. Specific amino acids are present in the active site
which are responsible for the catalytic action. These amino acids are
called as ‘catalytic’ or ‘active’ amino acids. For example lysozyme has
glutamic acid and aspartic acid as catalytic aminoacids. Chymotrypsin
which is a proteolytic enzyme contains serine and histidine as catalytic
amino acids.
The active site and the other part of the enzyme undergo
conformational modification when they come in contact with the
substrate
i te
E
a cti
ve s
+
s ES E
S } E S C o m plex
(altered con form ation)
Koshland’s induced fit hypothesis of enzyme-substrate interaction

postulates that the active site of the enzyme consists of a number of
‘active’ contact amino acids which permit the substrate to come close
to the reactive groups of the enzyme which thereupon undergoes a
conformational change, binding the substrate firmly to the enzyme and
promoting catalytic activity.
3.3 Naming of enzymes
Except the enzymes ptyalin, pepsin, trypsin and renin, all the other
enzymes are usually named by adding suffix - ase to the main part of
the name of the substrate on which they act.
46
Examples :
Maltase acts on maltose
Lactase acts on lactose
Lipases act on lipids
Proteases act on proteins
Amylases act on starch (amylum)
3.4 Classification of enzymes
The most comprehensive system for the classification of enzymes
was devised in 1961 by the Enzyme Commission of International Union
of Biochemistry (IUB).
The 6 major classes of enzymes are
1. oxidoreductases
Enzymes catalyzing oxidoreduction reactions between two
substrates A and B are called as oxidoreductases
A + B A + B
(reduced) (Oxidised) (Oxidised) (Reduced)
Example : (i) Cytochrome C-oxidase
C ytochrom e (C 1 ) + C ytochrom e (a)

Fe 2+ Fe 3+
C ytochrom e (C 1 ) + C ytochrom e (C 1 )
Fe 3+ Fe 2+
In this reaction cytochrome C1 is oxidised and cytochrome a is

reduced simultaneously by the action of cytochrome C-oxidase.
This class includes several subclasses based on the group on which
the enzymes act. The enzymes acting on
47
-CH -OH (1.1)
-C=O (1.2)
-C=CH (1.3)
-CH-NH2 (1.4)
-CH-NH (1.5)
2. Transferases
Enzymes catalysing the transfer of a group (x) from one
substrate(AX ) to another (B) are known as transferases.
AX + B A’ + BX
Example
The reaction catalysed by alanine transaminase (ALT) is
α -Keto
L-Alanine ALT Pyruvate Glutamate
+ glutarate +
(Ax) (B) (A') (Bx)
In this reaction the amino group from alanine is transferred to

α-ketoglutarate to form glutamate.
These enzymes are further divided into subclasses on the basis of
nature of the group transferred.
Transfer of (a) one carbon compounds (2.1)
(b) aldehyde or ketonic groups (2.2)
(c) acyl groups (2.3)
(d) glycosyl groups (2.4)
(e) Phosphate groups (2.7)
(f) Sulphur containing groups (2.8)
48
3. Hydrolases
The hydrolases are those enzymes which catalyse hydrolysis
reactions i.e the direct addition of water molecule (s) across the bond,
which is to be cleaved. The substrate for these enzymes are esters,
ethers, peptides and glycosides.
Example : Pepsin. This enzyme is a gastro intestinal enzyme which is
proteolytic in nature and involve in the hydrolysis of proteins present in
the food.
P epsin S m aller peptides

P rotein +
and am ino acids
O H O H
H2O
|| | || |
R - CH2 - C - N -CH2 - C - N - CH2 - CONH- R
OH- H +
(Protein)
O H O H
|| | || |
R - CH2 - C - N -CH2 - C + N - CH2 - CO - NH - R
(C-terminal | | (N-terminal
Peptide) OH H Peptide)
The hydrolases are divided into several subclasses, depending on
the nature of the group or bond being hydrolysed viz.,
(a) esterases etc. - hydrolyse ester bonds (3.1)
(b) glycosidases - hydrolyse glycosidic bonds (3.2)
(c) peptidases - hydrolyse peptide bonds (3.4)
49
4. Lyases
The lyases are a smaller class of enzymes that catalyse the removal
of a small molecule from a larger substrate molecule. Since the reactions
are reversible, lyases may also be considered to catalyse the addition
of small molecules to the substrate molecule
x y
C C C = C + x-y
Example : Aldolase
Fructose-1-6-diphosphate Dihydroxy acetone phosphate
+ glyceraldehyde 3-phosphate
CH2 - O P
C O CH2 - O P
Aldolase H C O
HO C H C O
+
H H C OH
C OH CH2 - OH
H CH2 - O P
C OH
HO
CH2O P Glyceraldehyde Dihydroxy acetone
3-phosphate phosphate
Fructose 1,6 biphosphate
The lyases are further classified on the basis of the linkage they
attack viz., acting on
a. C-C bond (4.1)
b. C-O bond (4.2)
c. C-N bond (4.3)
50
d. C-S bond (4.4)
e. C-halide bond (4.5)
5. Isomerases
This class includes all enzymes which catalyse isomerization
reactions i.e. interconversion of optical, geometrical or position
isomers.
Example
Retinene isomerase catalyses the conversion of
trans-retinene cis-retinene
Triose phosphate isomerase catalyses the conversion of
D - glyceraldehyde 3- phosphate Dihydroxy acetone
phosphate
The isomerases are further divided into the subclasses
a. racemases (5.1)
b. epimerases (5.2)
c. cis-trans isomerases (5.3)
6. Ligases
These enzymes are otherwise known as synthetases. They catalyse
synthesis reactions by joining two molecules, coupled with the
breakdown of a phosphate bond of adenosine triphosphate. ATP
cleavage provides energy for the new bond formation.
Example : Formation of malonyl CoA from acetyl CoA in the
presence of acetyl CoA carboxylase.
ATP + acetyl CoA + CO2 ADP + Pi + malonyl CoA
The subclasses of ligases are based on the nature of bond formed
in the product. Formation of
51
a. C-O bond (6.1)
b. C-S bond (6.2)
c. C-N bond (6.3)
d. C-C bond (6.4)
Class, subclass and enzyme numbers of some enzymes
1. Alcohol dehydrogenase (ADH)
Major class - oxidoreductase (1)
Subclass - acting on CH-OH (1)
Sub subclass - NAD or NADP as coenzymes (1)
Enzyme no - 1.1.1
2. Hexo kinase
Major class - Transferases (2)
Sub class - Transfering phosphate group (7)
Enzyme No. - 2.7.
3. Alkaline phosphatase
Major class - Hydrolases (3)
Subclass - acting on esterbond (1)
Sub subclass - acting on phosphoric monoesters (3)
Enzyme No. - 3.1.3
4. Fumarase
Major class - lyases (4)
Sub class - CO lyase (2)
Sub subclass - acting on aldehyde (1)
Enzyme No. - 4.2.1
52
5. Ribulose - 5 - phosphate epimerase
Major class - Isomerases (5)
Subclass - Racemases and Epimerases (1)
Sub subclass - acting on carbohydrates (3)
Enzyme no - 5.1.3
6. Acetyl CoA carboxylase
Major class - ligases (6)
Sub class - forming C-C bond (4)
Sub subclass - carboxyl group (1)
Enzyme No. - 6.4.1
3.5 Factors influencing enzyme activity
The activity of enzymes is markedly affected by several factors.
These factors are
1. temperature 2. pH 3. substrate concentration 4. metal ions
(activators) 5. inhibitors 6. enzyme concentration etc.
3.5.1 pH
All the enzymes have a particular pH at which their activity is
maximal; above or below this pH the activity is low. The pH at which
the enzyme shows maximum activity is known as optimum pH. Some
of the enzymes and their optimum pH are
(a) Pepsin - 2.0 (b) Urease - 7.0
(c) Salivary amylase - 6.8 (d) Alkaline phosphatase - 9.9
Only in this optimum pH, ionisation of active amino acids in enzymes
and substrate are favoured for ES complex formation.
The pH activity relationship is shown in the Fig. 3.1.
53
Activity
pH
Fig. 3.1 The pH activity relationship
3.5.2 Temperature
Rise in temperature causes increase in the rate of enzyme catalysed
reactions up to a certain temperature i.e about 45°C. Above which the
activity declines due to denaturation of enzymes (due to their protein
nature). As the enzyme is denatured and inactivated, the reaction which
it catalyses slows down and ultimately stops. So the temperature at
which the enzyme shows maximum activity is known as optimum
temperature. The optimum temperature of most of the enzymes is found
to be 37°C. The relationship of enzyme activity to temperature is shown
below in Fig. 3.2:
Maximum activity
Activity
Optimum temperature
Temperature °C
Fig. 3.2 The temperature activity relationship
54
3.5.3 Substrate concentration
With a fixed amount of enzyme, the reaction rate is proportional to
the concentration of substrate. But this is true upto a certain concentration
after which the increase in concentration of substrate does not further
increase the velocity of the reaction.
Since the number of active sites on an enzyme molecule are limited,
a stage will come when all of them have filled with the substrate
molecules. This is known as saturation of enzyme. Now, since none of
the active sites of the enzyme is free, further addition of the substrate
molecule will not increase the product formation (Fig.3.3).
Saturation point
Fig.3.3 Substrate concentration - activity relationship

It was Michaelis and Menten in 1913, who proposed a successful
explanation for the effect of substrate concentrtaion on the enzyme
activity. According to them the enzyme ‘E’, and the substrate ‘S’
combine rapidly to form a complex, the enzyme substrate complex
‘ES’. The complex then breaks down relatively, slowly to form the
product of the reaction. The enzyme regenerated can involve in another
round of catalysis.
E+S ES
ES E+P
55
3.5.4 Effect of activators
Divalent ions, like Mg2+, Cu2+, Mn2+, Zn2+ and monovalent ions
such as Na+ and K+ are required for the activity of many enzymes. For
example, amylases need Cl- ions, Zn2+ ions are required for carbonic
anhydrase action, Fe2+ and Cu2+ ions are required for enzymes involved
in redox reactions. Several peptidases are activated by Mn2+, Zn2+ or
Co2+. Enzymes requiring metal ions or enzymes which contain metal
ions in their structure are called as metallo enzymes.
3.5.5 Effect of concentration of enzyme
The velocity of an enzymatic reaction is directly proportional to the
concentration of enzyme. In case the enzyme concentration is doubled
then as much as twice active site become available to combine with the
substrate, provided an excess of substrate is present and so the
maximum velocity is also doubled. At a fixed concentration of the
substrate a level is reached when all the substrate molecules are utilised
and no more change in velocity of the reaction takes place (Fig. 3.4).
Enzyme concentration (E)

Fig. 3.4 Enzyme concentration - activity relationship
3.5.6 Inhibitors
Chemical substances which reduce the activity of enzymes are called
as inhibitors. They may be small inorganic ions such as cyanide which
inhibits the enzyme cytochrome oxidase or much more complex
56
molecules such as diisopropyl phospho fluoridate which inhibit acetyl
choline esterase.
This phenomenon in which the enzyme activity is decreased by the
presence of inhibitors is known as enzyme inhibition.
Types of enzyme inhibition
Enzyme inhibition may be of different types such as (a) competitive
(b) uncompetitive (c) non-competitive and (d) allosteric inhibition.
3.5.6.1 Competitive inhibition
This type of inhibition occurs when the structure of inhibitor
resembles that of the substrate. The inhibitor competes with the proper
substrate for binding at the active site of the enzyme. In this type of
inhibition, both ES complex and EI complex (enzyme - inhibitor
complex) are formed during the reaction. The relative amounts of the
two complexes depend partly upon the affinity of the enzyme towards
the substrate and inhibitor and partly upon the relative concentration of
substrate and the inhibitor. Thus if the inhibitor is present in sufficiently
high concentration, it can displace the substrate entirely and thus blocks
the reaction completely (Fig.3.5).
E+S ES
+
I EI + P EI = enzyme inhibitor complex
COOH COOH
CH2 succinate CH
dehydrogenase
CH2 CH
COOH COOH
Succinic acid Fumaric acid
57
Succinate dehydrogenase catalyses the conversion of succinic acid
to fumaric acid.
Fig. 3.5 Mode of action of competitive inhibitor

This reaction is completely inhibited by malonic acid which has
structural resemblence with succinic acid.
COOH
CH 2
COOH - a competitive inhibitor of succinate dehydrogenase

Malonic acid
This type of inhibition can be reduced by increasing the

concentration of the substrate and for this reason competitive inhibition
is called as reversible inhibition. Many competitive inhibitors are used
as drugs to block particular metabolic reactions.
3.5.6.2 Uncompetitive inhibition
In this type of inhibition, the inhibitor combines with enzyme -
substrate complex to give an inactive enzyme - substrate - inhibitor
complex which cannot undergo further reaction to yield the product
(Fig. 3.6).
58
E+S ES E+P
+
I ESI P
In this type, the degree of inhibition may increase when the substrate
concentration is increased. This inhibition cannot be reversed by
increasing the concentration of substrate.
Fig. 3.6 Mode of action of uncompetitive inhibitor
3.5.6.3 Non competitive inhibition

In this type of inhibition, the inhibitor can combine with either the
free enzyme or the enzyme substrate complex, interfering with the action
of both. Non competitive inhibitor bind to the site on the enzyme other
than the active site, often to deform the enzyme, so that it does not
form the ES complex at its normal rate and once formed, the ES complex
does not decomposes at the normal rate to yield products. These effects
are not completely reversed by increasing the substrate concentration
(Fig. 3.7).
59
E+I EI P
+
S ES + I ESI P
E+P
Fig. 3.7 Mode of action of non-competitive inhibitor

Examples
a. Effect of iodoacetamide on - SH group containing enzymes
b. Effect of diisopropyl phosphofluoridate on acetyl choline esterase.
These two inhibitors completety inactivate the respective enzymes.
This inhibition can be partially reversible.
3.5.6.4 Allosteric inhibition
This type of inhibition is otherwise known as end product inhibition.
The inhibitor binds with the modulator binding site (or) allosteric site of
60
the enzyme. The inhibitor present at the allosteric site may affect the
conformation at the active site with the result it becomes difficult for the
enzyme to take up the substrate molecule, and in the extreme case, the
enzyme completely fails to take up the substrate molecule (Fig. 3.8).
Fig.3.8 Mode of action of allosteric inhibitor

This type of inhibition is seen in multistep reactions in which each
step is catalysed by different enzymes as shown below.
a b c d
A B C D E . . . . .. . . .. . . P
where A is the starting substrate B,C,D,F are intermediates, a,b,c,d
are enzymes and P the product. When the product concentration (P)
increases, it binds with the enzyme ‘a’ which is the first enzyme in the
reaction sequence. This enzyme which can be inhibited by the end product
is known as allosteric enzyme.
Example
Threonine
L-Threonine α− keto butyrate + NH3
Intermediates Isoleucine
(A) deaminase (a) (B)
(C,D,E)
P
x
61
when isoleucine production increases, as a regulatory mechanism, it
binds with threonine deaminase in the allosteric site and inhibit further
binding of the substrate with the enzyme and ultimately production of
isoleucine is stopped. This inhibition is otherwise known as feed back
inhibition.
Many metabolic reactions in our body are regulated by means of
allosteric enzymes.
3.6 Iso enzymes
Certain enzymes may exist in two or more forms which have the
same catalytic activity but are distinct physically, chemically and
electrophoretically. These forms exist in different tissues.
Example
a. Lactate dehydrogenase exist in 5 different iso enzymic forms
LD1, LD2, LD3, LD4, LD5 and perform the same function
of the conversion of lactate to pyruvate. LD1 is predominant
in heart and LD5 in muscle and liver.
b. Creatine kinase exist in 3 different iso enzymic forms BB,
MM and MB. These isoenzymes perform the same function
of conversion of creatine to creatine phosphate.
BB form exist in brain, MM form in muscle and MB form in
heart.
3.7 Importance of enzymes
1. Enzymes catalyse many biological reactions and enhance the
rate of product formation in metabolic pathways.
2. Some enzymes in blood are used as diagnostic indicators of
various diseases. For example the level of transaminases are
elevated in blood during jaundice - a liver disorder.
3. Some enzymes are used for therapeutic purposes
62
a. Penicillinase - to treat patients allergic to penecillin
b. Asparaginase - to treat leukemia
c. Diastase - to treat indigestion
Excercise
a. Amylases act on
i. Starch ii. Lactose iiii. Sucrose iv. Glucose
b. The catalytic groups of lysozyme are
i. Glutamic acid ii. Aspartic acid
iii. Glutamic acid and Aspartic acid iv. Histidine
c. Fumarase belong to the major class of
i. Oxidoreductases ii. Transferases
iii. Hydrolases iv. Ligases
d. Cl- ions act as activators of
i. Amylases ii. Peptidases
iii. Glycosidases iv. Lipases
e. The different morphological structures of the same enzyme are
called as
i. Apoenzymes ii. Isoenzymes
iii. Coenzymes iv. Holoenzymes
a. A holoenzyme contains apoenzyme and ____________
b. The structural resemblence of substrate and inhibitor leads to
______________ inhibition.
c. The termperature at which the enzyme shows maximum activity
is known as _____________
63
d. Allosteric enzymes posses an extra _________ site.
e. Cytochrome oxidase belong to the major class of ________.
a. Holo enzymes are complete and active enzymes.
b. Active sites are essential for enzyme action.
c. Competitive inhibition is reversible
d. Metal ions can activate enzymes.
e. Modulator binding sites are present in all the enzymes.
1. Alkaline phosphatase - Non protein part of the enzyme
2. Coenzymes - Hydrolase
3. Allosteric inhibitor - Enzyme activator
4. Zn2+ - Malonate
5. Succinate dehydrogenase - Feed back inhibition
a. What is a coenzyme?
b. What are the catalytic amino acids of chymotrypsin?
c. How is competitive inhibition prevented?
d. Who proposed induced fit theory?
e. What is the action of ligases?
VI. Answer the followings
a. Explain the major classes of enzymes.
b. What are catalytic aminoacids? Give examples.
c. Explain allosteric inhibition with an example.
d. Write a note on the factors affecting enzyme activity.
e. Differentiate the action of competitive, uncompetitive and non
competitive inhibitors.
64
CHAPTER 4
CARBOHYDRATES
4.1 Introduction
Carbohydrates are widely distributed in plants in which they are
formed from carbon dioxide of the atmosphere and water by
photosynthesis. Plants use carbohydrates as the precursor for the
synthesis of proteins, lipids and other organic compounds. Animals
obtain their carbohydrates from plants.
4.2 Functions of carbohydrates
Carbohydrates have a variety of functions in the animal and human
body.
1. They supply energy for body functions and for doing work.
2. They are structural components of many organisms.
3. They exert a sparing action on proteins.
4. They provide the carbon skeleton for the synthesis of some non-
essential amino acids and fats.
5. Some carbohydrates are present as tissue constituents.
6. Starch forms main source of carbohydrates in the diet.
4.3 Classification of carbohydrates
Carbohydrates are classified as follows
They are i. Monosaccharides ii. Disaccharides iii. Oligo saccharides
and iv. Polysaccharides (Fig. 4.1).
65
Carbohydrates
Monosaccharides Disaccharides Oligosaccharides Polysaccharides
Aldose Ketose eg. Malto triose

Homo Hetero
eg. Glucose eg. Fructose Reducing Non-
eg. Lactose reducing eg. Starch, eg. Heparin
Maltose eg. Sucrose Cellulose
Fig. 4.1 Classification of Carbohydrates
4.3.1 Monosaccharides
Monosaccharides are defined as polyhydroxy aldehydes or
ketones, which cannot be further hydrolysed to simple sugars.
Monosaccharides are divided into two groups according to their
functional groups (Fig. 4.2).
Monosaccharides
Aldose Ketose
(CHO group) (CO group)
Fig. 4.2 Classification of monosaccharides
They are also classified based on the number of carbon atoms

present in the monosaccharides
66
1. Aldotriose eg: Glycerose 1. Ketotriose :eg.Dihydroxy acetone
2. Aldotetrose eg : Erythrose 2. Ketotetrose : eg : Erythrulose
3. Aldopentose eg : Ribose 3. Ketopentose : eg. Ribulose
4. Aldohexose eg: Glucose 4. Ketohexose : eg. Fructose
1. Aldoses are sugars containing aldehyde group
eg : glucose, galactose, mannose.
2. Ketoses are sugars containing ketone group
eg : fructose and sorbose.
Carbohydrates posses asymmetric carbon atoms. A carbon atom
to which four different atoms or groups of atoms are attached is said to
be an asymmetric carbon.
CHO
HO C* H
CH2 - OH
C* - Asymmetric carbon
Vant Hoff’s Rule of ‘n’
The number of possible isomers of any given compound depends
upon the number of asymmetric carbon atoms the molecule posses.
According to this rule, 2n equals the possible isomers of that
compound, where n - represents the number of asymmetric carbon
atoms in a compound.
4.3.1.1 Hexoses
Hexoses are monosaccharides containing 6 carbon atoms. The
molecular formula of hexose is C6H12O6. Aldohexoses contain
asymmetric carbon atoms at position 2,3,4 and 5. Hence an
aldohexose can exist in 16 isomeric forms. (2n = 24 = 16).
67
The ketohexoses contain 3 asymmetric carbon atoms at position
3,4 and 5. Hence, it exist in 8 isomeric forms (2n = 23 = 8).
Structure of glucose and fructose
Glucose is a simple sugar. It is a monosaccharide. It cannot be
hydrolysed further. Glucose is an important sugar of blood.
Human blood contains 60-100 mg of glucose in 100 ml of blood
in fasting. It serves as the major metabolic fuel in cells and tissues.
Oxidation of glucose quickly provides energy for the cells.Hence,
glucose is described as the chief source of energy.
i. The empirical formula of glucose is CH2O and the molecular
formula is C6H12O6. The molecular formula of fructose is
C6H12O6 . Glucose has aldehyde group whereas fructose has
ketone group.
H C O CH2 OH
H C OH
C O
HO C H HO C H
H C OH H C OH
- H C OH H C OH
CH 2 OH CH2 OH
Glucose Fructose
4.3.1.2 Physical properties of monosaccharides

1. Colour and shape
Monosaccharides are colourless and crystalline compounds.
2. Solubility
They are readily soluble in water.
3. Taste
They have sweet tase.
68
4. Stereo isomerism
The presence of asymmetric carbon atoms in a compound give
rise to the formation of isomers of that compound. Such compound
which are identical in composition and differs only in spatial configuration
are called “stereo isomers’’. For example glucose can exist in two
forms as shown below.
O O
1C H H 1C
H 2C OH HO C H
2
HO C H H C OH
3 3
H C OH HO
4 4C H
H C OH HO C H
5 5
CH 2 OH CH 2 OH
6 6
D-Glucose L-Glucose
D-glucose and L-glucose are mirror images of each other.

D-series and L-series
The orientation of the H and OH groups around the carbon atom
just adjacent to the terminal primary alcohol carbon, eg. C5 in glucose
determines the series. The D and L forms of glyceraldehyde are given
below.
CHO CHO
2
2 HO
H C OH C H
1 1
CH2 - OH CH2 - OH
D-Glyceraldehyde L-Glyceraldehyde
when the -OH group of this C2 is at the right, it belongs to D-series,
when the -OH group is on the left it belongs to L-series.
69
5. Optical Isomerism
A beam of ordinary light may be regarded as bundle of
electromagnetic waves vibrating in all directions perpendicular to the
axis of the beam. When such a beam of light is made to pass through a
nicol prism, all vibrations except those in one plane are eliminated. This
is called as plane polarised light. When such a beam of plane polarised
light is passed through a solution of an optical isomer, and if the plane
polarised light is found to rotate to the left, it is described as levorotation.
If the plane polarised light rotates to an equal number of degrees to the
right, it is described as dextrorotation. This phenomenon exhibited by
asymmetric compounds, is called optical isomerism (Fig. 4.3 & 4.4).
Ordinary light Nicol Prism Plane polarised

oscillations in all light oscillations
directions in one plane of beam
Fig. 4.3 Conversion of ordinary light to plane polarised light
Polarimeter is an instrument by which the specific rotations of optical

isomers are detected.
Plane polarised Before Plane polarised

light-rotated rotation light-rotated
anti clockwise clockwise or
or levorotatory dextrorotatory
Fig. 4.4 Rotation of plane polarised light
70
Expression of optical activity
Optical rotation to the left i.e levorotation is expressed with a
sign of l- and rotation to the right i.e dextrorotation is expressed as d+.
Racemic mixture
When equal amounts of dextrorotatory and levorotatory isomers
are present, the resulting mixture has no optical activity, since the activities
of isomers cancel each other. Such a mixture is said to be a “racemic
mixture”.
Resolution
The separation of optically active isomers from a racemic mixture
is called resolution.
6. Mutarotation
When an aldohexose is first dissolved in water and the solution is
kept in optical path and plane polarised light is passed, the initial optical
rotation shown by the sugar gradually changes until a constant fixed
rotation characteristic of the sugar is reached. This phenomenon of
change of rotation is called as “Mutarotation”.
H OH HO H
C H C O C
H C OH H C OH H C OH
HO C H HO C H HO C H O
O
H C OH H C OH H C OH
H C H C OH H C
CH 2 OH CH 2 OH CH 2 OH
α D - Glucose D-Glucose β D- Glucose

Chain form
+ 112.2° +52.7° + 18.7°
71
The mutarotation is due to the existence of two optical isomers of
glucose, namely α, D glucose with a specific rotation +112.2° and
β, D glucose with a specific rotation +18.7°.
α and β isomers are called as anomers and the carbon atom
responsible for this is the anomeric carbon atom. Anomers are isomers
differing in configuration of a particular carbon atom alone.
A freshly prepared aqueous solution of α, D glucose has a specific
rotation of +112.2°. When this solution is allowed to stand, the rotation
falls to 52.7° and remains constant at this value. This gradual change in
specific rotation is called mutarotation.
The value of mutarotation for α, D-glucose is +59.5°.
(+112.2°) - (52.7°) = +59.5°.
A freshly prepared solution of β, D glucose has a rotation value of
18.7°. It also gradually increases and reaches the same final value of
+ 52.7°.
4.3.1.3 Chemical properties of glucose
Glucose contain active groups. The active groups are responsible
for their chemical properties. There are three types of active groups in
glucose. They are
1. Glycosidic -OH group
2. Alcoholic -OH group
3. Aldehyde - C-H group
O
1. Glucoside formation
Glucose reacts with methanol in the presence of HCl and gives α
and β glucoside. Glucoside formation is due to the reaction of alcohol
with glucoside -OH group of glucose.
72
H C OH H C OCH 3
H C OH H C OH
HCl gas
HO C H O CH 3 -OH HO C H O + H 2O
Methyl alcohol H C OH
H C OH
H C H C
CH 2 OH
CH 2 OH
α - D methyl glucoside
α - D glucose
β, D glucose is forms β, D-methyl glucoside. In the same way,

fructose forms fructoside.
2. Oxidation
Glucose when treated with bromine water, forms gluconic acid.
The aldehyde group is oxidised to carboxylic group.
Br2 + H2O HOBr + HBr
First, bromine forms hypobromous acid (HOBr), with water and
oxidises the glucose to gluconic acid.
H C O COOH
H C OH H C OH
HO C H HOBr HO C H
H C OH H C OH
H C OH H C OH
CH2 OH CH2 OH
D-Glucose D-Gluconic acid
73
When glucose is oxidised with nitric acid, saccharic acid is formed.
CHO COOH
H C OH H C OH
HO C H HNO3 HO C H
H C OH H C OH
H C OH H C OH
CH2 OH COOH
D-Glucose Saccharic acid
When glucose is oxidised with hydrogen peroxide (H2O2),

glucuronic acid is formed.
CHO CHO
H C OH H C OH
HO C H H2 O 2 HO C H
H C OH H C OH
H C OH H C OH
CH 2 OH COOH
D-Glucose Glucuronic acid
In this reaction only the primary alcohol is converted into carboxylic

group, whereas the aldehyde remains unchanged.
3. Reduction
Monosaccharides can be reduced by various reducing agents such
as sodium-amalgam or by hydrogen under high pressure in the presence
74
of catalysts. The reduction is due to the presence of aldehyde or ketone
group. On reduction they yield alcohols.
CHO CH2-OH
H C OH H C OH
HO C H HO C H
Na - Hg
H C OH H C OH
H C OH H C OH
CH2 OH CH2 OH
D-Glucose Sorbitol
CH 2 -OH CH 2 -OH CH 2 -OH

H C OH HO C H
C O
C H HO C H HO C H
HO
Na - Hg
H H C OH + H C OH
C OH
H C OH H C OH
H C OH
CH 2 OH CH 2 OH CH 2 OH
D-Fructose Sorbitol Mannitol
When glucose is reduced by sodium amalgam, sorbitol is formed.

Mannose yeilds mannitol and fructose yeilds a mixture of sorbitol and
mannitol because of the formation of new asymmetric carbon C2 of
fructose.
4. Reaction with concentrated H2SO4
Glucose is treated with concentrated H2SO4 or HCl, and forms 5,
hydroxymethyl furfural which on further heating yields levulinic acid and
formic acid.
75
CHO CHO
H C OH C
HO C H CH
Conc H2SO4 O Levulinic acid
H C OH CH +
Formic acid
H C OH C +
CO + CO2
CH2 OH CH2 OH
D-Glucose
5-hydroxy methyl furfural
This reaction is the basis of the colour test, known as Molish test
for sugars. When pentoses are treated with mineral acids furfural is
obtained on heating.
5. Ester formation
They can form esters with carboxylic acids due to the presence of
OH groups. For eg. glucose reacts with five molecules of acetic anhydride
to form penta acetate derivative. It obviously indicates that the glucose
contain five OH groups.
CHO
CHO
H C O C CH3
H C OH
CH3 C O C H O
HO C H O +5H2O
5(CH3CO)2O H C O C CH3
H C OH O
H C O C CH3
H C OH O
CH2 O C CH3
CH2 OH
O
D-Glucose
D-Glucose penta acetate
76
6. Reducing property
Monosaccharides act as the best reducing agents. They readily
reduce oxidizing agents such as ferric cyanide, H2O2 and cupric ion. In
such reactions, the sugar is oxidized at the carbonyl group and the
oxidising agent becomes reduced.
Glucose and other sugar capable of reducing certain compounds
are called reducing sugars. Glucose reduces Tollen’s reagent, Fehling’s
reagent, Benedict’s reagent etc. At the same time glucose is oxidized to
gluconic acid.
H C O COOH
H C OH H C OH
2Cu 2+ 2Cu +
HO C H HO C H
H C OH H C OH
H C OH H C OH
CH 2 OH CH 2 OH
This property is the basis of Fehling’s reaction (ammoniacal cupric

sulphate), a qualitative test for the presence of reducing sugar.
Cu2+ is reduced into Cu+ and at the same time glucose is oxidised
to gluconic acid. During this reaction the blue colour of the reagent
changes to reddish orange colour. Benedict’s reagent contains cupric
ions which are reduced to cuprous ions by the reducing sugar and the
colour change from blue to orange or red. It indicates the presence of
reducing sugar.
A standard test for the presence of reducing sugar is the reduction
of Ag+ in ammonia solution (Tollen’s reagent) to yield a metallic silver
mirror lining on the sides of the test tube.
77
Tollen’s reagent
D-glucose D-Gluconic acid + silver mirror
H C O COOH
H C OH H C OH
2Ag + 2Ag
HO C H HO C H
H C OH H C OH
H C OH H C OH
CH 2 OH CH 2 OH
7. Reaction with alanine

The aldehyde group of glucose condenses with the amino group of
alanine to form Schiff’s base. Fructose also gives Schiff’s base with
alanine.
CH3 CH3
H C O + H2N C H H C N C H
H C OH COOH H C OH COOH
HO C H Alanine HO C H
H C OH H C OH + H2O
H C OH H C OH
CH2 OH CH2 OH
D-Glucose Schiff's base
The browning reaction occurs during baking of bread and other

mixtures of carbohydrates and proteins is believed to be due to the
formation of Schiff’s base between the amino groups of proteins and
the aldehyde groups of carbohydrates.
78
8. Osazone formation
An important reaction of reducing sugars, (monosaccharide and
disaccharrides) having potential aldehyde or ketone group, is their action
with phenylhydrazine to form phenyl hydrazones.
Reaction with phenylhydrazine involves only 2 carbon atoms namely
the carbonyl carbon atom and the adjacent one.
The steps involved in phenylhydrazine reactions are
1. One molecule of glucose condenses with one molecule of phenyl
hydrazine to form soluble glucose phenylhydrazone.
CH O + H2N NH C6H5 CH N NH C6H5
H C OH H C OH
(CHOH)3 (CHOH)3 H2O
CH2 OH CH2 OH
D-Glucose D-Glucose phenyl hydrazone
2. In the presence of excess of phenylhydrazine, another molecule of

phenylhydrazine enters the reaction.
HC N NH C6H5 HC N NH C6H5
HC OH + H2N NH C6H5 C O
(CHOH)3 (CHOH)3 NH2 + NH3
Ammonia
CH2 OH CH2 OH C6H5
Aniline
D-Glucose phenyl hydrazone
3. Now the third molecule of phenylhydrazine enters the reaction,

giving rise to phenyl glucosazone which are yellow coloured crystals.
79
The shape of the crystals and the time of formation of osazone
differ for various sugars.
HC N NH C 6H 5 HC N NH C 6H 5
C O + H 2N NH C 6H 5 C N NH C 6H 5
(CHOH) 3 (CHOH) 3 H 2O
CH 2 OH CH 2 OH
Phenyl gucosazone
The reaction of phenyl hydrazine with fructose is similar to glucose.

Here again 3 molecules of phenyl hydrazine take part in the reaction.
Fructose gives fructosazone. Disaccharides such as maltose and lactose
also exhibit the property of osazone formation. But, sucrose does not
form osazone, since it does not contain free CHO or CO groups which
are responsible for the reducing property.
9. Fermentation
Fermentation is the process of converting a larger complex molecule
into simple molecules by means of enzymes in an anaerobic condition.
The products of the reaction are alcohol and CO2.
Glucose Zymase 2C2H5OH + CO2
Ethyl alcohol
10. Epimerisation
Two sugars which differ from one another only in configuration
around a single carbon atom are termed “epimers”
eg : Glucose and mannose are epimers in respect of C2. Glucose and
galactose differ only with respect to C4. The process by which one
epimer is converted to other is called as epimerization and it requires
the enzyme epimerases in the living organisms. Galactose is converted
to glucose by this manner in our body.
80
CHO 1
CHO CHO
1 1
H C OH HO C H H C OH
2 2 2
HO C H HO C H HO C H
3 3
H C OH H C OH HO C H
4 4 4
H C OH H 5
C OH H C OH
5 5
CH 2 OH 6
CH 2 OH 6
CH 2 OH
6
Glucose Mannose Galactose
4.3.1.4 Haworth projection formula of glucose and fructose

According to Haworth, glucose exists in six membered ring
structure called pyranoform (Fig.4.5) and fructose in five membered
furano form. (Fig. 4.6)
OH H
1. Glucose
H C HO C
H C OH H C OH
HO C H O HO C H O
H C OH H C OH
H C H C
CH 2 OH CH 2 OH
α D - Glucose β D- Glucose
CH 2-OH CH 2-OH
H O H H O OH
H H
OH H OH H
OH OH OH H
H OH H OH
α D - Glucopyranose β D - Glucopyranose
Fig. 4.5 Pyranose structure of glucose
81
2. Fructose
CH2 OH CH2 OH
OH
C HO C
HO C H O HO C H O
H C OH H C OH
H C H C
CH2 OH CH2 OH
α D - Fructose β D - Fructose
O O OH
HO CH2 H2C OH HO CH2
OH H OH
H
OH OH OH CH2 OH
OH H OH H
α D - Fructofuranose β D - Fructofuranose
Fig. 4.6 Pyranose structure of fructose
4.3.2 Disaccharides
Disaccharides are sugars containing two molecules of
monosaccharides. Disaccharides are formed by the condensation of
two molecules of monosaccharides with the elimination of one molecule
of water.
In disaccharides, monosaccharides are linked by the glycosidic
bonds. The properties of the disaccharides depend to a great extent on
the type of linkage. If the two potential aldehyde or ketone of both
monosaccharides are involved in the linkage, the sugar will not exhibit
82
reducing properties and will not be able to form osazones. eg. Sucrose.
But if one of them is not bound in this way, it will permit reduction and
osazone formation by the sugars eg. lactose and maltose which are
known as reducing disaccharides.
4.3.2.1 Maltose
Maltose is composed of two glucose molecules combined by
α− 1,4 glycosidic linkage. It is commonly called malt sugar. Malt from
sprouting barley is the major source of maltose. It is a rather sweet
sugar and is highly soluble in water.
OH
H C H C
H C OH H C OH
HO C H O HO C H O
H C O H C OH
H C H C
CH2 OH CH2 OH
α D - Glucose (1) α D - Glucose (2)
(α 1,4 glycosidic linkage)

The structure of maltose shows that the potential aldehyde group
of glucose -2 is blocked in the glycosidic linkage, whereas the potential
aldehyde group of glucose -1 is free and can reduce alkaline copper
solution. It is because of this free aldehyde in the first glucose molecule,
maltose has reducing property.
Metabolism
Maltose is the end product of digestion of starch by the action of
salivary amylase, in the mouth and pancreatic amylase in the intestine.
Maltose is formed as an intermediate product in the intestine. Maltose
83
is split into two molecules of glucose by the enzyme maltase of the
intestinal juice before absorption.
4.3.2.2 Lactose
Lactose is commonly called as milk sugar. It is present in the milk
of mammals. However lactose is found in the urine of pregnant and
lactating women. It is less soluble in water and less sweeter than sucrose.
HO H
C C H
H C OH H C OH
OH C H O OH C H
O O
H C OH OH C H
H C H C
CH2-OH CH2-OH
β D-glucose β D-galactose
(β 1-4 glycosidic linkage)
Just as in maltose, lactose has a free potential adehyde group in the

glucose molecule, not involved in the glycosidic linkage between glucose
and galactose molecules. Whereas, the potential aldehyde group of
galactose molecule is blocked in the linkage. Because of the presence
of free aldehyde group in the glucose molecule, lactose can reduce
Fehling’s solution and is therefore a reducing sugar.
Metabolism
When lactose is hydrolysed by acids or by the enzyme lactase,
one molecule of glucose and one molecule of galactose are formed.
The intestine of milk sucking infants has the enzyme lactase, which
converts lactose into glucose and galactose. Then only it is absorbed in
the body. Excess of lactose ingested into the body causes diarrhoea,
84
abnormal intestinal flow and colic pain. Lactose is not fermented by
yeast.
4.3.2.3 Sucrose
Sucrose is ordinary “table sugar”. It is also called as “cane sugar”
as it can be obtained from sugar cane. It is widely distributed in sugar
cane, beet root, pine apple, honey, carrot and ripe fruits.
O
H α
C CH2-OH
β
H C OH C
HO C H O HO C H
H O
H C OH C OH
H C H C
CH2-OH CH2-OH
α D-glucose β D-fructose
(α,β 1-2 glycosidic linkage)
Sucrose consists of one molecule of glucose and one molecule of

fructose. The linkage between these molecules are formed between
the aldehyde group of glucose and the ketone group of fructose. Thus,
both the potential aldehyde group of glucose and the ketone group of
fructose are blocked in the linkage and sucrose has no free reducing
group. On account of this structural peculiarity sucrose is a non-reducing
sugar. It does not reduce Tollen’s and Fehling’s solutions and does not
form osazone.
Metabolism
Sucrose on hydrolysis by dilute acids or the enzyme sucrase or
invertase gives a mixture of glucose and fructose. It is called as invert
sugar.
85
Inversion
Sucrose is dextrorotatory (+62.5°) but it’s hydrolytic products are
levorotatory because fructose has a greater specific levo-rotation than
the dextrorotation of glucose. As the hydrolytic products inverts the
rotation, sucrose is known as invert sugar and the process is called as
invertion. Honey contains plenty of ‘invert sugar’ and the presence of
fructose accounts for the greater sweetness of honey.
4.4 Poly saccharides
Polysaccharides, which are also known as glycans composed of
number of monosccharide units. They represent condensation products
of several molecules of simple sugars or monosaccharides.
Monosaccharides are linked together by glycosidic bonds in
polysaccharides. They form linear chain or branched chain molecules.
They contain only one type of monosaccharide units or many types of
monosaccharide units. According to this nature polysaccharides are
classified into two groups, homopolysaccharides and
heteropolysaccharides.Po
Homopolysaccharides are composed of only one type of
monosaccharides. On hydrolysis they yield only one type of
monosaccharides Eg. starch, glycogen, cellulose etc. which yield only
glucose on hydrolysis.
Heteropolysaccharides are composed of a mixture of
monosaccharides. On hydrolysis, they yield a mixture of
monosaccharides. Eg. Hyaluronic acid, Heparin, Mucopolysaccharides.
4.4.1 Starch
This is the storage form of carbohydrate present in plants. They
are abundantly found in root, stem, vegetables, fruits and cereals. The
bulk of our diet which consists mainly of rice, wheat and vegetables is
a good source of starch.
86
Potato Rice Wheat
Fig. 4.7 Starch grains under microscope
Starch occurs in the forms of grain which may be spherical or oval

in shape. Microscopically, the starch grains are found to differ in size
and shape according to their sources (Fig.4.7).
Starch is made up of two structurally different homopolysaccharide
units. They are amylose and amylopectin.
In amylose, glucose molecules are arranged in a linear form. Glucose
molecules are arranged in a highly branched form in amylopectin.
CH 2 -OH CH 2 -OH
H O H H O H
H H H H
OH 1 4 OH
O O
O
OH OH OH OH
n
F ig . 4 .8 S t r u c t u r e o f A m y lo s e ( α 1 - 4 g ly c o s id ic lin k a g e )
Amylose has 1,4 glycosidic linkages. The glycosidic - OH group

of C1 in one glucose unit is joined to that of C4 of the next unit (Fig 4.8).
87
CH2-OH CH2OH
H O H H O H
H H H
4 OH H 1
OH 1
O O O α 1-6 branch point
6
OH OH CH2-OH H OH CH2
H H 5 H
H O O
H H H
4 OH H 1 4 OH 1
Main chain O O O
3 2 n
H OH H OH
Fig. 4.9 Structure of Amylopectin (α 1-4 and α 1-6 glycosidic linkages)
The glucose unit present at each point of branching has subtituents at

carbon atoms 1,4 and 6 i.e it has three points of attachment (Fig.4.9).
Reaction of starch with iodine
A solution of starch react with iodine to give blue colour. The blue
colour formation is mainly due to the presence of amylose in starch.
Table 4.1 Difference between Amylose and Amylopectin
Amylose Amylopectin
1. It has a simple unbranched It has branched chain

structure structure
2. It is soluble in water It is insoluble in water, can
absorb water and swells up.
3. It has α, 1-4 glycosidic It has α, 1-4 glycosidic and
linkages α, 1-6 glycosidic linkages
4. Gives blue colour with dilute Gives yellow or orange
iodine solution colour with iodine solution
5. The molecular weight ranges The molecular weight ranges
from 10,000 -50,000 from 50,000 - One million
88
4.4.1.1 Starch digestion occurs in stages
Digestion of starch, the main carbohydrate source in the human
diet, begins in the mouth. Saliva contains α amylase, which randomly
hydrolyses all the α, 1-4 glycosidic bonds of starch except its outer
most bonds and those next to branches.By the time thoroughly chewed
food reaches the stomach, where the acidity inactivates α-amylase, the
average chain length of starch has been reduced from several thousand
to fewer than eight glucose units.
Starch digestion continues in the small intestine under the influence
of pancreatic amylase which is similar to salivary amylase. This enzyme
degrades starch to a mixture of disaccharide maltose and the
trisaccharide maltotriose. These oligosaccharides are hydrolysed to their
component monosaccharides by specific enzymes persent in the brush
border membranes of the intestinal mucosa. The resulting
monosaccharides are absorbed in the intestine and transported to the
blood stream.
4.4.2 Glycogen
Glycogen is a homopolysaccharide since it gives only glucose units
on hydrolysis. It is the major reserve carbohydrate in animals. Glycogen
is present in all cells of skeletal muscle and liver and occur as cytoplasmic
granules. Among plants, it is found in fungi and yeast. Primary structure
of glycogen resembles that of amylopectin but glycogen is more highly
branched, with branch points occurring every 8 to 12 glucose residues
(Fig. 4.10). Glycogen is readily available as immediate source of energy.
During starvation glycogen is mobilised from the storage tissue and
converted to glucose by the enzyme glycogen phosphorylase. Glucose
formed like this is oxidised to produce energy. The degree of branching
is considerably more in glycogen when compared to starch.
89
CH2-OH CH2OH
H O H H O H
(Main chain) H H H
4 OH H 1
OH 1
O O O α 1-6 linkage
6 (Branch point)
OH OH CH2-OH H OH CH2
H H 5 H
H O O
H H 1 4 OH H 1
4 OH
O O O
3 2 n
H OH H OH
α 1-4 linkage
Braching
sites
Main Chain
Fig. 4.10 Structure of glycogen
Formation of glycogen from glucose is called as Glycogenesis

and breakdown of glycogen to form glucose is called as Glycogenolysis.
90
Excercise
a. Glycogen is a
i. Monosaccharide ii. Disaccharide
iii. Homopolysaccharide iv. Heteropolysaccharide
b. Sucrose is a
i. Ketose sugar ii. Aldose sugar
iii. Dissaccharide iv. Polysaccharide
c. Glucose is oxidised by nitric acid and produce
i. Sorbitol ii. Saccharic acid
iii. Furfural iv. Glucuronic acid
d. The number of phenyl hydrazine molecules required for 1
molecule of glucose osazone formation is
i 1 ii. 2 iii. 3 iv. 4.
e. Iodine gives blue colour with
i. Glucose ii. Lactose
iii. Starch iv. Heparin
f. Starch is converted to maltose and dextrin by the enzyme.
i. Lipase ii. Protease
iii. Amylase iv. None of the above.
a. Starch is composed of amylose and ---------------
b. --------------------- is known as animal starch.
c. Glucose on reduction with sodium amalgam produce -----------
d. Mannose is an epimer of ---------------
e. Epimerisation reaction is catalysed by the enzyme --------------
f. Specific rotation of a optical isomer can be detected by --------
g. Separation of racemic mixture is called as ---------
91
a. Ribulose is a pentose
b. An aldohexose can exist in 16 isomeric forms.
c. In racemic mixtures d forms do not exist.
d. The basic monosaccharide units of lactose is glucose.
e. Glycogen yield only glucose on hydrolysis.
IV. Match the followings
a. Glycogen - Invert sugar
b. Asymmetric carbon atom- Starch
c. Iodine test - Polysaccharides
d. Sucrose - Animal starch
e. Non sugars - Isomerism
f. Lactose - Maltase
g. Maltose - Milk sugar
V. Give short answer for the following:
a. What is the structural difference between glycogen and starch?
b. What is glycogenolysis?
c. Give the structure of sucrose.
d. What is epimerisation?
e. Mention the reaction between fructose and sodium amalgam.
f. What is racemic mixture?
a. Explain the classification of carbohydrates.
b. What are the functions of carbohydrates?
c. Explain the property of stereoisomerism in monosaccharides
with two examples.
d. What are the reaction sequences of glucosazone formation?
e. Mention the difference between amylose and amylopectin.
f. Explain the mutarotation of glucose.
92
CHAPTER 5
PROTEINS
5.1 Introduction
Proteins are complex organic nitrogenous substances found in
animal and plant tissues. The term protein is derived from Greek :
Proteios means primary or holding first place.
Protein is the essential constituent of living cells. Protein make upto
12% of the protoplasm. They are not only responsible for comprising
the structure of the cell but are concerned with every function of the
cell including those of respiration, catalysis of reactions by enzymes,
transport of materials, regulation of metabolism, and defense actions.
The foods rich in proteins are known as body building foods.
5.2 Sources of protein
Proteins are obtained from animal and plant sources. The animal
sources of proteins include milk, egg, meat, fish, liver etc. Plant sources
of proteins are pulses, nuts and cereals.
5.3 Amino acids
Amino acids are the simplest units of a protein molecule and they
form the building blocks of protein structure. The general formula of an
amino acid can be written as,
H H
R C COOH H C COOH
NH 2
NH 2
G lyc in e
R=H
93
An amino acid is an amino carboxylic acid. R is the side chain or
residue and it represents the group other than -NH2 and -COOH. It
may be a hydrogen atom (H) or a methyl group (-CH3) or an aliphatic
group or an aromatic group or a heterocyclic group. The amino acids
are classified based on the nature of R groups.
D and L amino acids
Based on the position of amino group on the asymmetric carbon
atom, amino acids exist in two types. They are D and L amino acids.
COOH HOOC
H C NH2 H2N C H
CH3 H3C
D form L-Form
Mirror
The amino acid having the NH2 group on the right is called
D-amino acid. The amino acid having the NH2 group on the left is
called L-amino acid. These isomers are the mirror images of each other.
All amino acids are α amino acids because the NH2 group is
attached to the α carbon atom which is next to the COOH group.
Examination of the structure of an amino acid except glycine, reveals
that the α carbon atom has four different groups attached to it, thus
making it asymmetric. Because of the presence of asymmetric carbon
atom, amino acids exist in two optically active forms, dextrorotatory
and levorotatory.
Dextrorotatory, they rotate plane polarised light in the clockwise
direction. Levorotatory, they rotate plane polarised light in the anti
clockwise direction. The direction of optical rotation of an amino acids
indicated by the symbol + and - (+ indicates dextro and - indicate
levo).
94
It has been found that L-amino acids are more common than D
forms and most of the naturally occuring amino acids are L-amino acids.
Therefore L-amino acids are called natural aminoacids. Since the L
amino acids are more common, the letter “L” is usually omitted, while
representing L-amino acids.
Amino acids are widely distributed in plants and animals.
5.3.1 Properties of amino acids
5.3.1.1 Physical properties
Amino acids are coloureless, crystalline, generally soluble in water,
in acid and in alkali but sparingly soluble in organic solvents.
5.3.1.2 Chemical properties
i. Ionic forms of amino acids
Amino acids bear atleast two ionizable weak acid groups, a - COOH
and a -NH2. In solution, two forms of these groups, one charged and
another uncharged, exist in protonic equilibrium:
R-COOH R-COO- + H+
R-NH3+ R-NH2 + H+
R-COOH and R-NH3+ represent the protonated or acidic

partners in these equilibria. R-COO- and R-NH2 are the conjugate
bases of the corresponding acids.
ii. Zwitterion
+
CH3 CH NH3
-
COO
Zwitter ionic structure of alanine
95
Due to the presence of an acidic and a basic group in the same
molecule, the amino acid exists largely as a dipolar ion or a zwitterion,
which can react as an acid as well as a base. In zwitterion, the proton
from the carboxylic group is transferred to the amino group. Thus a
zwitterion carries both positive and negative charges.
+ +
NH3 NH3 NH2
H+ OH -
R CH COOH R CH COO R CH COO
Cation Zwitter ion Anion
In acidic solution an amino acid behave like a protonated derivative

and therefore migrates to the cathode under electric field. In an alkaline
medium, the same amino acid behaves like an anion derivative and
therefore migrates to the anode.
iii. Isoelectric point
The net charge (the algebraic sum of all the positively and negatively
charged groups present) of an amino acid depends upon the pH, or
proton concentration of the surrounding medium.
The pH at which an amino acid bears no net charge and hence
does not migrate to either of the anode or cathode under the influence
of an electric current, is known as the isoelectric point or isoelectric
pH.
iv. Reaction with ninhydrin
Ninhydrin oxidatively decarboxylates an amino acid to CO2, NH3
and an aldehyde. The reduced ninhydrin then reacts with the liberated
ammonia forming a purple complex, which absorbs light at a wavelength
of 570 nm.
96
O
OH
+ NH2 CH COOH
OH
R
O
Ninhydrin Amino acid
OH
+ RCHO + NH3 + CO 2
H Aldehyde Ammonia
O
Hydrindantin
O O
OH OH
+ NH3
+
Ammonia
OH H
O O
Hydrindantin
Ninhydrin
O O
N + 3H2O
H
O O
Purple complex
Fig. 5.1 Reaction of an amino acid with ninhydrin
97
5.3.2 Classification of amino acids
The amino acids are classified based on the nature of their R groups,
in particular their polarity or tendency to interact with water at biological
pH. The polarity of the R groups varies widely, from totally non polar
to highly polar.
5.3.2.1 Non-polar, aliphatic R-group
The R-group in this class of amino acids are non polar (or)
hydrophobic. Six amino acids come under this class, which are glycine,
alanine, valine, leucine, isoleucine and methionine.
CH 3 CH COO -
H CH COO -
NH 3+
NH 3+
Alanine
Glycine
CH 3
CH CH COO - CH 3
CH 3 CH CH 2 CH COO -
NH 3 + CH 3
NH 3 +
Valine
Leucine
CH 3
CH 2 -
- CH 2 CH 2 CH COO
CH CH COO
CH 3 +
S CH 3 NH 3+
NH 3
Methionine
Isoleucine
Glycine has the simplest structure. Methionine is one of the two

sulphur containing aminoacids and has a non polar thio ether group in
its side chain.
98
5.3.2.2 Aromatic R groups
Phenylalanine, tyrosine and tryptophan, with their aromatic side
chains, are relatively non-polar. All can participate in hydrophobic
interactions. The hydroxyl group of tyrosine can form hydrogen bond
with other compounds and it is an important functional group in some
enzymes. Tyrosine and tryptophan are significantly more polar than
phenyl alanine because of the hydroxyl group of tyrosine and the nitrogen
of the indole ring in tryptophan.
CH2 CH COO- HO CH2 CH COO-

NH3+ NH3+
Phenylalanine Tyrosine
-
CH 2 CH COO
NH 3 +
N
Tryptophan
5.3.2.3 Polar-uncharged R groups

The R groups of these amino acids are more soluble in water or
more hydrophilic, than those of the non polar amino acids because they
contain functional groups that form hydrogen bonds with water. This
class of amino acids includes serine, threonine, cysteine, proline,
asparagine and glutamine.
The polarity of serine and threonine is contributed by their hydroxyl
groups; that of cysteine by its sulphydryl (-SH) group; and that of
asparagine and glutamine by their amide groups. Proline has a distinct
cyclic structure and is only moderately polar. Proline has an imino group.
Cysteine is readily oxidized to form a covalently linked dimeric amino
99
acid called cystine, in which two cysteine molecules are joined by a
disulphide bond.
CH 2 CH COO - CH 3 CH CH COO - CH 2 CH COO -

OH NH 3 + OH NH 3 + SH NH 3 +
Serine Threonine Cysteine
H2N C CH 2 CH COO -
+ COO -
N O NH 3 +
H2
Asparagine
Proline
H2N C CH2 CH2 CH COO-

O NH3+
Glutamine
- CH2 CH2 CH COO-

OOC CH S S
NH3+ NH3+
Cystine
5.3.2.4 Positively charged (basic) R-groups

The most hydrophilic R groups are those that are either positively
(-NH3+) or negatively (-C00-) charged. The amino acids in which the R
groups have significant positive charges at pH 7.0 are lysine, arginine
and histidine.
CH 2 CH 2 CH 2 CH 2 CH COO -
NH 3 + NH 3 +
Lysine
100
H N CH 2 CH 2 CH 2 CH 2 CH COO -
+
C = NH 2 NH 3+
NH 2 Arginine
CH 2 CH COO -
NH 3 +
HN NH
+
Histidine
5.3.2.5 Negatively charged (Acidic) R groups

The two amino acids having R groups with a net negative charge at
pH 7.0 are aspartate and glutamate.
- - -
OOC CH 2 CH COO - OOC CH2 CH2 CH COO
+
NH 3+ NH3
Aspartic acid Glutamic acid
Based on their inclusion in the diet, amino acids are classified into
two groups, namely essential amino acids and non-essential amino acids.
5.3.2.6 Essential amino acids
Certain amino acids can not be synthesized by the living organisms.
They must be compulsarily included in the diet for normal health.These
amino acids are called essential amino acids. For human being about
10 amino acids are considered as essential.eg,
1. Arginine 6. Methionine
2. Histidine 7. Phenyl alanine
3. Isoleucine 8. Threonine
4. Leucine 9. Tryptophan
5. Lysine 10. Valine
101
5.3.2.7 Non-essential amino acids
Certain amino acids can be synthesized in the cells from essential
amino acids or from other compounds. So these amino acids need not
be included in the diet. They are called non-essential amino acids.
5.3.2.8 Non protein amino acids
Certain amino acids which do not exist in proteins are called non
protein amino acids eg. Ornithine and β-alanine etc..
5.3.2.9 Peptide bonds
In proteins, amino acids are linked together by linkages called
peptide bonds. The carboxyl group of one amino acid is joined to the
α amino group of another amino acid by a peptide bond.
H H H H
H 2N C C OH + H2N C C OH H 2N C C N
α α C C OH
α
R O R' O R O H R' O
Amino acid Amino acid'
Peptide bond
+H 2O
The peptide bond is also called as the amide bond. The two amino
acids, joined by a peptide bond, constitute a dipeptide. The dipeptide
is formed by simple condensation reaction.
The product formed by a peptide bond is called a peptide. The
compound formed by the linking of three amino acids is called as
tripeptide. A peptide formed of less than 10 amino acids constitute an
oligopeptide. More than 10 amino acids join together to form a
polypeptide chain (Fig. 5.2).
H H R H H R
C N C C N COOH
R C C N C C
H 2N H O H R H
O O
Fig. 5.2 Structure of a polypeptide
102
Protein is made up of one or more polypeptide chains
Many proteins, such as myoglobin, consist of a single polypeptide
chain. Others contain two or more chains, which may be either identical
or different. For example haemoglobin is formed of 4 polypeptide
chains, of which two α chains are of one kind and the other two β
chains are of another kind.
N and C terminal ends of protein
An amino acid in a polypeptide is called a residue. A polypeptide
have two ends, namely amino and carboxyl terminal end. The end of
the polypeptide chain containing amino group is called amino terminal
or N-terminal. The end of the polypeptide chain containing carboxyl
group is called carboxyl terminal or C-terminal. The terminal amino
acid with the free amino group is called N-terminal amino acid and the
terminal amino acid with the free carboyl group is called C-terminal
amino acid.
R1 R2 R3 R4
NH2 CH C NH CH C NH CH C NH CH C OH
O O O O
N-terminal amino acid C-terminal amino acid
R1, R2,R3 and R4 - Side chains
5.4 Properties of proteins

5.4.1 Physical properties
1. Colour and taste
Proteins are colourless and usually tasteless. These are
homogeneous and crystalline.
103
2. Solubility
Solubility of proteins is influenced by pH. Solubility is lowest at
isoelectric point and increased with increasing acidity of alkalinity.
3. Optical activity
All protein solutions rotate the plane polarised light to the left i.e.
these are levorotatory.
4. Colloidal nature
Because of their giant size, the proteins exhibit many colloidal
properties are:
i. Their diffusion rate is extermely low.
ii. They may produce considerable light-scattering in solution, thus
resulting in visible turbidity (Tyndall effect).
5. The comparatively week forces responsible for maintaining
secondary, tertiary and quarternary structure of proteins are readily
distrupted with resulting loss of biologic activity. This distruption of native
structure is termed denaturation. Physically, denaturation may be viewed
as randomizing the conformation of a polypeptide chain without affecting
its primary structure (Fig.5.3).
8M urea
Active enzyme Inactive enzyme

(native form) (denatured form)
Fig. 5.3 Denaturation of protein

The biological activity of most proteins is destroyed by exposure
to strong mineral acids or bases, heat, urea, acetone, alcohol and ionic
detergents etc. Denatured proteins are less soluble in water.
104
5.4.2 Chemical properties
1. Hydrolysis
i. By acidic agents
Proteins upon hydrolysis with concentrated mineral acids such
as, HCl yield amino acids in the form of their hydrochlorides.
ii. By proteolytic enzymes
Under relatively mild conditions of temperature and acidity,
certain proteolytic enzymes like pepsin and trypsin hydrolyse the
proteins. Enzyme hydrolysis is used for the isolation of certain amino
acids like tryptophan. Two important drawbacks with this type of
hydrolysis are:
a. It requires prolonged incubation and
b. Hydrolysis may be incomplete
2. Colour reaction with Biuret reagent
When a protein solution is treated with alkaline CuSO4 reagent,
the peptide bonds present in the protein interact with copper ions and
forms violet coloured Biuret complex (Fig.5.4). The colour deepens
which depend on the number of peptide bond present in the protein.
The sturcture of the voilet complex is
O O
H H
C N C
N
HN Cu++ NH
C N N C
H H
O O
Fig.5.4 Voilet colour complex
All proteins except dipeptides react with Biuret reagent because a
minimum of two peptide linkages are involved in this reaction.
105
O O
H
C C NH C C NH C
R R R
This reaction is widely used both as a qualitative test for the

detection of proteins and also as a quantitative test for the estimation of
protein in biological materials.
5.5 Protein structure
The architecture of protein molecule is complex but well organised.
To understand this, a clear idea of certain basic details regarding the
mode of arrangement of the structural units inside the molecule is
necessary. Linder strom - Lang suggest four types of structural
organisation for proteins. They are
1. Primary structure
2. Secondary structure
3. Tertiary Structure and
4. Quarternary strucutre
5.5.1 Primary structure
The primary structure of protein is defined as the sequence of amino
acid residues making up its polypeptide chain. The protein may be
formed of one or more polypeptide chains. The amino acids are arranged
in specific sequence in these polypeptide chain. The amino acid residues
are linked by peptide bonds. The peptide bond is formed between the
carboxyl group of one amino acid and the amino group of adjacent
amino acid. Some times the adjacent polypeptide chains are linked by
disulphide bonds.
106
R1
R2 R3 R4
H 2N CH C NH CH C NH CH C NH CH C OH
O O O O
N- terminal amino acid Peptide bond C- terminal amino acid
For example the primary structure of a protein can be written as
H2N gly lys leu val ala glu COOH

1 2 3 4 5 6
Each polypeptide chain of any length has at one end a N-terminal
amino acid containing free amino group and at the other end a C-terminal
amino acid containing a free carboxyl group. The amino acids in a
polypeptide chain are numbered from the N-terminal end.
The primary structure has the following salient features
i. Primary structure refers to the linear sequence of amino acid
residues.
ii. The proteins are linear and unfolded
iii. The protein is formed of one or more polypeptide chains.
iv. The amino acid residues are linked by repeating polypeptide bonds.
v. The adjacent polypeptide chains are linked by disulphide bonds.
vi. Most of the structural proteins which are in the form of fibres exhibit
primary structure
vii. The primary structure provides informtion on the number and
proportion of different amino acids in a protein.
Primary structures of a large number of proteins have been
determined.
eg. i. human insulin has 51 amino acids distributed in two poly peptide
chains. A chain-31 amino acids, B chain-20 amino acids and
the polypeptides are linked by disulphide bridges.
ii. cytochrome C contains 104 amino acids.
107
iii. human serum albumin contains 584 amino acids.
Primary structure is ultimately responsible for the native structure
of the protein.
5.5.2 Secondary structure
The peptide chain thus formed assumes a two-dimentional
secondary structure by way of folding or coiling consisting of a helically
coiled, zig-zag linear or mixed form. It results from the steric relationship
between amino acids located relatively near to each other in the peptide
chain. The linkages or bonds involved in the secondary structure
formation are hydrogen bonds and disulphide bonds.
i. Hydrogen bond
These are weak, low energy non-covalent bonds sharing a single
hydrogen by two electronegative atoms such as O and N. Hydrogen
bonds are formed in secondary structure by sharing H-atoms between
oxygen of C and nitrogen of N of different peptide bonds.
O H
C O ........... H N
(Hydrogen bond)
The hydrogen bonds in secondary structure may form either an
α-helix or β-pleated sheet structure.
ii. Disulphide bond
These are formed between two cysteine residues. They are strong,
high energy covalent bonds.
Proteins exist in the two forms of secondary structure, α helix and
β pleated sheet.
5.5.2.1 α-Helix
A polypeptide chain forms regular helical coils called α-helix. These
coils are stabilized by hydrogen bonds between carbonyl oxygen of
108
first amino and amide N of fourth amino acid residues. Thus in α-helix
intra chain hydrogen bonding is present. The α-helices can be either
right handed or left handed. Left handed α-helix is less stable because
of the steric interference between the carbonyl group and the side
chains. Only the right handed α-helix has been found in protein structure
(Fig.5.5).
Fig. 5.5 α-Helix structure
Each amino acid residue advances by 0.15 nm along the helix and
3.6 amino acid residues are present in one complete turn. The distance
between two equivalent points on turn is 0.54 nm and is called a pitch.
Small or uncharged amino acid residues such as alanine, leucine
and phenyl alanine are often found in α-helix. More polar residues
such as arginine, glutamate and serine may repel and destabilize α-
helix. Proline is never found in α-helix.
Hair, nail, skin contain a group of proteins called keratins rich in α-
helical structure.
5.5.2.2 β-pleated sheet structure
A conformation called β pleated sheet structure is thus formed
when hydrogen bonds are formed between the carbonyl oxygens and
109
amide hydrogens of two or more adjacent extended polypeptide chains.
Thus the hydrogen bonding in β pleated sheet structure is interchain.
The structure is not absolutely planar but is slightly pleated due to the
bond angles. The adjacent chains in β-pleated sheet structure are either
parallel or antiparallel, (Fig.5.6) depending on whether the amino to
carbonyl peptide linkage of the chains runs in the same or opposite
direction.
NH2
NH2 H2N COOH
R R
R R
C O .... C O
.... NH
HN O C
HN
NH ..............O C
R R
O C R R
O C ....
....
.... NH
C O ..............HN
NH
HN C O
R R
C R R
C O .... O
...
... C
HN
O NH
NH
NH.............. O C
Parallel chains
Anti parallel Chains
Fig. 5.6 β-pleated sheet structure

In both parallel and antiparallel β-pleated sheet structures, the
side chains are on opposite sides of the sheet. Generally glycine, serine
and alanine are more common to form β-pleated sheet. Proline occurs
in β-pleated sheet although it tends to distrupt the sheets by producing
links. Silk fibroin, a protein of silk worm is rich is β-pleated sheet.
5.5.3 Tertiary structure
The polypeptide chain with secondary structure may be further
folded, super-folded, twisted about itself forming many sizes. Such a
structural confirmation is called tertiary structure. It is only one such
confirmation which is biologically active and protein in this conformation
110
is called as native protein. Thus the tertiary is constitued by steric
relationship between the amino acids located far apart but brought closer
by folding (Fig. 5.7). The bonds responsible for interaction between
groups of amino acids are as follows.
i. Hydrophobic interactions
Normally occur between nonpolar side chains of amino acids such
as alanine, leucine, methionine, isoleucine and phenyl alanine. They
constitute the major stabilzing forces for tertiary structure forming
a compact three-dimentional structure.
ii. Hydrogen bonds
Normally formed by the polar side chains of the amino acids.
iii. Ionic or electrostatic interactions
The interaction occurs between oppostively charged polar side
chains of amino acids, such as basic and acidic amino acids.
iv. Vander -wall forces
Occurs between non polar side chains.
v. Disulphide bonds
These are S-S bonds formed between - SH groups of distant
cysteine residues.
Fig. 5.7 Tertiary structure (eg. Myoglobin)
111
5.5.4 Quarternary structure
Some proteins are made up of more than one polypeptide chain
These peptide chains held together by non-covalent interactions or by
covalent cross - links it is referred to as the quarternary structure. The
assembly is often called as an oligomer and each constituent peptide
chain is called as a monomer or sub unit. The monomers of oligomeric
protein can be identical or quite different in primary, secondary or tertiary
structure (Fig. 5.8).eg:
Proteins with 2 monomers (dimer) eg. Creatine phosphokinase
Proteins with 4 monomers (tetramer) eg. Haemoglobin
Fig. 5.8 Quarternary sturcutre (eg. haemoglobin)

5.6 Biologically important proteins
i. Glutathione is a tripeptide containing glutamic acid, cysteine and
glycine. It is present in erythrocytes and several other tissues. It
acts as a coenzyme and protects haemoglobin against oxidation.
ii. Insulin and glucagon are pancreatic hormones, involved in the
regulation of glucose metabolism.
112
iii. Angiotensin is a peptide which stimulates the release of certain
hormones from adrenal gland.
iv. Collagen, is a connective tissue protein rich in proline and hydroxy
proline.
5.6.1 Plasma proteins
Plasma consists of many proteins such as albumin, globulin and
fibrinogen. Total protein of the plasma is about 6-8gm /100ml. Plasma
proteins comprise a major part of the solids of plasma. Albumin combine
with substances of low solubilities such as cholesterol, triacylglycerol
to form more soluble complexes, which can be transported in the an
aqueous environment of the body fluids.
Excercise
I. Choose the correct answer from the given four altenratives
a. Phenyl alanine is a
i. Aromatic amino acid ii. Aliphatic amino acid
iii. Dipeptide iv. Glycoprotein
b. Essential amino acids
i. are synthesized in the body
ii. are not synthesized in the body
iii. are not used for protein biosynthesis
iv. are unstable
c. The primary structure of proteins is associated with this
i. Amino acid sequence
ii. β-pleated sheet structure
iii. Conformation
iv. Relative position of subunits
113
d. Protein denaturation results in
i. change of primary structure
ii. change of secondary structure.
iii. change of tertiary structure
iv. change in both secondary and tertiary structures.
e. The bonds responsible for the tertiary structure of proteins are
i. Hydrogen bonds
ii. Vander wall forces
iii. Disulphide bonds
iv. All the above.
a. The simplest amino acid is -----------
b. All the amino acids exist in their ------------ form.
c. The functional group present in tryptophan is ------------
d. Guanidino group is present in the amino acid -------------
e. α helix nature of proteins tell about the ------------- structure of
proteins.
f. ---------------- amino acid is never found in α-helix
a. Proteins are not found in plants
b. Ornithine is a non-protein amino acid.
c. Glutamic acid has two carboxyl groups
d. Myoglobin can be analysed for its quaternary structure
e. A dipeptide has two peptide bonds.
114
a. Primary structure - Simplest amino acids
b. Glycine - Guanidino group
c. Zwitter ion - Amino acids sequence
d. Arginine - Quaternary structure
e. Hemoglobin - Tertiary structure
f. Myoglobin - Denaturing reagent
g. Urea - Isoelectric point
V. Give short answer for the followings
a. What is a peptide bond?
b. Give the D form of glycine.
c. Write the structure of Leucine.
d. How are proteins denatured?
e. Give the salient features of primary structure of a protein.
f. Name the any of two biologically important proteins with their
functions.
a. Give the classification of aminoacids.
b. Give the structure of aromatic amino-acids.
c. What are essential amino acids? Give examples.
d. Explain the secondary and tertiary structure of proteins.
e. What are the salient features of primary structure of proteins?
f. Write the reaction of an amino acid with ninhydrin reagent?
g. What is the action of Biuret reagent on proteins?
115
CHAPTER 6
LIPIDS
6.1 Introduction
Lipids form a group of organic compounds which are widely
distributed in living organisms. Chemically they are esters of fatty acids
or are capable of forming esters. The important lipids are triacyl
glycerols, phospholipids, sterols and fatty acids.
6.2 Fatty acids
Fatty acids are carboxylic acid with hydrocarbon side chains. They
are the simplest form of lipids and they are water soluble. They exist in
the body either as free acids or fatty acyl esters such as triacylglycerol.
The fatty acids are released from these lipids on hydrolysis by lipases.
Fatty acids may be divided into (i) saturated fatty acids and
(2) unsaturated fatty acids.
6.2.1.1 Saturated fatty acids
These are fatty acids which donot contain double bonds. They
have general formula CnH2n+1 COOH (Table 6.1).
116
Table 6.1 Saturated fatty acids commonly found in natural fats
Acid Formula Carbon atoms
Acetic CH3COOH 2
Propionic C2H5COOH 3
Butyric C3H7COOH 4
Caproic C5H11COOH 6
Caprylic C7H15COOH 8
Decanoic C9H19COOH 10
Lauric C11H23COOH 12
Myristic C13H27COOH 14
Palmitic C15H31COOH 16
Stearic C17H35COOH 18
Arachidic C19H39COOH 20
Behenic C21H43COOH 22
Lignoceric C23H47COOH 24
6.2.1.2 Unsaturated fatty acid
These are fatty acids which contain double bonds. They have
general formula (CnH2n-1 COOH). They are subdivided into
(a) Monounsaturated fatty acid : These are fatty acids containing
one double bond. (eg) Oleic acid.
C H 3 (C H 2 ) 7 C H = C H (C H 2 ) 7 C O O H
O leic acid
(b) Polyunsaturated fatty acid : These are fatty acids that contain
more than one double bond.
(eg) linoleic acid, linolenic acid, arachidonic acid.
117
Importance
1. They act as energy stores and fuel molecules.
2. They are the major components of cell membrane.
6.2.1.3 Essential fatty acid (EFA)
The fatty acids that cannot be synthesised by the body and therefore
should be supplied in the diet are known as essential fatty acids.
Chemically they are polyunsaturated fatty acids (PUFA), namely linoleic
acid, linolenic acid and arachidonic acid.
Structure
CH3 (CH2)4 CH = CH-CH2-CH=CH(CH2)7 COOH
Linoleic acid
CH3 (CH2)4 CH = CH-CH2-CH=CH -CH2-CH = CH(CH2)7 COOH
Linolenic acid
CH3 (CH2)4 CH = CH-CH2-CH=CH -CH2-CH = CH-CH2-CH=CH-
(CH2)3 COOH
Arachidonic acid
Functions
1. EFAs are requried for the membrane structure and functions.
2. They are necessary for the maintenance of growth, reproduction
and good health.
3. They are important for the transport of cholesterol, formation of
lipoportein and prevention of fatty liver.
4. They serve as precursor for prostaglandin biosynthesis.
5. They prolong clotting time and increase fibrinolytic activity.
118
6.3 Structure of triacyl glycerol
Triacylglycerols are simple lipids in which glycerol backbone is
esterified with three fatty acids. This form the major part of dietary
lipids. They are stored in adipose tissue and serve as concentrated fuel
reserve of the body.
O O
1 CH2 O C (CH2)14 CH3 CH2 O C (CH2)16 CH3
O O
3 CH O C (CH2)14 CH3 CH O C (CH2)16 CH3

O O
2 CH2 O C (CH2)14 CH3 CH2 O C (CH2)14 CH3
Tripalmitin (simple triacyl glycerol) Distearopalmitin (mixed

triacylglycerol)
If the three hydroxyl groups are esterified with same type of fatty
acid then the lipid is called as simple glyceride. If the three hydroxyl
groups are esterified with different type of fatty acids, the lipid is called
as mixed glyceride.
6.3.1 Properties
6.3.1.1 Physical
1. Triacylglycerols are non polar, hydrophobic molecules, insoluble
in water, but soluble in organic solvents.
2. Specific gravity of fats is lower than water. Therefore fats and
oils float on water.
3. Melting point of triacylglycerol is related to the chain length and
degree of unsaturation of fatty acids. The longer the chain length,
the higher the melting point and greater the number of double bonds,
the lower the melting point.
119
4. They are tasteless, odourless, colourless and neutral in solution.
5. They are themselves good solvents for other fats.
6.3.1.2 Chemical properties
1. Hydrolysis : On boiling with water at 200°C, triacyl glycerols are
hydrolysed to glycerol and fatty acids in a stepwise manner.
O O
CH 2 O C R1 CH 2 O C R1
O O
+H 2O
O C O + R 3-COOH
CH R2 CH C R2
O 200°C
Fatty acid
CH 2 O C R3 CH 2 O H
Triacylglycrerol Diacylglycerol
O
CH2 O C R1 CH2 O H
O O
+H2O
CH O C R2 O + R1-COOH
CH C R2
200°C
Fatty acid
CH2 O H O
CH2 H
Diacylglycerol
Monoacylglycerol
CH2 O H CH2 O H
O
+H2O
CH O C R2 O H + R2-COOH
CH
200°C
Fatty acid
CH2 O H CH2 O H
Monoacylglycerol glycerol
120
The reaction can also be catalysed by the enzymes lipases.
2. Hydrogenation
Hydrogenation of unsaturated fatty acids present in the fats, lead
to the formation of saturated fats. Hydrogenation elevates the melting
point. Thus an oil is converted to a solid fat.
CH3 (CH2)7CH = CH (CH2)7COOH + H2

Oleic acid
Pt, Pd or Ni
CH3 (CH2)7CH2 CH2 (CH2)7COOH
as catalyst Stearic acid
This reaction is of great commercial importance since it permits

transformation of inexpensive and unsaturated liquid vegetable fats into
solid fats. The latter are used in the manufacture of candles, vegetable
shortenings like vanaspathi and oleomargarine.
3. Saponification
Boiling with an alcoholic solution of strong metallic alkali hydrolyses
triacyl glycerol into soap and fatty acid. This process is called as
saponification.
CH2 - OOC C17H33 + Na OH CH2 - OH

Saponification
CH - OOC C17H33 + Na OH CH - OH + 3C17H33. COONa
CH2 - OOC C17H33 + Na OH Sodium oleate

CH2 - OH
(a soap)
Triolein Sodium Glycerol
(a fat) hydroxide
Soaps are important cleansing agents. Their cleansing property is

due to their emulsifying action. This is accomphlised by means of negative
charge the soap anion confers on oil droplets. The electrostatic repulsion
121
then prevents the coalescene of soap and results in the removal of dirt
particles.
4. Halogenation
Unsaturated fatty acids in the triacyl glycerol take up chlorine,
bromine and iodine atoms at their double bonds to form saturated
halogenated derivatives.
C H 3 (C H 2 ) 7 C H = C H (C H 2 ) 7 C O O H + I2
O leic acid
Acetic acid / m ethanol

C H 3 (C H 2 ) 7 C H C H (C H 2 ) 7 C O O H
R oom tem perature
I I
9,10 diiodo stearic acid
5. Rancidity
On storage, unsaturated fatty acids present in the fat are likely to
undergo oxidation and hydrolytic cleavage in the presence of lipases
present in the fat itself or secreted by the contaminating microorganisms.
This leads to change of colour and odour of the fat. This change is
called as rancidity. This occurs due to the formation of peroxides at the
double bonds of unsaturated fatty acids. Rancidity can be prevented
by certain antioxidants such as vitamin -E, gallic acid, butylated hydroxy
toluene etc.Vegetable oils are less rancid because of the presence of
natural antioxidants such as vitamin E and carotenoids.
6.3.2 Quantitative tests
There are certain chemical constants used for the characterisation
of fats.
6.3.2.1 Acid Number
It is the number of milligrams of KOH required to neutralize the
free fatty acids present in 1 gm of fat. The acid number, thus, tells us
about the quantity of free fatty acid present in a fat. Obviously, a fat
122
which has been processed and stored properly has a very low acid
number.
6.3.2.2 Saponification number
It is the number of milligrams of KOH requried to saponify 1 gm
of fat. The saponification number, thus, provides information on the
average chain length of the fatty acids in the fat. The saponification
number varies inversely with the chain length of the fatty acids. The
shorter the average chain length of the fatty acids, the higher is the
saponification number.
6.3.2.3 Iodine number
It is the number of grams of iodine absorbed by 100 gm of fat.
The iodine number is, thus, a measure of the degree of unsaturation of
the fatty acids in the fat. The iodine number gives no indication as to the
number of double bonds present in the fatty acid molecules.
6.3.2.4 Polenske number
It is the number of millilitres of 0.1 N KOH required to neutralize
the insoluble fatty acids. This indicates the level of non volatile fatty
acids present in the fat.
6.3.2.5 Reichert - Meissl number
It is the number of millilitres of 0.1 N KOH required to neutralize
the soluble, volatile fatty acids derived from 5 gm of fat. The Reichert-
Meissl number thus, measures the quantity of short chain fatty acids in
the fat molecule.
6.3.2.6 Acetyl number
It is the number of milligrams of KOH required to neutralize the
acetic acid obtained by saponification of 1 gm of fat after it has been
acetylated. The acetyl number is, thus, a measure of the number of OH
groups in the fat.
123
6.4 Phospholipids
Phospholipids are compound lipids containing phosphoric acid in
addition to fatty acid, alcohol and a nitrogenous base.
Phospholipids are classified into two types.
1. Glycerophospholipids (or) Phosphoglycerides that contain
glycerol as alcohol.
2. Sphingophospholipids that contain sphingosine as alcohol.
6.4.1.1 Glycerophospholipids
These are the major lipids that occur in biological membranes.
They present in all plant and animal cells. They are abundantly present
in heart, brain, kidney, egg yolk and soyabean. The important
glycerophospholipids are lecithin, cephalin, phosphotidyl inositol,
cardiolipin and plasmalogen.
O CH2 O C R
R C O CH O
+
CH2 O P O CH2 CH2 N (CH3)3
OH
Lecithin
The lecithins contain glycerol, fatty acids, phosphoric acid and

choline (nitrogenous base). Lecithins generally contain a saturated fatty
acid at α1 position and an unsaturated fatty acid at β postition. .
124
O
O α1CH2 O C R
R C O CH β O
α CH2 O P O CH2CH2 NH3
+
OH
Cephalin
The cephalin contains glycerol, fatty acids, phosphoric acids and

ethanol amine as nitrogenous base.
O CH2 O C R
OH OH
R C O CH O H C C OH
H
CH2 O P O C H H C
H
OH C C H
OH OH
Phosphatidyl inositol
Inositiol
Phosphatidyl inositol contains a hexahydric alcohol called as

inositol.
O CH 2 O CH CH R
R C O CH O
CH 2 O P CH 2 CH 2 NH 3+
OH
Plasmalogen
125
Plasmalogens posses an ether link in α1 position instead of ester
link. The alkyl radical is an unsaturated alcohol and they are found in
brain and nervous tissue
6.4.1.2 Spingophospholipids
These are present in plasma membrane and myelin sheath. They
are amphipathic lipids having polar head and non-polar tail. They contain
an amino alcohol called shingosine. It is attached to a fatty acid by an
amide linkage to form ceramide. Ceramide is linked to phosphoryl choline
to form sphingomyelin, which is an important member of
sphingophospholipids.
Ceramide
Sphingosine
OH O
CH 3 (CH 2) 12 CH CH CH NH C R
CH 2
Fatty acid
O
OH P O
O-CH 2CH 2 N + (CH 3) 3
Sphingomyelin
Choline
6.4.2 Properties of glycero phospholipids

1. Glycerophospholipids are white waxy substances, which become
dark when exposed to air and light, owing to autoxidation and
decomposition. This is due to the presence of unsaturated fatty
acids in the molecules.
126
2. They are soluble in alcohol and other fat solvents except in acetone.
3. They are hygroscopic and mix well with water to form cloudy,
colloidal and slimy solutions.
4. They donot have definite melting point and decompose when
heated.
5. They are readily hydrolysed by boiling with acids and alkalies to
their constituents.
6. They are hydrolysed by enzyme phospholipase to various
components.
Phospholipase A1
CH2 - O + CO - R1
O
R2 C O C H
O Phospholipase D
Phospholipase A2 CH2 - O + P - O - N-base
(Choline)
O
Phospholipase C
Phospholipase A2 produces lysolecithin which is a
potent hemolytic agent which degrade red blood cells.
6.4.3 Properties of sphingophospholipids

1. They are white crystalline substances
2. They form opelescent suspension in water.
3. They are insoluble in fat solvents like ether and acetone.
4. They are stable in air and light.
6.4.4 Importance of phospholipids
1. They form the structural components of membrane and regulate
membrane permeability.
2. They play an important role in cellular respiration.
127
3. They participate in the absorption of fat from the intestine.
4. They act as surface tension lowering agent.
5. They are essential components of bile where they act as detergents
and help in the solubilisation of cholesterol.
6. They also participate in blood clotting.
7. They protect and insulate the neuronal fibres of myelin sheath.
8. They are involved in the interaction of hormones with receptors.
9. They can act as lipotropic agents and prevent fatty liver formation.
10. They help in the reverse transport of cholesterol.
6.5 Sterols
Sterols are compounds containing a cyclic nucleus namely
cyclopentanoperhydro phenanthrene (CPPP) and one or more hydroxyl
groups. They are widely present in animal and plant tissue.
6.5.1 Cholesterol
Cholesterol is exclusively found in animals and is the most abundant
animal sterols. It is widely distributed in all cells and is a major component
of cell membrane and lipoproteins. In human beings, it is very important
to control the normal level of cholesterol in blood.
6.5.1.1 Structure
Cholesterol is a C27(C27H46O) compound. It has one hydroxyl
group at C3 and a double bond between C5 and C6. An aliphatic side
chain is attached to C17. Cholesterol contains a total of 5 methyl groups
(Fig. 7.1).
Cholesterol is the precursor of various physiologically important
compounds such as bile acids, vitamin-D, steroid hormones etc.
128
21 22
20 23
18 27
12 17 24
11 16 25 26
19 13
1
2 15
9 14
10 8
3
5 7
OH 4 6
Fig. 7.1 Structure of cholesterol

6.5.1.2 Properties
1. They are white shining rhombic plate like crystals.
2. It is tasteless and odourless
3. It has a high melling point of 150°C.
4. It is insoluble in water and soluble in fat solvents.
5. It is a poor conductor of heat and electricity and serves as an
insulator against electric charge. In brain, where it is present
abundantly, it acts as an insulator against nerve impulse which are
electrical in nature.
6. Cholesterol, when oxidised under suitable conditions, undergoes
rapid oxidation to form a ketone-cholestenone.
7. The hydroxyl group of cholesterol readily forms ester with fatty
acids, stearic acid etc.
8. It gives addition reactions such as hydrogenation and halogenation
because of the presence of double bond.
6.5.1.3 Physiological importance of cholesterol
1. It is one of the essential constituents of cells.
2. It influences the permeability functions of the cell.
3. It controls the redcells from being easily hemolyzed.
129
4. It performs defensive action.
5. It assists the formation of bile acids and bile salts, 7-
dehydrocholesterol, vitamin D3, corticosteroid hormones,
androgens, estrogens and progesterone.
6. It acts as an antagonist to phospholipid.
6.5.2 Ergosterol
Ergosterol occur in plants. It is also found in yeast and fungi as the
structural constituent of membranes. It is an important precursor for
vitamin-D. When exposed to light, it is converted to ergocaliciferol, a
compound containing vitamin-D activity.
OH
Fig. 7.2 Structure of ergosterol

Its structure is similar to that of cholesterol, but differs in the
following aspects.
1. It has another double bond at C7-C8.
2. It has a double bond in the side chain.
3. It has an additional CH3 group in the side chain (Fig 7.2).
6.5.3 Stigma sterol - It is structurally similar to that of ergosterol
except at C7 (Fig. 7.3)
130
Stigmasterol and its derivatives sitosterols are probably the most
common sterol of plants. The important sources are soya bean and
calabar beans.
OH
Fig. 7.3 Structure of stigmasterol
Excercise

a. Triolein is a
i. mixed glyceride ii. simple glyceride
iii. fatty acid iv. phospholipid
b. Stearic acid is
i. an unsaturated fatty acid ii. a saturated fattyacid
iii. essential fatty acid iv. a simple lipid
c. The number of double bonds present in arachidonic acid is
i. 1 ii. 2 iii. 3 iv. 4
d. Cholesterol is present in
i. animals ii. plants iii. yeast iv. fungi
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e. CnH2n-1COOH is the general formula for
i. saturated fatty acids ii. unsaturated fatty acids
iii. simple lipids iv. phospholipids
a. A fat with high acid number is said to be ____________
b. Choline is present in ____________
c. Cerebroside is a _______________
d. ___________ is an essential fatty acid.
e. Fats are _____________ in water.
a. Oleodibutyrin is a simple glyceride
b. Iodine number denotes unsaturation in lipids
c. Sphingolipid contains glycerol
d. Rancidity of fats can be prevented by antioxidants.
e. Ergosterol can be converted to vitamin D.
1. Cholesterol - Unsaturated fatty acids
2. Oleic acid - Essential fatty acids
3. Lecithin - Simple glyceride
4. Tripalmitin - Phospholipid
5. Arachidonic acid - Animal sterol
a. Name the nitrogenous base present in sphingolipids
b. Mention any one hydrolytic product of lecithin
c. What is the hydrogenated product of triolein
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d. Name the parent compound present in sterols.
e. How many methyl groups are present in cholesterol.
a. Explain the structure and the properties of triacylglycerol.
b. Write a note on the structure and properties of phospholipids.
c. Explain the structure and functions of cholesterol.
d. What is ergosterol? Give the structure and functions of
ergosterol.
e. Give the classification of fatty acids? Explain the functions of
EFA and their structures.
133
CHAPTER 7
NUCLEIC ACIDS
7.1 Introduction
Nucleic acids are colourless, complex, amorphous compounds
made up of three units : purine and pyrimidine bases, sugar and
phosphoric acid. The nucleic acids are of two types DNA and RNA. It
is very important to know the structure of nucleic acids and their
components.
7.2 Pyrimidine bases
7.2.1 Structure of pyrimidine bases
Pyrimidine bases are derived from the parent compound pyrimidine.
The pyrimidine bases present in nucleotides are cytosine, uracil
and thymine. It is 6 membered heterocyclic compound contains carbon,
nitrogen, hydrogen and oxygen atoms (Fig 7.1).
O O
NH 2
4
3 CH3
5 HN HN
N N
6 O O
2 O N N
N N H H
1
Cytosine (2-oxy 4-amino Uracil (2,4, dioxy Thymine (2,4, dioxy 5methyl
Pyrimidine pyrimidine) pyrimidine)
pyrimidine)
Fig. 7.1 Structure of pyrimidine bases

7.2.2 Properties of pyrimidine
1. Pyrimidine bases are soluble in water.
2. They absorb UV light at 260 nm. This property is used to detect
and estimate pyrimidine nucleotides.
134
3. They are capable of forming hydrogen bonds with other purine
bases
4. They exhibit keto-enol tautormerism.
7.3 Purine bases
7.3.1 Structure of purine bases
Purine bases are derived from the parent compound purine. Purine
contains the heterocyclic ring system. Fusion of the pyrimidine ring with
imidazole yields the purine ring (Fig. 7.2).
NH2 O
6 7 N N
N
1 N NH
N 5
8
2 9 N N NH2
4 N N
N N H H
3 H
Adenine Guanine (2 amino 6 oxy purine)
Purine
(6 amino purine)
Fig.7.2 Structure of purine bases

The purine bases present in nucleic acids are adenine and guanine.
Other purine bases are hypoxanthine and xanthine. They are
intermediates in the formation of adenine and guanine nucleotides.
7.3.2 Properties of purine bases
1. Purine bases are sparingly soluble in water.
2. They absorb light in UV region at 260 nm. This property is used
for the detection of and the quantification of purine nucleotides.
3. They are capable of forming hydrogen bonds.
4. They exhibit keto-enol tautomerism at body pH.
7.4 Nucleic acids
Two types of nucleic acids are present in all mammalian cells.
They are DNA - deoxy ribonucleic acid and RNA- ribonucleic acid.
DNA is present in the nucleus and mitochondria. RNA is present in the
nucleus, risosome and cytoplasm.
135
Nucleic acids are acidic sustances containing nitrogenous bases,
pentose sugar and phosphoric acid. Both DNA and RNA are
polynucleotides. They are polymers of mononucleotides.
In nucleic acids, nucleotides are joined together by phosphodiester
linkages.
7.4.1 Nucleosides
A nucleoside is composed of purine or pyrimidine base and a
pentose sugar. Two types of pentose sugar are present in nucleoside,
they are ribose and deoxy ribose (Fig. 7.3). In the case of purine
nucleosides, the sugar is attached to N-9 of the purine ring, whereas in
pyrimidine nucleosides, the sugar is attached to N-1 of the pyrimidine
ring. The type of linkage is N-glycosidic linkage (Fig. 7.4).
CH 2 OH O OH CH 2 OH O OH
H H H H
H H H H
OH OH OH H
β-D-Ribose β-D-deoxyribose
Fig. 7.3 Structure of sugars in nucleic acids

NH2
N
Pyrimidine base - cytosine
O N
CH2 OH O
H Glycosidic linkage
H
H H
OH H
A Nucleoside (cytidine)
Fig. 7.4 Structure of a nucleoside

136
7.4.2 Nucleotides
Nucleotides are phosphorylated nucleosides usually one or two
of hydroxyl groups of ribose (or) deoxyribose are phosphorylated. Thus
a nucleotide has three structural components. They are nitrogenous
base, sugar and phosphate. Phosphate is attached to ribose (or) deoxy
ribose through an ester linkage (Fig.7.5).
NH2
Ester linkage
O
O N
O
OH P O CH2
OH
H H
H H
OH H
Fig. 7.5 Structure of a nucleotide (cytidylic acid)
7.4.3 Structure of DNA
7.4.3.1 Primary structure
Nucleotide sequence of a nucleic acid is known as its primary
structure which confers individuality to the polynucleotide chain.
Polynucleotide chain has direction. They are represented in
5’---> 3’ and 3’----> directions. Each polynucleotide chain has 2 ends.
The 5’ end carrying a phosphate group and 3’ end carrying an unreacted
hydroxyl group (Fig 7.6).
In 1953, J.D. Watson and F.H.C. Crick proposed a precise three
dimensional model of DNA structure based on model building studies,
base composition and X-ray diffraction studies. This model is popularly
known as the DNA double helix (Fig.7.7).
137
5 ' end O
O CH 2 Guanine
O H
O P O CH 2 O Thymine
OH
H
O H
O P O CH 2 O Cytosine
OH
Phosp ho diester linkage

O H
O P O CH 2 O Adenine
OH
Phosp ho diester linkage

O H
O P O CH 2
3 ' end
OH
Fig. 7.6 Primary structure of DNA
The purine bases present in DNA are adenine and guanine and the
pyrimidine bases present are thymine and cytosine. The purine and
pyrimidine bases of DNA carry genetic information where as the sugar
and phosphate groups perform the structural role.
7.4.3.2 Salient features of double helix
1. Two polynuleotide chains are coiled around a central axis in the
form of a right handed double helix.
2. Each polynucleotide chain is made up of 4 types of nucleotides.
They are adenylate, guanidylate, thymidylate and cytidinilate.
138
3. Each polynucleotide chain has direction or polarity. Further each
polynucleotide chain has 5’ phosphorylated and 3’ hydroxyl ends.
4. The backbone of each strand consists of alternating sugar and
phosphate. The bases project inwards and they are perpendicular
to the central axis.
5. The 2 strands run in opposite direction (ie.) they are antiparallel.
6. The strands are complementary to each other. Base composition
of one strand is complementary to the opposite strand. If adenine
appears in one strand, thymine is found in the opposite strand and
vice versa. When guanine is found in one strand, cytosine is present
in the opposite strand and vice versa.
7. Bases of opposite strands are involved in pairing. Pairing occurs
through hydrogen bonding and it is specific. Adenine pairs with
thymine through two hydrogen bonds. Guanine pairs with cytosine
with three hydrogen bonds.
8. Major and minor grooves are present on the double helix. They
arise because glycosidic linkages of base pairs are not opposite to
each other. Protein interact with DNA through the minor and major
grooves without disrupting the DNA strands.
9. According to Chargaff’s observation, the number of adenine base
is equal to thymine base and the number of quanine base is equal
to number of cytocine base ie. A = T and G = C. Also A + T = G
+ C and the ratio of A+T /G+C = nearly 1.0. The total number of
purine bases = the total number of pyrimidine bases.
7.4.3.3 Functions of DNA
1. DNA is the genetic material of living organisms. It is the
greatest super chip ever made by man.
2. DNA contain all the information required for the information
of an individual organism.
139
3. The genetic information in DNA is converted to
characteristic features of living organisms like colour of
the skin and eye, height, intelligence, ability to metabolise
particular substance, ability to withstand stress,
susceptibility to desease and ability to produce or
synthesise certain substances.
4. DNA is the source of information for the synthesis of all
cellular proteins. The segment of DNA that contain
information for a protein is known as gene.
5. DNA is transmitted from parents to offsprings and hence
transmit genetic information from one generation to another.
6. The amount of DNA in any given species or cell is constant
and is not affected by nutritional and metabolic states.
Fig. 7.7 Double helical structure of DNA
7. Avery Macleod and Mc Carty

in 1944 first demonstrated that
DNA contained the genetic
information and they referred
DNA as ‘transforming factor’.
8. The nucleotides present in

DNA are deoxy adenylic acid,
deoxy quanidylic acid, deoxy
cytidylic acid and deoxy thymidylic
acid.
140
7.4.4 Structure of RNA
RNAs are present in the nucleus, ribosomes and cytoplasm of
eukaryolic cells. They are involved in the transfer and expression of
genetic information. They act as primer for DNA formation. Some act
as enzymes and as coenzymes. RNA also function as genetic material
for viruses.
RNAs are also polynucleotides. In RNA polymer, purine and
pyrimidine nucleotides are linked together through phosphodiester
linkages. The sugar present is ribose. The nitrogenous bases present in
RNA are adenine and guanine (purine bases), uracil and cytosine
(pyrimidine bases). The nucleotides present in RNA are adenylic acid,
quanidylic acid, cytidylic acid and uridylic acid.
7.4.4.1 Types of RNA
There are mainly three types of RNAs in all prokaryotic and
eukaryotic cells. They are (1) Messenger RNA (mRNA) 2) Transfer
RNA (tRNA) 3) Ribosomal RNA (rRNA). They differ from each other
by size, formation and stability.
1. Messenger RNA
It accounts for 1-5% of cellular RNA. They have a primary
structure. They are single standed linear molecules. They consist of
1000-10,000 nucleotides. They have a free or phosphorylated 3’ and
5’ end. They have different life span ranging from few minutes to days.
mRNA molecules are capped at 5’ end by methylated guanine
triphosphate. Capping protects mRNA from nuclease attack. At 3’
end a polymer of adenylate (poly A) is found as the tail. Poly A tail
protects mRNA from nuclease attack.
Intrastrand base pairing among complementary bases allows folding
of the linear molecule. As a result, haripin or loop like secondary
structure is formed.
141
Functions
1. mRNA is a direct carrier of genetic information from the nucleus to
the cytoplasm.
2. It contain information required for the synthesis of protein
molecules.
2. Transfer RNA
It accounts for 10-15% of total cell RNA. They are the smallest of
all the RNAs. Usually they consist of 50-100 nucleotides. They are
single standard molecules. They contain unusual bases such as
methylated adenine, guanine, cytosine and thymine,dihydrouracil and
pseudouridine. These unusual bases are important for binding 6-RNA
to intra chain base pairing. Further some bases are not involved in base
pairing, resulting in loops and arms formation in tRNA. These folding in
the primary structure generates a secondary structure (Fig.7.8).
Fig.7.8 Secondary Structure of t-RNA
142
Secondary structure of t-RNA is in the form of a clover leaf. The
important feature of the clover-leaf structure are,
1. An acceptor arm with base sequence “CCA” 3’-OH of adenosine

moiety of t-RNA.
2. An anticodon arm which recognises codon on mRNA.
3. TϕC arm which contain unusual base cytosine.
4. D- arm which contain many dihydrouracil residues.
Functions
1. It is the carrier of amino acids to the site of protein synthesis.
2. There is at least one t-RNA molecule to each of 20 amino

acids required for protein synthesis.
3. Ribosomal RNA
This accounts for 80% of the total cellular RNA. It is present in

ribosomes. In ribosomes, r-RNA is found in combination with protein.
It is known as ribonucleoprotein. The length of rRNA ranges from
100-600 nucleotides. rRNA molecules have a secondary structure.
Intra strand base pairing between complementary bases generate double
helical segments or loops.
Functions
1. They are required for the formation of risosomes

2. They are involved in the initiation of protein synthesis.
143
7.4.5 Differences between DNA and RNA
DNA RNA
1. Sugar moiety is deoxy ribose Sugar moeity is ribose
2. Uracil is absent Thymine is usually absent
3. Double stranded molecules Single stranded molecules
both run in opposite directions
4. Sum of purine and pyrimidine Sum of purine and
bases are equal G+C = A+T pyrimidine bases are not
equal. G+C = A+T.
5. Bases are not modified Bases are modified
6. Resistant to alkali hydrolysis Highly susceptible to alkali
hydrolysis.
7. No catalytic activity Some are catalytically
active.
8. Mostly DNA is present in present in nucleolus and
nucleus and also in mitochondria cytoplasm
7.4.6 Examples of nucleosides and nucleotides
Base Nucleoside Nucleotide
Adenine Adenosine Adenylic acid

Guanine Guanosine Guanidylic acid
Cytosine Cytidine Cytidylic acid
Thymine Thymidine Thymidylic acid
Uracil Uridine Uridylic acid
144
Excercise

a. Thymine is exclusively present in
i. DNA ii. tRNA iii. mRNA iv. rRNA
b. Thymidynilate is a
i. purine base ii. nucleoside
iii. nucleotide iv. pyrimidine base
c. Anticodon arm is present in
d. Adenine pairs with thymine
i. a single bond ii. double bond
iii. triple bond iv. none of the above
e. The alkali resistant nucleic acid is
a. Tϕc arm is present in _______________ nucleic acids
b. ______________ nucleic acid is a genetic carrier
c. ______________ is a nucleoside.
d. ______________ RNA is derived from DNA.
e. Adenine is a ______________ base.
a. Purine bases show maximum absorption at 260 nm
b. Uracil is a pyrimidine base.
145
c. The products formed when nucleosides are cleaved are
nucleotides and nitrogenous bases.
d. Nucleases can cleave RNA.
e. DNA and RNA have similar structures.
1. Cytosine - Purine base
2. Thymine - Pyrimidine base
3. t RNA - Adenylic acid
4. Nucleotide - ATP
5. Nucleoside - Amino acid activation
1. what is a nucleoside?
2. What are purine bases?
3. What is phosphodiates linkage?
4. Which is the direction of DNa double strands?
5. Give the keto enol form of adenine.
1. Explain the structure of purine and pyrimidine bases.
2. Explain the primary structure of DNA.
3. List out the functions of DNa and RNA.
4. What are the salient features of Watson and Crick double
helical DNA model .
5. Give the structure and the functions of tRNA.
146
CHAPTER 8
VITAMINS
8.1 Introduction
The vitamins are a group of complex organic compounds required
in small quantities by the body for the maintenance of good health.
They are not normally synthesized in the body and hence they should
be supplied by the diet. The vitamins are present in foods in small
quantities.
Unlike other groups of nutrients the vitamins are not chemically
similar to each other. Each vitamin has a specific chemical structure and
a specific function or functions in the living system. Most of the vitamins
act as coenzymes in the body. Normally a well balanced diet will supply
all the necessary vitamins in sufficient quantity.
8.2 Classification
Vitamins are generally classified into two main groups. (i) fat soluble
vitamins (ii) water soluble vitamins.
8.2.1 Fat soluble vitamins
The members of this group are A,D,E and K. All these vitamins
are not soluble in water and readily soluble in fat dissolving organic
solvents. Inside the body for their transport and metabolism they need
the presence of fats.
8.2.1.1 Vitamin - A
Vitamin A is found only in foods of animal origin. It is present in
almost all species of fish, birds and mammals. The yellow plant pigments
α, β and γ carotenes and cryptoxanthin are precursors of vitamin A.
The body has the ability to convert these carotenoid compounds present
in the diet into vitamin A.
147
The chemical structure of β - carotene is such that it oxidizes to
form two molecules of vitamin A, the other provitamins form only one.
β-carotene is more efficiently converted to vitamin A than α - or
γ - carotene or cryptoxanthin.
There are two forms of vitamin A: Vitamin A1 which occurs in the
liver of marine water fish and Vitamin A2 found in the liver of fresh
water fish. The vitamin A which contain alcoholic group in the side
chain is called as retinol (Fig. 8.1) and which contain aldehyde group is
known as retinal. Though the two vitamins differ slightly in their chemical
structures their physiological functions are the same.
H3C CH3 CH3 CH3

CH2OH
CH3 Retinol (Vitamin A1)
CH3 CH3 H3C

H3C CH3
H3C CH3
CH3 CH3 CH3
β-Carotene
Fig. 8.1 Structure of Vitamin A1 and β-Carotene
Functions
Vitamin A is essential
i. for the growth and metabolism of all body cells
ii. for the formation of rhodopsin (visual purple) a complex
substance formed from retinol and protein. Rhodopsin, a
pigment found in retina is necessary for vision in dim light.
148
iii. for the maintenance of healthy skin, particularly mucous
membrane of the cornea and the lining of respiratory tract.
Sources
The liver of any animal is a rich source of vitamin A. Fish liver oil is
an excellent source. Whole milk, egg yolk, dark green leafy vegetables
and deep yellow vegetables and fruits are rich in carotenes, which can
be converted into vitamin A by the intestinal wall.
Requirements
Vitamin A requirement is based on the intake to maintain the normal
blood level. Adults placed on a vitamin A free diet are found to show
no change in the level for several weeks.The capacity of the body to
store vitamin A provides for an effective emergency supply.
Recommended amount of Vitamin A for different age group is as follows:
Infants - 1500 IU / day
Children - 2000-3000 IU / day
Adults - 5000 IU / day
Pregnant and
lactating women - 6000-8000 IU / day
(IU = International units)
Absorption and storage
Vitamin A and carotene are absorbed from the small intestine into
the lymph system. The maximum absorption is reached 3 to 5 hours
after consumption. The rate of absorption of vitamin A is more rapid
than that of carotene. In the human being about 95% of the vitamin A
stored in the body is found in the liver with small amount in the lungs,
adipose tissue and kidneys.
Deficiency
The earliest sign of vitamin A deficiency is concerned with vision.
Initially there is a loss of sensitivity to green light, followed by impairment
to adapt to dim light. This condition leads to night blindness. More
149
prolonged or severe deficiency leads to the ulceration of cornea and
this condition is known as xerophthalmia or keratomalacia.
8.2.1.2 Vitamin D
There are two distinct forms of Vitamin D
i. Cholecalciferol (Vitamin D3) is the natural form of the vitamin
occurring in foods (Fig. 8.2). It can be formed under the skin from
7 dehydro cholesterol by the influence of sun light (ultra violet (UV)
radiation)
ii. Ergo calciferol (vitamin D2) is a synthetic form of the vitamin which
has the same activity as the natural vitamin. It is produced by the
UV radiation of ergo sterol, a compound which can be extracted
from yeast. This is the form of vitamin which is added to
commodities such as margarine and baby foods.
CH 3 CH 3
H C CH 2 CH 2 CH 2 CH
CH 3
CH 3
CH 2
Cholecalciferol (Vitamin D3)

OH
Fig. 8.2 Structure of Vitamin D

Functions
Vitamin D is necessary for the growth and maintenance of bones
and teeth. Vitamin D helps in the absorption of calcium and phosphorus
from the small intestine and for the uptake of calcium and phosphorus
by the bones and teeth.
Sources
Vitamin D is not widely distributed in nature and the best sources
are fish oil, especially liver oil. Milk, butter and egg yolk are the only
foods in the ordinary diet that contain vitamin D.
150
Requirements
It is difficult to make standard recommendations for the dietary
requirements of vitamin D since the amount of vitamin D produced in
the body by the action of sunlight varies from person to person. Many
people may obtain this vitamin from sunlight. It is, however certain that
babies and growing children require more vitamin D than adults, due to
rapid growth and bone development.
Infants and children - 400 IU / day
Adults - 200 IU / day
Pregnant and
lactating women - 400 IU/day
Fat helps in the absorption of vitamin D and bile is essential for its
absorption. Vitamin D enters into the general circulation via lymph and
stored largely in liver and kidneys.
Deficiency
Children receiving an inadequate supply of vitamin D develop
rickets. Calcium and phosphorus are inadequately deposited in the
bones. Premature infants are more susceptible to rickets than full term
infants. In adults on inadequate supply of vitamin D causes
osteomalacia, a condition in which the bones become soft, weak and
painful.
8.2.1.3 Vitamin E
Vitamin E activity is possessed by a number of compounds known
as tocopherols. Among these compounds α-tocopherol is known as
vitamin E. Structurally vitamin E contains a dihydro benzopyran nucleus
with an isoprenoid side chain (Fig. 8.3). Many of them are pale yellow
oils soluble in fat.
151
CH3
OH
CH3
H3C O CH3
CH3 CH3 CH3 CH3
α-Tocopherol
Fig. 8.3 Structure of Vitamin E
Functions
The principal role of vitamin E appears to be as an antioxidant. By
accepting oxygen, vitamin E can prevent the oxidation of vitamin A in
the intestinal tract, thus making vitamin A available for body use. Vitamin
E also reduces the oxidation of the poly unsaturated fatty acids, thereby
helping to maintain normal cell membrane. It protects the red blood
cells against hemolysis. Vitamin E is required by animals, and presumably,
by humans for the normal reproductive processes. It also plays an
important protective role during ageing of cells.
Sources
Wheat germ oil and corn germ oil are the rich natural sources.
Vegetable oils and fats are good sources. Cereals and animal foods are
fair sources of tocopherol.
Requirements
It is difficult to establish vitamin E requirements. The requirement
depends mainly on the intake of poly unsaturated fatty acids. It is
generally accepted that the intake of vitamin E should be 0.4 mg
α -tocopherol equivalents / g dietary poly unsaturated fatty acid. This
does not present any problem, since all foods which are rich sources of
poly unsaturated fatty acids are also rich sources of vitamin E.
152
There is some evidence that higher intake of vitamin E may have a
useful protective effect against the development of ischaemic heart
disease. This is because high concentrations of vitamin E inhibit the
oxidation of poly unsaturated fatty acids in plasma lipoproteins and
this oxidation which is responsible for the initiation of atherosclerosis
(deposition of fat in the coronory artery walls). The levels that appear
to be beneficial are of the order of 17-40 mg α -tocopherol/day, which
is above what could be achieved by eating ordinary foods.
Adults : 25 - 30 mg / day
Vitamin E, like other fat soluble vitamins, is absorbed along with
fat in the intestines. It is stored in the liver, muscle and body fat.
Deficiency
Vitamin E deficiency cause the following disorders in animals.
i. Reproductive failure
ii. Hemolysis of red blood cells
iii. Muscular dystrophy
8.2.1.4 Vitamin K
Vitamin K is known as the antihemorrhagic vitamin.
Three compounds which have the biological activity of vitamin K are
a. Phylloquinone, which is the normal dietary source, being found
in green leafy vegetables.
b. Menaquinones, which are a family of closely related compounds
synthesized by the intestinal bacteria, with differing lengths of
the side chain.
c. Menadione, a synthetic compound which can be metabolised
to yield phylloquinone (Fig 8.4).
153
O
CH3
O
Menadione
Fig. 8.4 Structure of Menadione (Vitamin K)
Functions
Vitamin K is needed for the formation of prothrombin, a substance
necessary for blood clotting.
Intestinal bacteria normally synthesize substantial amount of vitamin
K. Because vitamin K is fat soluble, its absorption is facilitated in the
presence of bile. Small amount of vitamin k are stored in the liver, heart,
skin, muscle and kidneys.
Sources
The best source of vitamin K are the green leafy vegetables eg.
spinach, cabbage, kale etc. Good sources are cauliflower, wheat germ,
etc. Carrots and potatos are fair sources. Milk, meat and fish are poor
sources.
Requirements
Vitamin K requirement depends on the amount of vitamin K formed
by the intestinal bacteria. The more the endogenous vitamin K formation
less will be the dietary requirement.
Being fat-soluble, its absorption is enhanced by sufficient amount
of bile salts mainly in the jejunum by the way of lymphatics. Liver stores
appreciable amounts. It is present in blood stream in significant amount.
All tissues contain small amounts of vitamin K.
154
Deficiency
The deficiency of vitamin K leads to a lowering of prothrombin
level and increased clotting time of blood. This may lead to hemorrhagic
conditions. Vitamin K deficiency causes hemorrhagic disease of the
newborn.
8.2.2 Water soluble vitamins
The members of this group are B complex vitamins and
vitamin C. They are readily soluble in water.
8.2.2.1 B Complex vitamins
i. Thiamine (B1)
The structure of vitamin B1 is given in Fig. 8.5.
H3C N NH2 CH3

CH2-CH2-OH
N +
N
CH2
S
Thiamine (Vitamin B1)
Fig. 8.5 Structure of Vitamin B1

Functions
Thiamine is a coenzyme in many enzyme systems. These are
involved principally in the breakdown of glucose to yield energy.
Thiamine also aids in the formation of ribose, a sugar that is an
essential constituent of DNA and RNA, the carriers of the genetic code.
The adequate level of thiamine provides healthy nerves, a good mental
outlook, a normal appetite and food digestion.
Sources
Meats, especially pork and liver are rich in thiamine and account
for about one fourth of the average intake. Dry beans, peanuts and egg
are good sources.
155
Enriched and whole grain breads and cereals supply about one
third of the daily thiamine intake.
Requirements
The requirement of thiamine depends on energy expenditure.
Infants - 0.3 - 0.5 mg / day
Children - 0.7 -1.2 mg / day
Adults - 1.2 - 1.5 mg/day
Pregnant women
and lactating women - 1.3- 1.5 mg/day
Free thiamine is readily absorbed from the small intestine. Excess
thiamine administered is not stored in the tissues. A part of the excess
thiamine is excreted in urine and same of it is destroyed by the enzyme
thiaminase.
Deficiency
The symptoms of thiamine deficiency occur because the tissue cells
are unable to receive sufficient energy from glucose. Therefore, they
cannot carry out their normal functions.
Early symptoms of thiamine deficiency include fatigue, irritability,
depression and numbness of the leg and poor tone of the gastro intestinal
tract together with constipation.
Beriberi, sometimes called “rice-eaters disease” is another
deficiency symptom which is often seen in people whose chief diet is
refined rice and is the most severe form of thiamine deficiency.
156
ii. Riboflavin (B2)
Structurally vitamin B2 consists of a ribitol moiety and a substituted
isoalloxazine ring (Fig. 8.6). OH OH OH
CH2-CH-CH-CH-CH2OH
H3C N N O
NH
H3C N
Riboflavin O
Functions
Riboflavin is a constituent of a group of enzymes called
“flavoproteins”. As with thiamine, the enzymes are necessary in the
break down of the glucose to form energy. Riboflavin is essential for a
healthy skin and for good vision in bright light. If the individual ingest
more riboflavin than their body needs, the urinary excretion will increase,
if the intake is inadequate, the body maintains its supply very carefully
and the urinary excretion will practically stop.
Sources
About half of the intake of riboflavin daily is furnished by milk alone
and cheese is a good source, although some of the vitamin has been
lost in the whey.
Requirements
A more generous estimate of requirements is the level of intake at
which there is normalisation of the activity of the red cell enzyme
glutathione reductase, which is a flavoprotein whose activity is
especially sensitive to riboflavin nutritional status.
157
Infants - 0.4 - 0.6 mg / day
Children - 0.8 - 1.2 mg / day
Adults male - 1.5 -1.8 mg/day
Adults female - 1.1 - 1.4 mg/day
Pregnant women - 1.4 - 1.7 mg/day
Lactating women - 1.6 - 1.9 mg / day
The vitamin is phosphorylated in the intestinal mucosa during
absorption. It is absorbed from the small intestine through the portal
vein and is passed to all tissues being stored in the body. The major
part is excreted in urine and a small part is metabolized in the body.
Deficiency
Riboflavin deficiency leads to cheilosis, a cracking of the skin at
the corners of the lips and scaliness of the skin around the ears and
nose. There may be redness and burning as well as itching of the eyes,
and extreme sensitivity to strong light.
iii. Niacin (B3)
Niacin is pyridine-3-carboxylic acid (Fig. 8.7). It occurs in tissues
as nicotinamide.
COOH CONH 2
N
N
Nicotinic acid Nicotinamide
158
Functions
Niacin is required for the stepwise breakdown of glucose to yield
energy. Niacin is essential for the healthy skin, normal functions of the
gastro intestial tract and maintenance of the nervous system.
Sources
The meat group especially organ meats and poultry, is the chief
source of preformed niacin. Dark green leafy vegetables, whole grain,
enriched breads and cereals are fair sources.
Niacin is more stable to cooking procedures than thiamine or
ascorbic acid (Vitamin C).
Requirments
The recommended niacin allowance is 6.6 mg/1000 k cal. This
can be supplied by exogenous niacin in the diet and by the tryptophan,
an essential aminoacid that is the precursor of niacin.
Infants - 5 -8 mg / day
Children - 9 - 16 mg / day
Adults male - 16 - 20 mg/day
Adults female - 12 - 16 mg/day
Pregnant women - 14 - 18 mg/day
Lactating women - 16 - 20 mg / day
Nicotinic acid and nicotinamide are absorbed from the intestine
through the portal vein into the general circulation. Excess nicotinic acid
is not stored in the body.
Deficiency
Pellagra is the major deficiency disease resulting from the lack of
niacin. Dermatitis, especially of the skin exposed to the sun, soreness
of the mouth, swelling of the tongue, diarrohea, and mental changes
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including depression, confusion, disorientation, and delirium are typical
of the advancing stages of the disease, which ends to death if not treated.
(The disease is sometimes referred to as the “4D’S” - dermatitis,
diarrohea, dementia and death).
iv. Pyridoxine (B6)
Pyridoxine is 3-hydroxy 4,5 dihydroxy methyl 2- methyl pyridine
(Fig 8.8) The metabollically active form of vitamin B6 is pyridoxal
phosphate.
H2-C-NH2
CH2OH H-C = 0
HOCH2 OH
HOCH2 OH HOCH2 OH
N CH3
CH3 CH3
N N
Pyridoxamine
Pyridoxine Pyridoxal

Functions
Three forms of vitamin B6 exist in nature which are pyridoxine,
pyridoxal and pyridoxamine. The functions of vitamin B6 are closely
related to protein metabolism, the synthesis and breakdown of amino
acids, conversion of tryptophan to niacin, the production of antibodies,
the formation of heme in hemoglobin, the formation of hormones
important in brain function and others.
Sources
Meat especially organ meats, whole grain cereals, peanuts and
wheat germ are rich sources. Milk and green vegetables supply smaller
amounts.
Requirements
Although most of the body’s vitamin B6 is associated with glycogen
phosphorylase in muscle, this is relatively stable and well conserved.
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The requirement depends not on energy expenditure and glycogen
metabolism, but on the intake of protein. The average requirement is
13 µg/g dietary protein.
Infants - 0.3 mg / day
Children - 0.6 - 1.2 mg / day
Adults - 1.6 - 2 mg/day
Pregnant and
lactating women - 2.5 mg/day
Pyridoxine is readily absorbed from the small intestine. The excess
amount if ingested is not stored in the body but is excreted in urine.
Deficiency
Deficiency of vitamin B6 is extremely rare. Nervous disturbances
such as irritability, insomnia, muscular weakness, fatigue and convulsion
have been recorded in infants. The cause of the convulsions severe
impairment of the activity of the enzyme glutamate decarboxylase, which
is dependent on pyridoxal phosphate. The product of glutamate
decarboxylase is GABA (γ−amino butyric acid) which is a regulatory
neurotransmitter in the central nervous system.
v. Folic acid
Folic acid contains a pteridine group linked to para amino benzoic
acid and l-glutamic acid (Fig. 8.9). It is slightly soluble in water and
stable to heat.
N N
H2N
COOH
H
N CH2-N CO - NH - CH
N
OH (CH2)2
Folic acid
COOH
Fig. 8.9 Structure of Folic acid
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Functions
i. Folic acid serve as coenzymes in reactions involving the transfer of
one carbon units like formyl and methyl groups.
ii. It participates in the reactions concerned with the synthesis of
purine, pyrimidine and nucleic acids.
iii. It is essential for maturation of red blood cells.
iv. Folic acid is required for the metabolism of amino acids like histidine.
v. Along with vitamin B12, folic acid helps in the trans methylation
reactions. eg: uracil to thymine.
Sources
Folic acid is particularly present in green leafy vegetables, cauliflower
and dried yeast. Egg, liver and kidneys are rich animal sources.
Requirements
There is no definite requirement for normal human being. However,
an increased amount is required during pregnancy and lactation.
Infants - 50 µg / day
Children - 100 - 300 µg / day
Adults - 400 µg/day
Pregnant women - 800 µg / day
Lactating women - 600 µg/day
Absorption of folic acid takes place along the whole length of the
mucosa of the small intestine. Folic acid about (5-15 mg/g) is in the
liver and folate is also incorporated into the erythrocytes during
erythropoiesis (Red blood cells production).
Deficiency
Deficiency of vitamin B12 also leads to functional folic acid deficiency.
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i. Folic acid deficiency leads to megaloblastic anemia characterised
by the release of large sized immature red blood cells into the
circulation.
ii. Sprue and symptoms like glossitis and gastro intestinal disturbances
have also been reported.
iii. Macrocytic anemia of pregnancy responds to treatment with folic
acid.
vi. Vitamin B12
Structure of vitamin B12
Structurally, vitamin B12 consists of a corrin nucleus attached with
5,6 dimethyl benzimidazole moitey, an isopropanol unit, a ribose unit
and a phosphate group. A cobalt atom (Co) is present at the centre of
the corrin ring structure. One of the valencies of cobalt is filled by
either CN- (cyano cobalamin) or H2O (aqua cobalamin) or OH-
(hydroxo cobalamin) or CH3 (methyl cyano cobalamin).
Functions
Of all vitamins, vitamin B12 is the most complex. The trace mineral
cobalt is an essential part of the molecule. Vitamin B12 is required for
the maturation of red blood cells in the bone marrow and for the synthesis
of proteins.
Sources
Milk, eggs, cheese, meet, fish and poultry supply ample amounts
of vitamin B12. Plant foods supply no vitamin B12 and use of an exclusively
vegetarian diet for a long period of time will lead to symptoms of
deficiency.
Requirements
Early estimates of vitamin B12 requirements were based on the
amounts required to maintain normal RBC maturation in patients with
pernicious anemia due to lack of intrinsic factor secretion. There is a
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considerable enterohepatic circulation of vitamin B12. It is secreted in
the bile and re-absorbed in the small intestine. However, in patients
with defective secretion of intrinsic factor, the vitamin cannot be
re-absorbed, but is excreted in the feces. This means that patients with
impaired secretion of intrinsic factor have much higher requirement for
vitamin B12 than normal.
The average requirement of vitamin B12 is 3 µg/day.
Infants - 0.3 µg / day
Children - 1 - 2 µg / day
Adults - 3 µg/day
Pregnant and
lactating women - 4 µg / day
Absorption and Storage
For the absorption of vitamin B12 from the intestines, a factor called
“Intrinsic Factor” (IF) secreted by the stomach is essential. Vitamin B12
is stored in fair amounts in the liver.
Deficiency
Pernicious anemia is the disease resulting from vitamin B12
deficiency. It is a genetic defect with the absence of intrinsic factor,
hence the vitamin B12 in the diet cannot be absorbed. Since vitamin B12
is important for the maturation of red blood cells the deficiency of this
vitamin leads to the formation of macrocytic red blood cells.
vii. Pantothenic acid (B5)
The structure of pantothenic acid consists of an alanine chain in
peptide linkage with dihydroxy, dimethyl butyric acid (Fig. 8.10).
Pantothenic acid is highly soluble in water.
164
CH3
HO H2C C CH C NH CH2 CH2 COOH
CH3 OH O
Pantothenic acid
Fig. 8.10 Structure of (Vitamin B5 ) Pantothenic acid

Functions
Pantothenic acid exists in the free form and in combination with
β− mercapto ethylamine, adenine ribose and phosphoric acid. The later
form is called as co-enzyme A (CoA).
The metabolic functions of pantothenic acid are due to its coenzyme
derivative CoA, which participates in several metabolic reactions.
CoA gains further importance after its conversion to form acetyl
CoA.
i. Acetyl - Co A plays a key role in carbohydrate, protein and
lipid metabolism.
ii. Acetyl - Co A is the precursor of cholesterol. It is the main
source for the synthesis of cholesterol as well as steroid
hormones.
iii. Acetyl - Co A combines with choline to form acetyl choline.
iv. Some of the amino acids require Co A for their activation.
Sources
Dried yeast, liver, royal gelly are the rich sources of pantothenic
acid. Egg yolk, meat, fish, milk are good sources.
Requirements
The recommended daily allowance of pantothenic acid as follows:
Infants - 1.5 - 2.5 mg/day
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Children - 5 - 8 mg/day
Adults - 5-12 mg/day
Pregnant and
lactating women - 10-15 mg/day.
Absorption and sotrage
Pantothenic acid and its salts are readily absorbed from the small
intestine through the portal vein into the general circulation. If ingested
in excess of the requirements, it is not stored in the body; but is excreted
in urine or metabolised by the tissues.
Deficiency
Deficiency of this vitamin results in nausea, vomitting, certain gastro
intestinal tract disorders, inadequate growth, anemia, fatty liver and
failure in gaining weights.
viii. Biotin
Biotin is a heterocyclic, sulphur containing monocarboxylic acid
(Fig. 8.11). Biotin is sparingly soluble in cold water and is freely soluble
in hot water.
H N N H
H C C H
H 2C CH (CH 2 ) 4 -C OOH
Fig. 8.11 Structure of Biotin
166
Functions
i. Biotin is required as the co-factor for a small number of
carboxylation reactions, it acts as the carrier for carbon dioxide.
CO2 Acetyl CoA
carboxylase
eg. Acetyl CoA Malonyl CoA.
ii. It helps to maintain the skin and the nervous systems in good
condition.
iii. It assists in the deamination of amino acids like aspartic acid,
serine and threonine.
iv. It helps in the synthesis of purine.
v. For the conversion of ornithine to citrulline in the synthesis of
urea, biotin is required.
Source
Biotin occurs widely both in foods of vegetable and animal origin.
Wheat germ, liver, peanut, and rice polishings are rich sources. Whole
cereals, legumes, mutton and egg are good sources.
Requirements
Since, intestinal bacteria and diets supply biotin in adequate amounts
the deficiency of this vitamin in human being is rare.
Infants - 10- 15 µg/day
Children - 20-40 µg/day
Adults - 50-60 µg/day
Absorption and Storage
Biotin is readily absorbed from the small intestine through the portal
vein into the general circulation. Excess of the requirements is not stored
in the body but is mostly excreted in the urine.
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Egg white injury factor (Avidin)
There is a protein in egg white called avidin which is responsible
for producing egg white injury. Avidin binds with biotin tightly in the
intestinal tract and prevents absorption of biotin from intestines. Avidin
is denatured by cooking and then loses its ability to bind with biotin.
The amount of avidin in uncooked egg white is relatively small, and
problems of biotin deficiency have only occurred in people eating
abnormally large amounts of raw eggs for many years.
Deficiency
Deficiency of biotin is rare in human beings.
8.2.2.2 Vitamin C (Ascorbic Acid)
Vitamin C is also called as ascorbic acid (Fig. 8.12).
O C
HO C
O
HO C
H C
HO C H
CH 2 OH
L-ascorbic acid
Fig. 8.12 Structure of Vitamin C
Functions
i. Vitamin C is essential for building collagen the connective tissue
protein which cements the cells and tissues together. The effect
of this material is to provide firm tissues of all kinds. This vitamin
helps forming strong blood vessels, teeth firmly held in their sockets,
and bones firmly held together.
168
ii. It has a general antioxidant role, especially in the regeneration of
oxidized vitamin E in membranes.
iii. Ascorbic acid reduces the ferric ion (Fe3+) to ferrous (Fe2+) ion
and thus helps in the absorption of iron. It is also essential for
rapid healing of wounds.
Sources
Raw fresh vegetables contain vitamin C, but some foods are more
outstanding than others. Orange, grape, lime and lemon are especially
rich in vitamin C.
Requirements
Recommended amount of vitamin C for different age group is as
follows:
Infants - 35 mg / day
Children - 40 mg / day
Adults - 45 mg / day
Pregnant women - 60 mg / day
Lactating women - 80 mg / day
Ascorbic acid is rapidly absorbed from the intestines and passed
on through the portal vein to the general circulation. Liver and other
organs and tissues have an optimal level of ascorbic acid. Excess intake
do not increase further the optimal levels.
Deficiency
Severe deficiency of vitamin C leads to scurvy. This is characterised
by easy bruising and hemorrhaging of the skin, lossening of the teeth,
bleeding of the gums and distruption of the cartilages that support the
skeleton.
169
8.2.3 Co-enzymic functions of Vitamins
Some of the B-complex vitamins act as co-enzymes for several
enzymatic reactions as detailed below:
Table 8.1 The co-enzymic functions of Vitamins
S.No. Name of the Name of the Name of the enzyme

coenzyme Vitamin and the reaction
involved
1 . Thiamine pyrophosphate Thiamine Pyruvate decarboxylase

(TPP) (B1) (Aldehyde group transfer)
2. Flavin adenine Riboflavin Succinate dehydrogenase
dinucleotide (FAD) (B2) (Oxidation and
reduction)
3. Nicotinamide Niacin Lactate dehydrogenase
adenine dinucleotide (B3) (Oxidation and reduction)
(NAD)
4. Nicotinamide adenine Niacin Glucose-6-phosphate
dinucleotide phosphate (B3) dehydrogenase
(NADP) (Formation of
phosphoesters)
5. Pyridoxal phosphate Vitamin Aspartate amino
(B6) transferase
(Amino group transfer)
6. Tetra hydro folate Folic acid S-adenosyl trans methylase
(FH4) (Methyl group transfer)
7. Co-enzyme A Pantothenic Pyruvate dehydrogenase
acid (B5) (Acylation)
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Exercise
I. Choose the correct answer from the given alternatives
a. Vitamin A is essential for the formation of
i. Rhodopsin ii. Bone
iii. Haemoglobin iv. Hormones
b. Cholecalciferol is
i. Vitamin D3 ii.Vitamin B1 iii. Biotin iv. Vitamin A
c. The vitamin which shows anti hemorrhagic action is
i. Vitamin K ii. Vitamin B6 iii.Vitamin E iv. Vitamin C
d. The coenzymic form of pantothenic acid is
i. Coenzyme A ii. Tetrahydro folate
iii. Biotin iv. Pyridoxal phosphate
e. Avidin interferes with the absorption of
i. Biotin ii. Vitamin A iii. Vitamin C iv. Vitamin B12

a. ........................ vitamin is essential for bone formation.
b. The compounds which posses vitamin E activity are known as
............................
c. The vitamin essential for blood clotting action is ..................
d. The main coenzyme which is involved in the transfer of one
carbon compound is ...................
e. For normal collagen biosynthesis the vitamin required is
.................
a. Some vitamins act as coenzymes
b. Vitamin D is fat soluble
c. Vitamin B is water soluble
171
d. FAD is derived from vitamin B12
e. Pyridoxal phosphate is involved in amino group transfering
reactions
a. Vitamin A - Thiamine pyrophosphate
b. Vitamin B1 - Pernicious anemia
c. Vitamin B12 - Calcium absorption
d. Vitamin E - Vision
e. Vitamin K - Collagen synthesis
f. Vitamin D - Antioxidant
g. Vitamin C - Blood clotting
V. Give short answer for the followings
a. Differentiate the two types of vitamins.
b. What are the symptoms of vitamin A deficiency?
c. What are the effects of vitamin D deficiency?
d. What are the coenzymic functions of pyridoxine?
e. Give the functions of pantothenic acid?
a. Explain the co-enzymic functions of B complex vitamins.
b. Mention the fat soluble vitamins and their functions.
c. Give the classification of vitamins.
d. Explain the requirements and the deficiency symptoms of
vitamin A and vitamin E.
e. Explain the requirements and the deficiency symptoms of
vitamin C and vitamin B12.
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CHAPTER 9
MINERALS
9.1 Introduction
Mineral elements are inorganic substances. They are found in all
body tissues and fluids. They are supplied by the diet as their salts; for
example, sodium chloride. They may also be combined with organic
compounds like iron in hemoglobin and sulphur in almost all proteins.
Unlike carbohydrates, fats and proteins, mineral elements do not furnish
energy but they may influence the rate of biological reactions through
enzymes.
The mineral elements are not destroyed in food preparations un like
vitamins. However, they are soluble in water so that some loss will
occur if cooking liquids are discarded.
9.2 Classification
Minerals are classified into two main groups : macro elements and
micro elements. Macro elements are required in large amount (>100
mg/day) and present in large quantities in the body, whereas micro
elements are required in small quantity (<100 mg/day) and also present
in small amount in tissues and body fluids.
9.2.1 Macro elements or Bulk elements
Some of the macro elements are calcium, phosphorus, sodium,
potasium, chlorine (as chloride), magnesium and sulphur.
9.2.1.1 Calcium
Functions
i. About 99% of the body calcium is found in the bones and teeth
where it is combined with phosphorus and other elements to give
rigidity to the bone.
173
ii. The bones also serve as the store house for calcium which is needed
for a number of cellular functions.
iii. Calcium is required for the complex process of blood coagulation.
iv. Together with other elements it regulates the passage of ions into
and out of cells.
v. It controls the transmission of nerve impulses, brings about the
normal contraction of muscles, including the heart.
vi. It also activate certain enzymes like adenosine triphosphatases,
succinate dehydrogenase etc.
Distribution of calcium
Calcium is distributed in the body as follows:
Serum - 9-11 mg/100 ml
C.S.F - 4.5-5 mg/100 ml
Muscle - 70 mg/100 gm
Nerve - 15 mg / 100 gm
Calcium content of blood
The calcium content of plasma is fairly constant ranging from 9-11
mg/100 ml. This level is maintained constant in healthy individuals by
the following factors: (i) the amount of calcium absorbed from food
through the intestine and (ii) the secretion of parathyroid hormone which
controls the level of calcium in blood.
Sources
Milk and cheese are rich sources of calcium. Egg yolk, cabbage,
beans and cauliflower are good sources.
Requirements
Growing children require more amount of calcium, because of the
increased rate of growth.
174
Infants - 0.36-0.54 g/day
Children - 0.8-1.2 g/day.
Adults - 0.8 g/day.
During pregnancy and lactation - 1.5 g/day
Absorption and excretion
Calcium is taken in the diet as calcium salts of phosphate, carbonate,
tartrate and oxalate. Calcium is actively absorbed in the upper small
intestine. Calcium is excreted in the urine, bile and digestive secretions.
Factors affecting calcium absorption
Some of the factors which influence the absorption of the calcium
in the intestine are:
Vitamin D
Vitamin D promotes absorption of calcium.
Protein
High level of proteins in the diet helps to increase the absorption of
calcium.
pH
Acidic environment in intestine favours calcium absorption.
Lactose
Lactose in chief increase the absorption of calcium. The beneficial
effect of lactose is due to increased acidity (lactic acid) of the intestinal
content which leads to increased calcium absorption.
Phosphates
Excess of phosphate in diet lowers the calcium absorption. The
ratio of calcium and phosphorus in the diet should be 1:1.
175
Fats and fatty acids
Faulty absorption of fats leads to the presence of large amounts of
fatty acids in the intestine were interferes with calcium absorption, as
fatty acids form insoluble salt with calcium which are excreted in the
feces.
Oxalic acid
Oxalic acid present in certain food forms insoluble calcium oxalate
which is excreted in the feces and interfere with the calcium absorption.
Calcium balance
Dietary calcium which is not absorbed in the intestine is excreted in
the feces. A small part of the absorbed calcium is excreted in urine.
The calcium balance i.e. the difference between the quantity of calcium
ingested and that excreted in urine and feces.
Deficiency
Calcium deficiency becomes evident only after a long period of
inadequate intake. A dietary deficiency does not lower the blood calcium
since the bones will supply the amount required. Rickets (in children)
is a disease more directly related to vitamin D deficiency, but calcium
and phophorus metabolism are also involved. Tetany and osteomalacia
(in adults) are the diseases result from the deficiency of calcium.
9.2.1.2 Phosphorus
Functions
Probably no mineral element has more functions than phosphorus.
It is essential for the formation of
i. bones and teeth.
ii. phospholipids that regulates the absorption and transport of fats.
iii. DNA and RNA, which are nucleic acids essential for protein
synthesis and genetic coding.
176
iv. ATP and ADP, which are necessary for storing and releasing energy
according to the body needs.
v. enzymes that are required to metabolise carbohydrates, fats, and
proteins and
vi. buffer salts in the regulation of acid-base balance.
Blood content of phosphorus
The inorganic phosphorus content of blood in normal human adults
ranges from 2.5 to 4.0 mg /100 ml and in children from 4 to 5 mg/
100 ml.
Sources
This element is found in both animal and plant foods. Animal sources
include fish, meat, egg, milk, liver and kidneys. Plant sources of
phosphorus are nuts, beans, green vegetables and fruits. A diet which
is adequate in calcium is usually adequate in phosphorus also.
Requirements
Infants - 0.24-0.4 g/day
Children - 0.8 -1.2 g/day
Adults - 0.8 g/day
During pregnancy and lactation - 1.5 g/day
Moderate amounts of fatty acid favour absorption of phosphorus.
High calcium content in diet decreases the absorption of phosphorus.
Phosphorus is excreted in the urine and feces.
Deficiency
A deficiency of phosphorus leads to rickets. Low level of blood
phosphorus characterised by defective bone and teeth formation.
177
9.2.1.3 Sodium
Functions
i. It is the major component of the cations of extracellular fluid and
exists in the body in association with the anions like chloride,
bicarbonate, phosphate and lactate.
ii. Sodium ion is mainly associated with chloride and bicarbonate in
the regulation of acid-base equilibrium. It maintains osmotic pressure
of the body fluids and thus protects the body against excessive
fluid loss.
iii. It plays an important role in the absorption of glucose and nutrients
from small intestine.
iv. Sodium ions are involved in the maintenance of heart beat.
v. It maintains the normal neuromuscular functions and it functions in
the permeability functioning of the cells.
Blood content of sodium
The normal level of sodium in blood is 310-340 mg/100 ml of
blood. Red blood cells contain no sodium ions.
Sources
Sodium chloride (Common salt) is the main source of sodium.
Bread, cheese and wheat germ are rich sources. Cauliflower, carrot
and milk are also good sources of sodium.
Requirements
For adults the daily requirement is 5 - 10 grams/day.
Sodium is completely absorbed from the gastro intestinal tract.
About 95% of the sodium leaving the body is excreted in the urine
since sodium is easily absorbed in the intestine.
178
Deficiency
Adrenal gland secretes hormones called adrenocortical steroids
which regulates the metabolism of sodium. In the insufficiency of
adrenocortical steroids the serum sodium level is decreased with an
increase in sodium excretion. Hyponatremia (Addison’s disease) the
condition in which sodium level of blood is below normal and in
hypernatremia (Cushing’s syndrome) the sodium level of blood is above
the normal range.
9.2.1.4 Potassium
It was given the name potassium because it was obtained from
potash. It is an indispensible constituent of the body cells.
Functions
i. Potassium is an important intracellular cation and needed for all
cellular functions.
ii. It maintains the alkalinity of the bile and blood.
iii. It plays an important role in the regulation of acid-base balance in
the cell.
iv. It influences cardiac muscle activity.
v. The glycolytic enzyme pyruvate kinase requires potassium for its
maximal activity.
Sources
Most foods contain potassium. Animal sources include meat, fish ,
egg, milk, cheese. Vegetables like onion and carrot, fruits like banana,
grapes and legumes such as beans also contain potassium.
Requirements
The normal intake of potassium in food is about 4 gm/day.
179
Normally potassium is completely absorbed from the gastro
intestinal tract and it is normally eliminated almost entirely in the urine
and a small amount in the feces.
Deficiency
Deficiency of potassium leads to depression in cardiac and nervous
system. Severe vomitting, diarrhoea, loss of appetite, fasting or
starvation over a long period of time, may lead to deficiency of
potassium. It also occurs during renal failure and shock. Fatigue,
muscular weakness, heart and respiratory dysfunction are common signs
of potassium deficiency.
9.2.1.5 Chlorine
Functions
i. As a component of sodium chloride (NaCl), chloride ion is an
essential for acid-base equilibrium.
ii. Chloride ion regulates the water balance and osmotic pressure.
iii. It is also important in the production of hydrochloric acid in the
gastric juice.
iv. Chloride ion is important as an activator of amylase enzyme.
Sources
Sodium chloride is the main source for chlorine.
Requirements
The requirements of sodium chloride depend on the climate and
occupation and on the salt content of the diet. Animal foods contain
more NaCl than those of plant foods. Normal requirement of chloride
is 5-10g /day as NaCl.
Chloride is completely absorbed from the gastro intestinal tract.
Chloride is mainly eliminated in the urine and also in the sweat.
180
Deficiency
Chloride deficiency occurs when loss of sodium is excessive in
diarrhoea, sweating and some endocrine disturbances.
9.2.1.6 Magnesium
Functions
About 70 percent of the total magnesium content of the body is
combined with calcium and phosphorus in the complex salts of bone.
The reminder is in the soft tissues and body fluids. It is the principal
cation of the soft tissues. Magnesium ions act as an activators for many
of the phosphate group transferring enzymes and it also functions as a
co-factor for oxidative phosphorylation.
Blood content of magnesium
The normal level of magnesium in blood is 1-3 mg/100 ml.
Sources
Milk, egg, cauliflower, cabbage and fruits are rich sources of
magnesium.
Requirements
Infants - 100-150 mg/day
Children - 150 -200 mg/day
Adults - 200-300 mg/day
Like calcium the salts of magnesium are rather insoluble and greater
part of the daily ingested magnesium is not absorbed. Parathyroid
hormone increases the magnesium absorption. Very high intake of fat,
phosphate and calcium decrease the absorption of magnesium.
The major quantity of magnesium is excreted in the feces and
remaining is excreted through urine.
181
Deficiency
Magnesium deficiency causes depression, muscular weakness, and
liability to convulsions.
9.2.1.7 Sulphur
Functions
Sulphur is present in the amino acids such as methionine, cystine
and cysteine. Thus, it is present in all proteins in the body. Especially
connective tissue, skin, hair and nails are rich in sulphur. Also thiamine
and biotin which are B-complex vitamins contain sulphur in their
molecules.
Sources
Sulphur intake is mainly in the form of cystine and methionine
present in protein. Other compounds present in the food contribute
small amounts of sulphur.
Requirements
A diet that is adequate in protein supplies required amounts of
sulphur.
Inorganic sulphate (So42-) is absorbed as such from the intestine
into the portal circulation. Sulphur is excreted in the urine.
Deficiency
No specific sulphur deficiency has been observed in human beings.
9.2.2 Micro elements or Trace elements
The important micro elements essential for normal body functions
are iron, copper, iodine, fluorine, zinc, cobalt, manganese, chromium,
molybdenum, selenium etc.
182
9.2.2.1 Iron
Functions
The total content of iron in the adult body is only 3 to 5 grams.
Most of the iron is present in hemoglobin, a protein that consists of an
iron-containing compound, heme, attached to a protein globin.
Hemoglobin is carried in the circulation by the red blood cells. It picks
up oxygen in the lungs and transports the oxygen to the tissues so that
oxidation reactions can take place in the cells. From the cells the
hemoglobin carries CO2 to the lungs to be exchanged.
Myoglobin is an iron-containing protein similar to hemoglobin and
is present in muscle tissue. Iron is also a constituent of many enzymes
that are required for oxidation of glucose and fatty acids for energy
production.
Sources
Among the richest animal sources of iron are beef, liver, heart,
kidneys, spleen, egg yolk and land snail. Plant sources of iron include
whole wheat and its products, green vegetables, onions, coconuts and
fresh fruits.
Requirements
Iron requriements are influenced by the availability of iron present
in foods. Iron present in cereals, legumes and green leafy vegetables is
available to a lesser extent than that present in egg, meat and fish. In
view of this, iron requriements of persons consuming a predominantly
cereal based diet, will be greater than those consuming large quantities
of meat and egg. About 10 percent of the ingested iron is only absorbed.
Children - 15 mg/day
Adults - 18 mg/day
During pregnancy and lactation - 40 mg/day.
183
Under normal conditions, very little dietary iron is absorbed which
take place mainly in the stomach and the duodenum. Infants and children
absorb a higher percentage of iron from food than adults. Iron deficiency
in infants is due to a dietary deficiency. Iron deficient children absorb
twice as much as that of normal children.
The body stores of iron are conserved very efficiently. Only lesser
amounts are excreted in the urine, feces and sweat.
Factors affecting iron absorption
i. Impaired iron absorption takes place in patients who have total
removal of stomach or a removal of the considerable amount of
the intestine.
ii. A diet high in phosphate causes decreased absorption due to the
formation of insoluble ferric phosphate.
iii. Phytic acid and oxalic acid interfere with absorption.
iv. Vitamin C increases absorption.
v. Alcohol ingestion favours iron absorption.
Deficiency
Insufficient iron in the diet causes iron deficiency anemia. This is
common in growing children and pregnant women. Insufficiency may
be brought about by blood loss during menstruation, inadequate intake
of iron and hookworm infestation.
9.2.2.2 Copper
The importance of copper for the formation of hemoglobin was
studied by Hart and co-workers in 1928. Later studies indicated that
copper has many functions.
184
Functions
i. Copper is essential for the synthesis of hemoglobin.
ii. It is needed for the synthesis of collagen, melanin and phopholipids.
iii. It is a constituent of several enzymes.
iv. Three copper containing proteins namely cerebrocuprein, erythro
cuprein and hepatocuprein are present in brain, RBC and liver
respectively.
Sources
Copper is present in minute quantities in most foods, including liver,
kidneys, shell fish and meat. Plant sources of copper are nuts and
legumes.
Requirements
Daily requirement of copper is 0.05 - 0.85 mg/kg body weight for
children and 2 mg/day for adults.
Absorption of copper into the blood stream occurs via the villi of
the small intestine. About 30 percent of the dietary copper is absorbed
in the duodenum. Only 10 - 60 µg of copper is excreted in normal urine
in 24 hours.
Deficiency
i. In human beings the only condition observed is anemia due to copper
deficiency.
ii. Copper deficiency produces marked skeletal changes, osteoporosis
and spontaneous fractures.
iii. Elastin formation is impaired in copper deficiency.
185
9.2.2.3 Iodine
Functions
Most of the body iodine is present in the thyroid gland, but all cells
contain trace amount of iodine. Iodine is a constituent of two hormones,
thyroxine (T4) and triiodothyroxine (T3). These hormones (i) regulate
energy metabolism, (ii) synthesis of proteins and cholesterol and in the
conversion of carotene to vitamin A.
Sources
The amount of iodine in plant food depends on whether or not
iodine was present in the soil in which the plants were grown. Vegetables
grown in iodine-rich soil will naturally be the good sources of iodine.
The animal sources of iodine include milk, sea fish, shell fish and crabs.
Requirements
For adults are about 0.10 to 0.15 mg/day for infants and children
0.05 to 0.10 mg/day. This is normally supplied by an ordinary well
balanced diet and by drinking water except in mountainous regions
where the food and water are deficient in iodine content. Drinking and
cooking water often contain iodine in sufficient quantities to provide the
daily requirement. Iodised salt may be added when cooking foods in
areas with insufficient natural sources of iodine.
Adults - 100-150 µg/day
Pregnant women - 200 µg/day
Absorption is through the villi of the small intestine into the blood
stream and 90 percent of the iodine of the thyroid gland is in organic
combination and stored in the follicular colloids as thyroglobulin.
Inorganic iodine is mostly excreted by the kidneys, liver, skin, lungs
and intestine and in milk. About 10 percent of circulating organic iodine
is excreted in feces.
186
Deficiency
A deficiency of iodine leads to a decreased production of thyroxine,
and inturn a lowered rate of energy metabolism. In an attempt to produce
more thyriod hormones the thyroid gland enlarges. This condition is
called simple or endemic goiter. In a mild deficiency the only symptom
noted is slight enlargement of the thyroid gland visible at the neckline.
However, if the condition persists, the women who has a simple goiter
and who fails to get sufficient iodine during pregnancy will be unable to
supply the fetus with its needs: thus, the baby is more severely affected
than its mother.
People born in areas which lack of iodine in the water and soil
have a tendency to develop ‘goitre’, a condition characterised by
subnormal metabolic activities. The condition may be reversed if treated
sufficiently with iodine at the early stage itself.
9.2.2.4 Fluorine
Functions
Fluorine exists in the body in compounds called fluorides.
i. Lesser amount of fluoride enter into the complex calcium salts that
form tooth enamel.
ii. Fluorides may also be useful in maintaining bone structure. It is
necessary for the prevention of dental caries.
iii. Fluoride ions inhibit the metabolism of oral bacterial enzymes and
diminish the local production of acids which are important in the
production of dental caries.
iv. It is in combination with vitamin D, required for the treatment of
osteoporosis.
Sources
The chief source of fluorine is in the form of fluoride in drinking
water.
187
Requirements
Fluorine is found is small amounts in normal bones and teeth. Since
water containing 1-2 ppm (Parts per million) prevents dental caries
and does not do any harm, the fluorine requirements of the body are
met by the quantity normally present in drinking water (1-2 ppm) in
most of the regions.
Absorption of fluoride is via the small intestine into the blood stream.
Fluoride is excreted in the urine and in the sweat, and by intestinal
mucosa. Most of the fluorides that are not retained by the bones and
teeth is excreted rapidly into the urine.
Deficiency
The absence of fluorine in the diet causes dental caries.
Toxicity
Excess of fluorine (above 5 ppm) causes chalky white patches on
the teeth. If this is not treated in time, the patches change to a brown
colour which later develop into holes.
9.2.2.5 Zinc
About 2 to 3 grams of zinc are found in the body. Like iron, zinc is
absorbed according to the body needs.
Functions
i. Normal growth and sexual maturation.
ii. As part of an enzyme that transfers carbon dioxide from tissues
to the lungs.
iii. The production of insulin by the pancreas.
iv. Synthesis of proteins.
v. Normal sensitivity to taste.
188
Sources
Zinc is widely distributed in animal and plant foods that are good
sources of protein. Meats, egg, liver, sea food, legumes, nuts, milk
wholegrain and cereals are good sources. People who eat a normal
diet adequate in protein are not likely to develop zinc deficiency.
Requirements
Daily requirements of zinc are given below.
Children - 10-15 mg/day
Adults - 15 mg/day.
During pregnancy and lactation - 20-25 mg/day.
Zinc present in animal foods are well absorbed in the small intestine,
especially from the duodenum. Zinc present in plant foods are poorly
absorbed due to the presence of phytic acid which interferes with its
absorption. Zinc is mostly excreted in the feces.
Deficiency
The diet that has low zinc level leads to dwarfism and retarded
sexual development. Zinc deficiency leads to diminished senstivity to
taste (hypogeusia) and to a decrease in odour sensitivity (hyposmia).
9.2.2.6 Cobalt
Functions
Cobalt occurs in small amount in all tissues, higher concentrations
occuring in liver and kidneys. Most of the cobalt is present in vitamin
B12 which is necessary for red blood cells maturation.
Sources
It is largely available in food.
189
Requirements
Cobalt deficiency has not been observed in human beings. Cobalt
requirements, if any, appear to be met by traces of cobalt found in
foods. Human beings require a dietary source of vitamin B12 which is
not synthesized by the body.
Cobalt is readily absorbed from the small intestine. About 65% of
ingested cobalt is excreted in the urine and the remainder in the feces.
Deficiency
Cobalt deficiency is rare in human beings.
9.2.2.7 Manganese
Functions
i. Manganese is essential for normal bone structure, reproduction
and the normal functioning of the central nervous system.
ii. Manganese activates isocitrate dehydrogenase and
phosphotransferases.
iii. Pyruvate carboxylase and superoxide dismutase contain tightly
bound manganese.
iv. Manganese ions activate glycosyl transferases which is concerned
with synthesis of muco polysaccharides of cartilages and also
associated with the synthesis of glycoproteins.
v. Arginase an enzyme which is involved in the urea cycle is activated
by manganese ions.
Sources
Nuts and whole grains are rich sources and vegetables and fruits
are good sources of manganese.
Requirements
The average dietary intake of 2.5 to 9.0 mg/day is sufficient to
meet the daily needs.
190
Manganese is readily absorbed in the small intestine. Normally
3 to 4 percent of manganese present in the diet is absorbed. Large
quantity of manganese is excreted mostly in the feces. Only very small
quantities of manganese is excreted in the urine.
Deficiency
The deficiency of manganese leads to impaired growth and skeletal
abnormalities.
9.2.2.8 Chromium
Chromium occurs in trace amounts in human and animal tissues.
Functions
Chromium plays an important role in carbohydrate, lipid and protein
metabolism. It potentiates the action of insulin in accelerating the
utilization of glucose.
Sources
It is highly available in average diets.
Requirements
The exact requirements are not known. Average diets can meet
the chromium requirements.
It is readily absorbed in the small intestine. It is mobilized from the
tissues in response to glucose administration. Chromium is mainly
excreted in urine, a small amount in bile and feces.
Deficiency
Chromium deficiency is characterised by impaired growth and
disturbances in glucose, lipid and protein metabolism.
191
9.2.2.9 Molybdenum
Molybdenum also occurs in traces in human and animal tissues.
Functions
Molybdenum is an essential component of the xanthine oxidase. It
is also present in nitrate reductase in plants, and nitrogenase, which
functions in nitrogen fixation by micro organisms. Trace amount of
molybdenum are requried for the maintenance of normal levels of xanthine
oxidase in animal tissues.
Source
It is available in average diets.
Requirements
Adequate amounts of molybdenum are present in average diets.
Hence, exact requirement is not known.
About 50 to 70 percent of the ingested molybdenum is readily
absorbed in the small intestine. About half of the absorbed molybdenum
is excreted in urine.
Deficiency
Molybdenum deficiency is rare in human beings.
9.2.2.10 Selenium
Selenium is present in foods of plant origin grown in selenium rich
soils.
Functions
Selenium is essential for normal growth, fertility and for the
prevention of a wide variety of diseases in animals. Selenium is a
constituent of the enzyme Glutathione peroxidase (GPx), a selenoprotein.
This enzyme is the protective agent against the accumulation of H2O2
192
(Hydrogen peroxide), and organic peroxides within cells. It is involved
in immune mechanisms, ubiquinone synthesis and mitochondrial ATP
biosynthesis. Selenium has close metabolic relationship with vitamin E
for curing certain diseases.
Sources
Selenium is largely present in different foods. The variation depends
on the selenium content of the soil.
Requirements
Any normal diet can meet the daily requirement of selenium.
Deficiency
Selenium deficiency is very rarely seen in human beings.However,
necrosis and muscular dystrophy are associated with selenium deficiency.
Exercise
a. Minerals
i. Furnish energy ii. Enhance the rate of enzyme action
iii. Are insoluble in water iv. Are organic substances.
b. Calcium activates enzyme
i. Carboxy peptidase ii.Succinate dehydrogenase
iii. Hexokinase iv. Lipase
c. This mineral is involved in acid-base balance
i. Phosphorus ii. Calcium
iii. Selenium iv. Cobalt
d. Common salt is
i. Sodium chloride ii. Potassium chloride
iii. Magnesium chloride iv. Manganese chloride
193
e. Iodine deficiency leads to
i. Tetany ii. Hypernatremia
iii.Goitre iv. Anemia
II. Fill in the blanks
a. Iron deficiency leads to .......................
b. ..................... vitamin promotes calcium absorption.
c. Zinc is present in the structure of the enzyme ................
d. The micro element present in glutathione peroxidase ............
e. Cobalt is present in the vitamin ...................
a. Minerals furnish energy to the body
b. Calcium is a micro element
c. Selenium is a macro element
d. Cereal rich food interferes with calcium absorption
e. Fluoride deficiency leads to dental caries.
a. Calcium - Hemoglobin formation
b. Iron - Common salt
c. NaCl - Bone formation
d. Fluorine - Glutathione peroxidase
e. Selenium - Goitre
f. Iodine - Vitamin B12
g. Cobalt - Dental caries
V. Give short answers for the followings
a. What is osteomalacia?
b. What are the hormones connected with the maintenance of
blood calcicum level?
194
c. Explain the functions of magnesium.
d. What is the form of calcium in bone?
e. What is the requirement of iron and phosphorus in growing
children?
a. What are the biological functions of phosphorus?
b. Explain the factors affecting calcium absorption in the intestine.
c. Explain the functions of any four micro elements.
d. What is the importance of iron in the body?
e. How are sodium and chlorine important to the body functions?
195
CHAPTER 10
BIOCHEMICAL TECHNIQUES
10.1 Introduction
The major techniques applied for the qualitative and quantitative
assessment of biomolecules are chromatography, centrifugation, electro
phoresis and spectrophotometry.
10.2 Chromatography
One of the tasks of biochemists is to identify, separate and purify
one or more biological components in a mixture of such compounds in
a biological sample. One of the most important convenient methods
for achieving such separation is the use of chromatographic techniques.
The term chromatorgraphy was originally applied by Micheal Tswett,
a Russian Botanist, in 1906 to a procedure where a mixture of different
coloured pigments (chlorophylls and xanthophylls) was separated from
each other.
The basis of all forms of chromatography is the partition or
distribution co-efficient which describes the way in which a compound
distributes itself between two immiscible phases. For a compound
distributing itself between equal volumes of two immiscible solvents A
and B (Fig. 10.1), the value of distribution co-efficient is a constant at
a given temperature and is given by the expression
concentration in solvent A
= Kd
concentration in solvent B
where, Kd = distribution co-efficient.
196
Basically all chromatographic systems consists of two phases. One
is the stationary phase which may be a solid, liquid or a solid liquid
mixture which is immobilized. The mobile phase may be a liquid or a
gas and flows over or through the stationary phase. Separation starts
to occur when a compound to be separated is held more firmly by the
stationary phase than the other which tends to move on faster in the
mobile phase. Thus, the underlying principle of chromatorgraphy is to
adsorb the components of the mixture on an insoluble material and then
to differentially remove or elute these components one by one with
suitable solvents.
STAGE 1 2 3 4 5
A 32 16 8 4 2
B 16 16 12 8
C 8 12 12
D 4 8
E 2
Fig. 10.1 Principle of d istribu tion coefficient
The term effective distribution co-efficient is defined as the total

amount as distinct from the concentration of substance present one
phase divided by the total amount present in the other phase. Thus, a
distribution co-efficient of a substance between alumina (stationary
phase) and butanol (mobile phase) might be 0.25 which means that the
197
concentration of the substance in butanol is four times that in the
alumina.The choice of stationary or mobile phases is made so that the
compounds to be separated have different distribution co-efficient.
In practice separations may be achieved by using different types
of chromatographic techniques
10.2.1 Types of chromatography
(a) Column chromatography: In this type, the stationary phase is
packed into a glass or metal columns (wide tubes or cylinders). The
mixture to be separated is layered on the
top of the column in the form of a solution
at particular concentration. After
equilibration the components are eluted Solvent
reservoir
out of the column one by one using specific flask
mobile phases (Fig.10.2).The solvent used

to elute the separated components is
known as eluant.
(b) Thin layer chromatography: In this
type, the stationary phase is thinly coated
on to a glass, plastic or foil plates. The
mixture to be separated is applied on the
stationary phase at one end and kept
vertical in the petridish containing the
mobile phase. When the mobile phase
reaches the other end of the plate the
plate is removed from the petridish and
the compounds separated are identified
by using specific staining reagents. Fig. 10.2 Apparatus for
column chromatography
(c) Paper chromatography: In this type the stationary phase is

supported by the cellulose fibres of a paper sheet. The mobile phase
flows through the stationary phase and effects separation.
198
Each of these three types of chromatography have their specific
advantages, applications and method of operation.
10.2.1.1 Column chromatography: All the major types of
chromatography are routinely carried out using column type (Fig.
10.3). The different types of column
chromatography are
i. adsorption chromatography
ii. partition chromatography Slurry
iii. ion-exchange chromatography

iv. exclusion chromatography
Glass rod
v. affinity chromatography
i. Adsorption chromatography
Principle:
An adsorbent may be described as a Dilute suspension
solid which has the property of in solvent
adsorbing molecules at its surface,
particularly when it is porous and finely
divided. Adsorption can be specific so
that one solute may be adsorbed Packed column
selectively from a mixture. Separation of material
components by the method depends
upon differences both in their degree of Glass wool
adsorption by the adsorbent and Tap for elution

solubility in the solvent used for
separation.Adsorption chromatography
can be carried out in both the column
and thin layer modes. Fig. 10.3 The preparation of a
ii. Partition chromatography chromatography column
Principle: This technique is based on the partitioning of compounds

between a liquid stationary phase and a liquid mobile phase. The liquid
199
stationary phase can be held on any solid support like paper. This
technique is otherwise known as liquid- liquid chromatography.
iii. Gas liquid chromatography
Principle: This technique is based upon the partitioning of compounds
between a liquid stationary phase and a gas mobile phase . It is a
widely used method for the qualitative and quantitative analysis of a
large number of compounds (eg. fatty acids) because it has high
sensitivity, reproducibility and speed of resolution. A stationary phase
of liquid material such as a silicone grease is supported on an inert
granular solid . This material is packed into a narrow coiled glass or
steel column 1 to 3 meter long and 2 to 4mm internal diameter. Through
this column an inert carrier gas (the mobile phase) such as nitrogen,
helium or argon is passed. The column is maintained in an oven at an
elevated temperature which volatilizes the compounds to be separated.
The basis for the separation is the difference in the partition
coefficients of the volatilized compounds between the liquid and gas
phases as the compounds are carried through the column by the carrier
gas. As the compounds flow, they leave the column and pass through a
detector which is connected to a recorder and record a peak. The
area of the peak corresponds to the concentration of the compound
separated.
iv. Ion exchange chromatography
Principle: The principle of this form of chromatography is the attraction
of oppositely charged particles . Many biological materials, such as
amino acids and proteins, have ionisable groups and the fact that may
carry a net positive or negative can be utilized in separating mixtures
of such compounds. The net charge carried by such compounds depend
on their pKa and on the p H of the solution.
Ion exchange separations are mainly carried out in columns packed
with an ion exchanger, which contain the core matrix molecule with
exchangeable ionic groups on its surface. There are two types of ion-
200
exchangers, namely cation and anion exchangers. Cation exchangers
posses negatively charged groups and they will attract positively charged
molecules. Anion exchangers have positively charged groups which
will attract negatively charged molecules. The actual ion exchange
mechanism composed of four steps;
a. selective adsorption of the molecules to be separated by the ion
exchange resins.
b release of the exchangeable group from the matrix.
c. Elution of the absorbed molecule by specific eluants.
d. Regeneration of the matrix by recharging with the original
exchangeable groups.
Cation exchanger
adsorbtion
RSO3----------- Na+ + X +, X, Y======> RSO3 -----X+ + Na+
(mixture of compounds)
(elution)
RSO3 -----X+ + H+ ======> RSO3------- H+ + X+
RSO3------- H+ + NaCl ======> RSO3------- Na+ + HCl
(regeneration)
Anion exchanger
R NH3 ---------- OH- + X -, X, Y======> RNH3 -----X- + OH-
(mixture of compounds)
RNH3 -----X- + Cl - ======> RNH3 -----Cl - + X - OH -
RNH3 -----Cl - + OH - ======> RNH3 -----OH - + Cl -
201
Some of the ion exchange materials used in this technique are
Amberlite IRC 50, Bio- Rex, Dowex 50, Sephadex etc.
v. Exclusion chromatography
This chromatography is otherwise known as gel permeation
chromatography.
Princple: This technique is based on the separation of molecules on
the basis of their molecular size and shape and the molecular sieve
properties of a variety of porous materials which serve as the solid
stationary phase.
A column of gel particles or porous glass granules is in equilibrium
with a suitable solvent for the molecules to be separated. Large
molecules which are completely excluded from the pores will pass
through the interstitial spaces and smaller molecules will be distributed
between the solvent inside and outside the molecular sieve and will
then pass through the column at a lower rate . So the larger particles
will come out of the column first followed by smaller particles (fig.
10.4).
M a trix
L a r g e (e x c lu d e d ) s o lu te
m o le c u le s
S m a ll s o lu te m o le c u le s
F ig . 1 0 .4 D ia g ra m m a tic
re p re s e n ta tio n o f s e p a ra tio n b y
e x c lu s iv e c h ro m a to g ra p h y
202
The gel materials generally used for this technique are cross-linked
dextrans, agarose, polyacrylamide, poly styrene etc.
vi. Affinity chromatography:
Principle: This technique is based on the specific biological
interaction of the compounds to be separated with the special molecules
attached on the stationary phase called as ligands. This technique
requires that the material to be isolated is capable of reversibly binding
to a specific ligand which is attached to an insoluble matrix (stationary
phase). M + L ML
m acro- ligand C om plex
m olecule (attached to
m atrix)
Under suitable experimental conditions when a complex mixture
containing the specific compound to be purified is added to the
insolubilised ligand generally contained in a chromatography column,
only that compound will bind to the ligand. All the other compounds
can be washed away and the compound subsequently recovered by
displacement from the ligand. The purification of an enzyme by this
technique is shown diagrammatically in Fig. 10.5.
ligand
Enzyme
Matrix Bound enzyme
Spacer Affinity
arm elution
(with )
Dialysis
Purified enzyme
Fig. 10.5 Diagrammatic representation of purification of an
enzyme by affinity chromatography
203
In practice , particles which are uniform , spherical and rigid are
used as matrix materials are polystyrene, cellulose, porous glass and
silica etc.
10.2.1.2 Thin Layer chromatography
Principle: Partition, adsorption, exclusion chromatography can be
carried out in a thin layer mode. In this technique the stationary phase is
made in the form of a slurry and applied as a thin coating on the surface
of a glass plate.After activating the plate ,the sample to be separated is
applied at one end of the plate . The plate is kept in a chamber specially
designed for this purpose( TLC chamber) and allowed the sample and
the mobile phase to raise through the stationary phase by capillary action.
The whole procedure consists of.
a. Thin layer preparation : A slurry of the stationary phase ,
generally applied to a glass, plastic or foil plate as a uniform thin layer
by means of a plate spreader starting from one end of the plate and
moving progressively to the other. Calcium phosphate is incorporated
into the slurry in order to facilitate the adhesion of the adsorbent to the
plate. The plate is heated in an oven at 100 0 C to activate the adsorbent.
b. Sample application: The sample is applied to the plate by means
of a micropipette or syringe as spots or as a band on the stationary
phase.
c. Plate development: Separation takes place in a glass tank which
contains developing solvent to a depth of about 1.5 cm. This is allowed
to stand for atleast an hour with a lid over the top of the tank to ensure
that the atmosphere within the tank becomes saturated with solvent
vapour.
d. Component detection: The components separated are detected
by (i) spraying the plate with 50% sulphuric acid or 25% sulphuric acid
in ethanol and heating; (ii) examining the plate under ultraviolet light; (iii)
spraying of plates with specific colour reagents, for example ninhydrin
for amino acids.
204
10.2.1.3 Paper chromatography
Principle: The cellulose fibres of chromatography paper act as the
supporting matrix for the stationary phase. The stationary phase may
be water, a non-polar material such as liquid paraffin or impregnated
particles of solid adsorbent. The components get separated between
the liquid stationary phase and the liquid mobile phase. The procedure
consists of
a. Paper development: There are two techniques which may be
employed for the development of paper, ascending and descending
methods. In both cases, the solvent is placed in the base of a sealed
tank or glass jar to allow the chamber to become saturated with the
solvent paper. The sample spots should be in a position just above the
surface of the solvent so that as the solvent moves vertically up the
paper by capillary action, separation of the sample is achieved.
b. Component detection: The separated components can be
detected by (i) examining the paper under ultraviolet light; (ii) spraying
of papers with specific colour reagents, for example ninhydrin for amino
acids and sulphuric acid for simple sugars.
The identification of a given compound may be made on the basis
of its Rf value (retardation factor) which is the distance moved by the
components during development divided by the distance moved by the
solvent from the point of origin (Fig. 10.5).
The distance moved by the solute from origin
Rf =
The distance moved by the solvent from origin
205
S o lv e n t f r o n t
S o lu te f r o n t x
Rf =
y
y
x
O r ig in
F ig . 1 0 .5 T h e m e t h o d o f d e te r m in a tio n o f R f
v a lu e in p a p e r c h r o m a to g r a p h y
The value of Rf is constant for a particular compound under

standard conditions and closely reflects the distribution co-efficient for
that compound.
10.2.2 Applications of chromatography
a. Thin layer chromatography is used for the separation of alkaloids,
phospholipids and other lipids.
b. Gas liquid chromatography is applied for the separation of fatty
acids in a lipid mixture.
c. Ion exchange chromatography can be used for the separation and
identification of amino acids in a mixture of protein hydrolysate.
This principle is used in auto-analyzer.
d. Exclusion chromatography can be applied for the determination of
the molecular weight of the components separated.
e. Affinity chromatography is applied for the purification of a wide
range of enzymes and other proteins like immunoglobulins.
10.3 Electrophoresis
10.3.1 General principle: Many important biological molecules such
as amino acids, peptides, proteins, nucleotides and nucleic acids posses
ionisable groups and can therefore be made to exists in solution as
electrically charged species either as cations (+) or anions (-). When
206
a mixture of these components subjected to electric field, they migrate
differentially and thus they can be separated.
10.3.2 Types of electrophoresis
(i) low voltage thin sheet electrophoresis; (ii) high voltage
electrophoresis, (iii) gel electrophoresis – native poly acrylamide gel
electrophoresis and sodium dodecyl sulphate (SDS) poly acrylamide
gel electrophoresis, (iv) isoelectric focussing and (v) isotachophoresis.
10.3.2.1 Gel electrophoresis
The most commonly used electrophoresis is gel electrophoresis.
In this technique either agarose or poly acrylamide is used as supporting
media. Electrophoresis units are available for running either vertical or
horizontal gel systems. Vertical slab gel units are commercially available
and routinely used to separate proteins in acrylamide gels. The gel is
formed between two glass plates that are clamped together but held
apart by plastic spacers. Gel dimensions are mostly 12 cm x 14 cm
with a thickness of 0.5 mm to 1.0 mm. A plastic comb is placed in the
gel solution and removed after polymersization to provide loading wells
for the samples. When the apparatus is assembled the lower
electrophoresis tank buffer surrounds the gel plates and effect cooling
of the gel plates.
In horizontal gel system, the gel is cast on a glass or a plastic sheet
and placed on a cooling plate. Connection between the gel and electrode
buffer is made by using a thick wetted filter paper (wick). The power
pack supplies direct current between the electrodes in the electrophoresis
unit. All electrophoresis is carried out in appropriate buffer to maintain
constant state of ionization of the components being separated. Any
variation in pH may alter the over all charge and so the mobility of the
molecules being separated (Fig. 10.6).
Agarose Gels: Agarose is a linear polysaccharide made up of
repeating units of agarobiose which contains galactose and 3, 6 anhydro
galactose. This is isolated from seaweeds. Agaroses gel is usually
prepared at the concentration of 1-3% solutions. The gels can be
207
prepared by suspending dry agarose in suitable aqueose buffer then
boiling the mixture until a clear solution forms. This is poured and
allowed to cool to room temperature to form a rigid gel. Agarose gels
are used for the electrophoresis of both proteins and nucleic acids.
Polyacrylamide Gels: Electrophoresis in acrylamide gels is referred
as PAGE being an abbreviation for PolyAcrylamide Gel
Electrophoresis. Polyacrylamide gels are prepared by dissolving
required quantity of acrylamide with a small amount of N, N’-methylene
bisacrylamide in suitable buffer. The polymerization is initiated by
ammonium persulphate and N, N, N’, N’-tetramethylene diamine
(TEMED).The polymerization is free radical mediated reaction. Sodium
dodecyl sulphate (SDS) polyacrylamide gel electrophoresis is the
most widely used method for analyzing protein mixture qualitatively. It
is particularly useful for monitoring protein purification. SDS is an
anionic detergent. Samples to be run on SDS-PAGE are first boiled
for 5 minutes in sample buffer containing beta mercapito ethanol and
SDS. The mercapto ethanol reduces any disulphide bridges and cleave
the protein into different sub-units. So, by this electrophoresis different
units of proteins can be identified.
S u p p o r tin g m e d iu m
C o ver
W ic k
E le c tr o d e +
ve
I n s u la tin g
E le c tr o d e - p la te
ve
C o m p a r tm e n ts o f b u ff e r r e s e r v o ir
Fig.10.6 An horizontal electrophoresis unit
208
Detection of separated components
a. Proteins can be detected by using the dye-solution Coomassie
Brilliant Blue R-250 (CBB). Staining is usually carried out using
0.1% CBB in methanol : acetic acid : water in the ratio 5:1:5. The
protein bands will look blue in colour.
b. Glycoproteins are detected by using periodic acid – schiff (PAS)
stain. The bands will appear in red colour.
c. Nucleic acids can be detected by using the fluorescent dye ethidium
bromide. The nucleic acids bands will appear colourless in black
background.
10.4 Centrifugation techniques
10.4.1 Principle
These techniques are based up on the behaviour of particles in an
applied centrifugal field such as density, shape or size of the molecules
being separated. The particles are normally suspended in a specific
liquid medium held in tubes or bottles which are located in rotor. The
rotor is positioned centrally on the drive shaft of the centrifuge. Particles
which differ in density, shape and size can be separated since they
sediment at different rates in the centrifugal field. Each particle sediments
at a rate which is proportional to the applied centrifugal field. The rate
of sedimentation can be expressed as rpm (revolutions per minute) or
as g (gravitational force).
Basic principle of sedimentation: The rate of sedimentation is
dependent up on the applied centrifugal field (G) which is determined
by the square of the angular velocity of the rotor (w) and the radial
distance (r) of the particle from the axis of rotation according to the
equation G= w2 r. The sedimentation rate or velocity (v) of a particle
can also be expressed in terms of its sedimentation per unit centrifugal
field, known as sedimentation co-efficient (s).
v = s w2 r.
209
10.4.2 Types of centrifugation techniques: Two main types of
centrifugation techniques are in general use.
a. Preparative centrifugation techniques: This technique is applied
for the actual separation, isolation and purification of whole cells,
plasma membrane, ribosomes, chromatin, nucleic acids,
lipoproteins, viruses and many sub-cellular organelles. Large
amount of materials may be involved for the bulk isolation.
b. Analytical centrifugation techniques: This technique is applied to
study the characteristic features of pure macromolecules or particles.
It requires only a small amounts of materials and utilizes specially
designed rotors and detector system to continuously monitor the
process of sedimentation of the material in the centrifugal field.
10.4.2 Centrifuges and their uses: The instrument used for this
technique is known as centrifuge.Four major types of centrifuges are
generally used. They are
a. small bench centrifuges
b. large capacity refrigerated centrifuges
c. high speed refrigerated centrifuges
d. ultracentrifuge (i) preparative (ii) analytical
a. Small bench centrifuges: These are the simplest and less
expensive instruments.They are used to isolate erythrocytes from
blood and other separations which require low centrifugal force.
These centrifuges generally have a maximum speed of 4000-6000
rpm (revolutions per minute).The speed can also be expressed as
g / min.
b. Large capacity refrigerated centrifuges: These centrifuges have
a maximum speed of 6000 rpm/ min . Compounds to be separated
can be taken in bulk.The instrment is provided with refrigeration
facility . By this method biological materials can be isolated without
any loss in their biological properties. Erythrocytes, coarse or bulky
210
precipitates, yeast cells, nuclei and chloroplasts can be isolated by
using this centrifuge.
c. High speed refrigerated centrifuges: These instruments have
maximum speed of 25000 rpm/min. They are used to collect
microorganisms, cellular debris, large cellular organells and
precipated proteins
d. Preparative ultracentrifuges: A maximum speed of 80000 rpm
/ min can be attained by this centrifuge. The rotor chamber is
refrigerated , sealed and evacuvated to minimize excessive rotor
temperature. These centrifuges are used for the separation of
lipoprotein fractions and for deproteinisation of physiological fluids
for aminoacid analysis
e. Analytical ultracentrifuges: These instruments are capable of
operating at about 70000rpm/min. The rotor is present inside an
evacuated , refrigerated chamber. An optical system is attached to
observe the materials getting sedimented and to determine
concentration distributions within the at any time during
centrifugation.This technique finds applications for the separation
and isolation of hormones, enzymes , ribosomal units, viruses and
subcellular organells from animal and plant tissue homogenates.
10.4.3 Differential centrifugation technique
It is a type of preparative centrifugation. This method is based on
the differences in the sedimentation rate of particles of different size
and density. In differential centrifugation, the material (a tissue
homogenate) to be separated in solution is centrifugally divided in to a
number of fractions by the step wise increase of applied centrifugal
field. The centrifugal field is determined by trial and error method so
that the particular type of material sediments during predetermined time
of centrifugation to sediment the particles in the form of pellet. The
supernatant contains other materials which are unsedimented. At the
end of each stage the pellet and supernatant are separated and the
211
pellet is purified by washing. Initially, all particles of the homogenate
are homogenously distributed through out the centrifuge tube. During
centrifugation particles move down the centrifuge tube at their respective
sedimentation rates and start to form pellet at the bottom of the tube.
Centrifugation can be continued till all the components are pelleted one
by one by increasing the centrifugal field.
For example, the sub-cellular organelles (nucleus, mitochondria,
lysosomes, microsomes) from a tissue liver homogenate can be isolated
by applying this differential centrifugation techniques. The technique
has the following steps:
a. Preparation of liver homogenate – 10% solution in 0.25 molar
sucrose.
b. Centrifugation at 1000 g for 10 minutes.
c. Isolation of the pellet sedimented which is nucleus.
d. The supernatant decanted from step (c) is subjected to centrifugation
at 3300 g for 10 minutes.
e. Isolation of the pellet sedimented which contains mitochondria.
f. The supernatant decanted from step (e) is subjected to centrifugation
g. Isolation of the pellet sedimented which contains lysosomes.
h. The supernatant decanted from step (g) is subjected to centrifugation
i. Isolation of the pellet sedimented which contains microsomes.
j. The supernatant obtained in the final step is the cell free cytosol.
The isolation of sub-cellular organelles is an essential procedure
used in many biochemical research laboratories by using this differential
centrifugation techniques. A schematic diagram of step-wise isolation
sub-cellular organelles from a liver homogenate is given in Fig. 10.7.
212
Liver
homogenate
Centrifuge
tube
Lysosomes
Nuclei
Mitochondria
Microsomes
1000 g 3300g 16300g 1,05,000g
Final
10 min. 10 min.
20 min. 60 min. Supern
cytosol atent
Nuclei Mitochondria Lysosomes Microsomes Cytosol
Fig. 10.7 Differential sedimentation of subcellular organelles

Applications of analytical ultra-centrifuge: The analytical ultra-
centrifuge has found many applications in fields of protein and nucleic
acid chemistry. This gives information about (a) determination of
molecular weight of biomolecules, (b) estimation of purity of
macromolecules and (c) detection of conformational changes in
macromolecules.
10.5 Spectrophotometry
The present aim of the clinical chemists is the development of micro
and ultramicro –methodology for the analysis of all the constituents of
blood and body fluids. The study of functions of the body in both
health and diseases critically requires the quantitative analysis of blood
and body fluids for their various constituents.
Because so much of the quantitative methodology of biological
chemistry is based on colour or light measurement, consideration must
be given to the physical properties involved and to the fundamentals of
the instrumental procedures. Many methods for the quantitative analysis
of blood , tissue, urine, and other biological material are used on the
separation of the substance in question and its chemical conversion to a
compound which is capable of absorbing radiant energy. If the reaction
213
product in solution absorbs light in the visible region of the spectrum
then the solution will be coloured. The intensity or depth of colour of
such a solution can be used as a measure of concentration of the
dissolved material. Determinations involving quantitative estimation of
colour are known as colorimetric analyses.
Many biochemical experiments involve the measurement of the
compound or group of compounds present in a complex. Probably,
the most widely used method for determining the concentration of
biochemical compounds is colorimetry which makes use of the property
that when white light passes through a coloured solution, some wave
lengths are absorbed more than others. Many compounds are not
themselves coloured, but can be made to absorb light in the visible
region by reaction with suitable reagents.These reactions are fairly
specific and in most cases very sensitive, so that quantities of materials
in millimolar quantities can be measured.
A knowledge of the physical nature of colour indicates that it is
produced when specific regions or wavelengths of the visible spectrum
are absorbed. To take a simple example , a solution has blue colour
because , it absorbs a lesser proportion of the blue components of the
mixed white light passing through it than any other coloured
components. Thus the white light entering the solution will emerge in
diminished intensity and have a preponderance of the blue wave lengths
so the solution appears to be blue. The proportion of the various wave
lengths of light absorbed is directly related to the concentration of light
absorbing material. The intensity of the remaining transmitted colour is
also a measure of the concentration of the material present in the
solution .
Analytical procedures based upon the direct measurement of
light absorption at specific wavelengths or regions of the spectrum
are known as photometric procedures and the instruments used are
photometers and spectrophotometers. In addition , there are methods
which are dependent on the ability of insoluble particles to scatter light,
called turbidimetric methods, which are dependent on the ability of
214
materials to emit light under specified conditions, called fluorimetric
methods.
10.5.1 Principle: Spectrophotometric technique is based on the
basic laws of light absorption. For uniform absorbing medium the
proportion of the light radiation passing through it is called the
transmittance, T, where T=I/I0. I0 = Intensity of the incident radiation,
I= Intensity of the transmitted radiation. The extent of radiation
absorption is more commonly referred to as the absorbance (A) or
extinction (E) which are equal to the logarithm of the reciprocal of the
transmittance,
i.e., A = E = log 1/T = logI0/I
Transmittance is generally expressed on a range of 0-100% and
used in certain type of turbidity measurement. Absorbance or extinction
varies from 0 to ∞.
10.5.1.1 The Beer –Lambert Law
When a monochromatic light of initial intensity Io passes through a
solution in a transparent vessel, some of the light is absorbed so that
the intensity of the transmitted light I is less than Io .There is some loss
of light intensity from scattering by particles in the solution and reflection
at the interfaces, but mainly from absorption by the solution. The
relationship between I and Io depends on the path length of the
absorbing medium, l, and the concentration of the absorbing solution,
c. These factors are related in the laws of Lambert and Beer (Fig 10.8).
Absorbing solution,
concentration c
Emergent beam
Monochromatic Incident beam,
light intensity Io intensity I
l
Depth of solution
Fig. 10.8 The absorption of light by a solution
215
Lambert’s law: When a ray of monochromatic light passes through
an absorbing medium its intensity decreases exponentially as the length
of the absorbing medium increases.
I = I0 e-k1l
Beer’s law : When a monochromatic light passes through an absorbing
medium its intensity decreases exponentially as the concentration of the
absorbing medium increases.
I = Io e - k2 c
These two laws are combined together in the Beer- Lambert law:
I = I0 e - k3 cl
Transmittance: The ratio of intensities is known as the transmittance
(T) and this is usually expressed as percentage
Percent T = I/I0 100 = e- k3cl
Extinction: If logarithms are taken of the equation instead of a ratio
then
log e Io/ I = k3cl
log10 Io/I= k3cl / 2.303
log10 Io/I= kcl
The expression log10 Io/I is known as the extinction (E) or
absorbance(A). The extinction is some times referred as optical density.
Therefore
A (or) E = k cl
where k is molar extinction co-efficient for the absorbing material at
wave length l, c = molar concentration of the absorbing solution,
l = path length in the absorbing material in cm. If the Beer- Lambert
law is obeyed correctly and l is kept constant, then a plot of extinction
against concentration gives a straight line passing through the origin
(Fig 10.7)
216
Extinction, E=log10 I0/I
100
1.0
% Transmittance, T=(1/Io)x 100)
E xtinctio n, E = lo g 10 I 0 /I
50
0.5
Concentration
Concentration
(a) Transmittance (b) Extinction
Fig 10.7: The relationship between the absorption of light and

concentration of an absorbing solution
Some colorimeters and spectrophotometers have two scales, a
linear one of percent transmission and a logarithmic one of extinction
(Fig 10.8). The extinction scale is related linearly to the concentration
and this scale is used in the construction of a standard curve. With the
aid of such a curve the concentration of an unknown solution can
easily be determined from its molar extinction.
Linear scale of % trans m ittance
100 80 60 40 20 0
0 0.1 0.2 0.3 0.4 0.6 0.8 1.0 8

∞
Log scale of extinction
Fig. 10.8 The relationship between per cent transmittance and

extinction
217
Molar extinction coefficient : If l is 1 cm and c is 1 mol/ litre then
the absorbance is equal to k, the molar extinction coefficient, which is
characteristics for a compound. The extinction coefficient k is thus the
extinction given by 1 mol / lit re in a light path of 1 cm and usually
written E1CM , it has the dimention of mol-1 cm-1. The instruments used
for the measurement of extinction by the molecules to be quantified are
spectrophotometer and photoelectric colorimeters.
10.5.2 The photoelectric colorimeter: A diagram of the basic
arrangement of a typical colorimeter is given in Fig 10.9.
Fig 10.9 A diagram of a photoelectric colorimeter

White light from a tungsten lamp passes through a slit, then a
condenser lense, to give a parallel beam which falls on the solution
under investigation contained in absorption cell or cuvette. The cell is
made of glass with the sides facing the beam cut parallel to each other.
In most of the colorimeters, the cells are 1 cm square and will hold 5
ml of solution .
Beyond the absorption cell is the filter , which is selected to allow
maximum transmission of the colour absorbed. If a blue solution is,
then red is absorbed and a red filter is selected . The colour of the filter
is, therefore, complementary to the colour of the solution under
investigation (Table 10.1). In some instruments the filter is located before
the absorption cell.
218
Table 10.1: The relationship between the colour of the
solution under investigation and the filter chosen for
colorimetric analysis.
Colour of solution Filter
Red-Orange Blue-Bluegreen
Blue Red
Green Red
Purple Green
Yellow Violet
The light then falls on to a photocell which generates an electrical

current in direct proportion to the intensity of light falling on it. This
small electrical signal is increased in strength by the amplifier , and the
amplified signal passes to a galvanometer, or digital readout, which is
calibrated with logarithmic scale and the extinction can be read directly.
The blank solution (which does not contain the material under
investigation) is first taken in the cuvette and reading adjusted to zero
extinction and this is followed by the test solution and the extinction is
recorded directly.
A better method is to split the light beam , pass one part through
the sample and the other through the blank, and balance the two circuits
to give zero. The extinction is determined from the potentiometer
reading which balances the circuit..
10.5.2.1 Photometric analysis: There are four general steps in
carrying out a photometric analysis:
a. separation of the substance from the complex mixture- for e.g.,
estimation of blood glucose requires the precipitation of lipids and
proteins by deproteinising agents which otherwise interfere with
the colour reaction of glucose
219
b. quantitative conversion to a coloured or light absorbing substance-
for e.g., after deproteinisation as mentioned above for glucose
estimation, the supernatant is made to react with orthotoluidine
reagent to give a greenish blue coloured complex
c. measurement of light absorption- for e.g., the colour intensity of
the above mentioned complex is measured by using a red filter.
d. calculation of the concentration of the substance - for e.g., by
comparing the extinction with that of the standard solution of the
same substance of known concentration.
Concentration absorbance of unknown

= x Concentration of known
of unknown absorbance of known
(standard)
10.5.2.2 UV Absorption Spectrophotometry

A spectrophotometer is a sophisticated type of colorimeter where
monochromatic light is provided by a grating or prism in the place of
filter in ordinary colorimeter. The band width of the light passed by a
filter is quit broad , so that it may be difficult to distinguish between two
compounds of closely related absorption with a colorimeter. Some
compounds absorb strongly in the ultra violet region and their
concentration can be determined as with a colorimeter by using a more
expensive type of spectrophotometer which operates down to 190
nm. For e.g.,
(i) The activity of enzymes requiring NAD as coenzymes can be
determined by treating the enzyme source with the relevant substrate
and measuring the NADH formed (colourless) which gives strong
absorption at 340 nm. The increase in absorbance is proportional
to the concentration of the enzyme.
(ii) the concentration of uric acid can be estimated by measuring the
extinction of the solution at 293 nm before and after treatment with
220
an excess of the enzyme uricase. At pH 9.0, uric acid which absorbs
at 293 nm, is oxidized by uricase to allantoin, which has no
absorption at this wave length. The decrease in absorbance at 293
nm is a measure of uric acid level.
The main components of a simple spectrophotometer are shown
in Fig 10.10.
slit slit
Monochromator Sample Photo-cell Amplifier Direct read out

Light
or recorder
source
Fig. 10.10 The main components of a
simple spectrophotometer
10.5.2.3 Absorption spectra

Many compounds have characteristic absorption spectra in the
ultra violet and visible regions so that identification of those materials in
a mixture is possible.
Proteins: Proteins absorb strongly at 280 nm according to their content
of the amino acids tyrosine and tryptophan, and this provides a sensitive
and non-destructive form of assay.
Nucleic acids: Nucleic acids and their component bases show
maximum absorption in the region of 260nm. The extent of absorption
of nucleic acid is a measure of their integrity, since the partial degraded
acids absorb more strongly than the native materials.
Haem proteins: These conjugated proteins absorb in the visible region
as well as in the UV region of the spectrum due to haem group. The
visible spectra of the oxidized and reduced forms of cytochrome C are
sufficiently different so that the relative amounts of these forms can be
determined in a mixture.
Things to remember: The detailed operation of a particular instrument
must be obtained by carefully reading the instruction manual. Few
221
important points concerning the use and care of calorimeters and
spectrophotometers are given below.
a. Cleaning the cuvette:The cuvette should be cleaned by soaking in
50 per cent v/v nitric acid and then thoroughly rinsed in distilled
water.
b. Using the cuvette: First of all, fill the cuvette with distilled water
and check them against each other to correct for any small difference
in optical properties. Always wipe the outside of the cuvette with
soft tissue paper before placing in the cell holder. When all the
measurement have been taken, wash them with distilled water and
leave in the inverted position to dry.
c. Absorption of radiation by cuvettes: All cuvettes absorb radiation
and the wave length at which significant absorption occurs depend
on the material from which the cuvette is made. Silica cuvettes are
the most transparent to U/V light but they are expensive. Glass
cuvettes are much cheaper than silica, and so they are used
whenever possible and invariably in the visible region of the
spectrum.
d. Light source : A tungsten lamp produces a broad range of radient
energy down to about 360 nm. To obtain the ultra violet region of
the spectrum a deuterium lamp is used as the light source.
e. Blanks: The extinction of a solution is read against a reagent blank
which contains all the reagents except the compound to be
measured. The blank is first placed in the instrument and the scale
adjusted to zero extinction before reading any solution .
Alternatively, the extinction can be read against distilled water and
the blank reading can be subtracted from that of the test solution
f. Duplicates: It is essential to prepare all blanks , standard solutions
and unknown solutions in duplicates so that the accurate standard
curve can be obtained.
222
g. Construction of standard curve : A series
of concentrations of standard solution are
taken in different test tubes and made to react
absorbance
with colouring agents. The blank tube is also
treated similarly but by replacing standard
solution with water. The absorbance are
measured at the corresponding wavelength Concentration of standard
and a graph is plotted concentration of the

standard versus the absorbance. Fig. 10.11 Standard
calibration curve
10.5.3 Applications of spectrophotometry
Colorimetry and spectrophotometry have widest application in
biological sciences. These techniques are used for the determination of
a. glucose, proteins, lipids, nucleic acid etc
b. turbidity of solutions( bacterial cell mass)
c. absorption spectrum of a compound
d. purity of compound by knowing the molar extinction coefficient
which is maximum for a pure compound.
Excercise
1. Choose the correct answer from the given four alternatives

a. Chromatography is based on the principle of
i. Conductivity ii. Distribution coefficient
iii. Counter balance of charges iv. Centrifugal force.
b. Agarose is a polymer of
i. Galactose ii. Agarobiose iii. Polyacrylamide
iv. Bisacrylamide
223
c. In analytical ultracentrifuges the maximum speed is
i. 70,000 rpm ii. 7000 rpm iii. 45000 rpm iv. 1000 rpm
d. Monochromators are seen in
i. Centrifuges ii. Potentiometers iii. Spectrophotometers
iv. Densitometers.
e. Amino acids can be identified by using the staining agent
i. Ninhydrin ii. Sulphuric acid iii. Ethydium bromide
iv. Coomasie brilliant blue
a. The subcellular organelles of a cell suspension can be isolated
by __________________ technique
b. Polyacrylamide gel is prepared by mixing acrylamide and
______________ at fixed proportions.
c. In exclusion chromatography ___________ sized particles are
eluted first.
d. According to Beer’s law the intensity of the emerging light
from a solution depends on _____________ of the absorbing
medium.
e. The molecular weight of porteins can be determined by
____________ chromatographic technique.
a. In UV spectrophotometer, the lamp used for UV absorption
measurement is tungsten lamp.
b. Transmittance is inversely proportional to extinction.
c. Monochromators have better resolution capacity of differnt
light wavelengths than filters.
d. Nucleic acids and their component bases show maximum
absorption at 260 nm.
e. In paper chromatography, the stationary phase is a liquid.
224
1. Affinity chromatography - Fatty acid analysis
2. Gas-liquid chromatography - Ligand
3. Spectro photometer - Separation of proteins
4. Differential centrifugation - Beer-Lamberts law
5. PAGE - Isolation of subcellular
organelles
(a) What are the two phases involved in chromatographic
technique?
(b) Mention any two materials used to prepare the slurry in TLC.
(c) What is agarose?
(d) Which type of ultra centrifuge is applied for the determination
of molecular weight of compounds?
(e) How is transmittance and extinction are related?
VI. Answer the followings:
a. Explain the principle of affinity chromatographic technique.
b. How will you isolate subcellular organelles present in a liver
homogenate?
c. What are the factors affecting electrophoresis?
d. Calculate the concentration of glucose present in 100 ml of the
unknown solution by using the following data
225
Extinction Concentration of standard in a total
read volume of 4.0 ml (in microgram)
0.02 20
0.04 40
0.06 60
0.08 80
0.10 100
0.05 x (unknown)
in a total volume of 4.0 ml
The volume of unknown used for the measurement of extinction is 0.5ml.

(e) Give the diagrammatic representation of photoelectric
colorimeter and explain the principle.
226
PRACTICALS
Introduction
Biochemical analyses are of two types. (a) Qualitative analyses
are done to identify and detect the presence of certain substances in a
mixture of such compounds. (b) Quantitative analyses are performed
to find out the exact amount of a particular substance in a pure solution
or in a mixture. In biochemical laboratories both these analyses are
performed to detect and to quantify some important metabolites in blood
and body fluids.
Generally the qualitative tests can be conducted in transparent
glass test tubes to observe the colour formation easily. The glass wares
requried to conduct quantitative estimations are conical flask, standard
flask, volumetric pipette and burette.
Qualitative tests for carbohydrates
Basically the qualitative tests used for carbohydrates can be
catogorised in to the following groups:
(a) common tests for carbohydrates
(a) tests for reducing property of carbohydrate;
(b) tests for the functional groups (aldehyde/ketone);
(c) test for monosaccharide/disaccharide; and
(d) test for pentose.
It is suggested that 1 % solution of each of glucose, fructose,
galactose, arabinose, ribose, lactose, sucrose, maltose and starch can
be prepared and subjected to each test in a systematic manner.
227
Common tests for carbohydrates
1. Molisch’ s test:
Principle- Sugars undergo dehydration in the presence of non- oxidizing
acids like hydrochloric acid and sulphuric acid to form furfural or
hydroxy methyl furfural. These compounds can react with aromatic
amines such as α naphthol or phenol to give intensely coloured
compounds. This reaction forms the basis of a general qualitative test
for sugar.
Reagents- (1) 5% α naphthol in ethanol (2) Conc. Suphuric acid.
Test - Add 2.0 ml of the given solution in a test tube and add 2 drops
of an ethanolic solution of naphthol. Carefully run down about 1.0 ml
of Conc. sulphuric acid along the sides of the tube. Formation of a
bluish violet coloured ring at the junction of two liquids or development
of violet colour throughout the solution shows the presence of
carbohydrate.
Anthrone test:
Principle- Carbohydrates form furfural with Conc. sulphuric acid and
produce bluish green colour followed by the addition of anthrone.
Reagents- (1) 0.2% anthrone in Conc. sulphuric acid.
Test - Take 2.0 ml of the reagent in a test tube and add two drops of
the test solution . Mix well . I f there is no colour change , boil in a water
bath for 10 min. Formation of green colour indicates the presence of
carbohydrates.
Tests for reducing property of carbohydrate
Fehling’s Test
Principle- If the carbohydrate has reducing group, the cupric ions
present in the Fehling’s reagent will be reduced to cuprous ions and
even copper and this will produce a rusty brown or red precipitate.
228
Reagent - Fehling solution is prepared by dissolving 7.0 gm of copper
sulphate in water and making up to 100 ml. In a separate container
24.0 gm of potassium hydroxide and 34.6 gm of sodium potassium
tartarate are dissolved and made up to 100 ml in water. Just prior to
use, the two solutions are mixed.
Test - To 2 ml of this solution add a few drops of the given test
solution and boil. Formation of red or brown precipitate shows the
presence of reducing sugar .
Benedict’s Test
Principle
When the reducing sugar is boiled with Benedict’s reagent which is
an alkaline solution of cupric sulphate, the blue coloured cupric sulphate
is reduced gradually to form insoluble cuprous oxide which may be
green ,yellow, orange or red in colour, depending upon the concentration
of sugar in the solution.
Reagent – Benedict qualitative reagent: 17.3 gm of sodium citrate
and 10.0 gm of sodium carbonate are dissolved in about 75 ml of
water and filtered if necessary. Separately 1.73 gm copper sulphate is
dissolved in about 20 ml water and this is slowly added to alkaline
citrate solution with stirring. The volume is made up to 100 ml.
Test - Add 3 to 4 drops of the given test solution to 2 ml of the
reagent and boil the contents. Formation of red precipitate shows the
presence of reducing sugar.
Test for monosaccharide
(a) Barfoed’s test: Principle- This test is used to distinguish
monosaccharides from disaccharides as the monosaccharides
immediately give cuprous oxide red precipitate on heating (for 1-2 min)
with Barfoed’s reagent which contains cupric acetate in acetic acid
Reagent – The reagent is prepared by dissolving 13.3 gm of copper
acetate in 200 ml of water and adding 1.8 ml of glacial acetic acid.
229
Test - Add 1.0 ml of given test solution to 2.0 ml of the reagent and
boil exactly for 1 minute. Formation of reddish orange precipitate shows
the presence of monosaccharides. Excess boiling will give faults positive
results., i.e., disaccharides also give red colour on excess boiling.
Test for ketonic group
Seliwanoff test: Principle- Keto hexoses like fructose form hydroxy
methyl furfural derivatives with hydrochloric acid and form cherry red
coloured compound with resorcinol present in the Seliwanoff ‘s reagent
Reagent- Seliwanoff’s reagent – This reagent is prepared by dissolving
50 mg of resorcinol in 100 ml of dilute HCl.
Test – Add a few drops of the given test solution to 5.0 ml of this pre-
heated reagent and boil the mixture. Formation of cherry red colour in
three minutes shows the presence of ketose sugar.
Test for pentose
Bial’s test: Principle- Pentose sugar forms furfural derivatives with
hydrochloric acid and then reacts with orcinol to give green coloured
products.
Reagent: Bial’s reagent is prepared by dissolving 150 mg of orcinol
in 50.0 ml of concentrated HCl.
Test : Mix 5.0 ml of this reagent and 2.0 ml of the given test solution
in a tube and heat in a water bath. Note the time at which any colour
change is observed. Formation of green colour within 10 minutes
shows the presence of a pentose.
Tests for galactose
(1) Tollens phloroglucinol test: Add 1 ml of the test solution to
0.5ml of phloroglucinol solution. Formation of red colour indicates the
present of galactose.
(2) Mucic acid test : Add 1 ml of the test solutoin to 0.5 ml of dilute
nitric acid and heat in a boiling water bath for 90 mins. and let stand for
230
over night. Formation of crystalline white precipitate shows the presence
of galactose.
Test for polysaccharides
Iodine test: Principle- Iodine forms blue coloured complex with
1,4 glycosidic linkages present in polysaccharides such as starch and
glycogen.
Reagent - The reagent is prepared by dissolving 3 gm of iodine in
100 ml of 3 % potassium iodide.
Test – Add a few drops of the given test solution to 2 drops of 0.1N
HCl followed by 2 drops of iodine reagent. Formation of blue colour
shows the presence of starch and brown colour shows the presence of
glycogen.
If the given carbohydrate solution is found to be a non-reducing
one, the carbohydrate must be hydrolyzed to give reducing
monosaccharide units and then all the tests should be performed to
identify the components after hydrolysis.
Hydrolysis of non-reducing sugars
2.5 ml of the given solution is mixed with 5 drops of concentrated
sulpuric acid and boil the contents for 5 minutes. Cool the contents
and neutralize with saturated barium hydroxide. Remove the precipitate
of barium sulphate by filtration and carry out all the tests in the filtrate.
Confirmatory test for carbohydrates
Phenyl hydrazine test: Principle- This is an important reaction of
reducing sugars(monosaccharides and disaccharides). The aldehyde
or ketonic groups present in sugar reacts with phenyl hydrazine and
forms yellow crystalline products called osazones. The shape and the
time of formation of osazone confirms the type of carbohydrate.
231
Reagent – The reagent is prepared by mixing 2 parts of phenyl hydrazine
hydrocloride and 3 parts of sodium acetate by weight. These are
thoroughly mixed in a mortar.
Test – To 2.0 ml of the given solution add about 1 spatula of the
reagent mixture and boil the contents in a water bath. Note down the
time taken for the formation of yellow coloured crystals. Allow the
tube to cool slowly and examine the crystals microscopically. Better
crystals can be obtained if the tubes are allowed to cool in a water
bath.
Table 1: Time of formation and the shape of osazone
Carbohydrate Time of formation Shape of osazone crystals

of osazone
Mannose 1-5 mins Rapidly form an insoluble white

mannosazone hydrazone even before
heating. On heating form white broken
glass like osazone particles.
Fructose 2-3 mins Yellow needle shaped crystals
Glucose 5-7 mins Yellow needle shaped crystals
Galactose 15-20 mins Broken glass like crystals
Lactose 45-50 mins Badminton ball shaped crystals, soluble
in hot water.
Maltose 35-45 mins Star shaped crystals
Arabinose 8-10 mins Chalk powder shaped crystals
Xylose 6-7 mins Flower shaped crystals
Sucrose 3-7 mins Needle shaped crystals form after
hydrolysis
232
Quantitative test for carbohydrates (glucose)
Aim
To estimate the amount of glucose present in the given test solution
by Benedict’s quantitative method.
Benedict’s method
This method is of value in clinic analysis of glucose in blood and
urine.
Principle
The cupric ions present in the Benedict quantitative reagent is
reduced by the aldehyde group of glucose and form colourless white
precipitate on heating.At a fixed volume of Benedicts reagent, the volume
of glucose solution consumed is proportional to the concentration of
glucose present in it . The end point is the complete disappearence of
blue colour
Reagents
(a) Benedict quantitative solution: Dissolve 200 gm of sodium
citrate, 75 gm of anhydrous sodium carbonate and 125 gm of potassium
thiocyanate in about 600 ml of water with gentle heating. Filter, cool
and add 18 gm of copper sulphate dissolved in about 100 ml of water.
Mix both the solutions with stirring continuously. Add 5.0 ml of 5%
potassium ferrocyanide solution and make up to a litre with distilled
water. If the solution is not clear, filter.
(b) Sodium carbonate (anhydrous)
(c) Standard glucose solution: 200 mg of glucose is accurately
weighed and dissolved in a 100 ml conical flask with about 20 ml of
water. When the substance is completely dissolved, the volume is made
up to the mark with water. Concentration of glucose in the standard
solution is 2.0 mg /ml
233
Method
Step 1: Prepare the standard glucose standard glucose solution in

100 ml conical flask as described earlier.
Step 2: Take unknown glucose solution (test) in a standard flask and

add distilled water to make up to the mark.
Step 3: Measure accurately 10 ml of the Benedict quantitative reagent

in to a 100 ml conical flask and approximately add 1 gm of sodium
carbonate. Heat the mixture to boiling. Take the standard sugar solution
in a burette and slowly run this solution in to the boiling reagent. A
bulky white precipitate formed first, which is cuprous thiocyanide. At
this stage, add the sugar solution slowly till the last trace of blue colour
has disappeared. Note the volume of the sugar solution required.
Repeat the titration till concordant values are obtained.
Step 4: Now, remove the standard sugar solution from the burette.
Wash the burette with distilled water and rinse with the given sugar
solution (test solution). Conduct the titration as mentioned in Step 3
and repeat the titration with Benedict quantitative reagent till concordant
values are obtained.
Step 5: The amount of sugar present in the unknown solution can be

calculated by knowing the titre value of both standard and test.
234
Titration 1 :Titration of standard sugar solution against
Benedicts quantitative reagent
Table-1
Volume of Benedict’s Burette Volume of sugar

Reagent (ml) reading (ml) solution consumed (ml)
Initial Final
10 .0 0 8.5
X1 (8.5)
10.0 8.5 17.0
Titration 2: Titration of unknown sugar solution against

Benedict’s reagent
Table- 2
Volume of Benedict’s Burette Volume of sugar

Reagent (ml) reading (ml) solution consumed (ml)
Initial Final
10 .0 0 10.0
X2 (10.0)
10.0 10.0 20.0
235
Calculation
♦ For model calculation the titre values are taken as mentioned in
the table.
♦ The volume of glucose solution( standard) consumed to reduce
10 ml of Benidict’s reagent = 8.5 ml( titration 1)
♦ The concentration of glucose in the standard solution = 2mg/ml,
therefore, the amount of glucose present in 8.5 ml of standard
glucose solution= 8.5 x 2 =17.0 mg of glucose
♦ Therefore 17.0 mg of glucose is required for the complete reduction
of 10.0 ml of Benedict’s reagent.
♦ The volume of unknown glucose solution consumed to reduce
10.0 ml of Benedict’s reagent=10.0 ml
♦ Therefore, 8.5 ml of standard glucose solution is equivalent to 10
ml of unknown glucose solution.
♦ Therefore 10.0 ml of unknown sugar solution must have contained
17.0 mg of glucose.
♦ Therefore 100 ml of the given test sugar solution must have
contained 10 x 17=170 mg of glucose.
Result: The amount of glucose present in the whole of the given
solution = 170 mg.
Qualitative tests for amino acids
There are a number of qualitative tests to detect the presence of
amino acids and these tests are dependant on the nature of the R groups
present in the amino acids and hence specific. The following tests can
be carried out with a number of amino acids for which 2 % solutions
can be prepared.
236
(1) Common test for amino acids
Ninhydrin test: Principle- When a solution of aminoacid is boiled
with ninhydrin, it is deaminated to hydrindantin and further reacts with
excess of ninhydrin and forms a blue coloured compound.
Reagent – Dissolve 200 mg of ninhydrin in 100 ml of ethanol.
Test – Add 1.0 ml of the given solution to 2.0 ml of ninhydrin reagent
and keep it in a boiling water bath for 10 minutes. Formation of a bluish
violet colour shows the presence of amino acids. Hydroxy proline and
proline give orange colour.
(2) Tests for tyrosine The tests for tyrosine are based on the presence
of phenolic hydroxyl group present in the amino acid.
a. Xanthoproteic test
Principle – The phenolic hydroxyl group of tyrosine reacts with strong
acids such as hydrochloric acid and sulphuric acid and produce reddish
orange colour with the addition of sodium hydroxide
Reagents – (i) concentrated nitric acid or conc.H2SO4 (ii) sodium
hydroxide
Test – Add a few drops of concentrated nitric acid to 1.0 ml of the
given amino acid solution. Subsequently, add a few drops of dilute
sodium hydroxide. Formation of orange colour shows the presence of
tyrosine.
b. Millon’s test
Reagents – (i) 15 % solution of mercuric sulphate in 15 % sulpuric
acid, (ii) 1 % sodium nitrite solution.
Test - Add a few drops of mercuric sulphate reagent to about 1.0 ml
of the given test solution and heat for 10 minutes at 100°C. After
cooling add a few drops of sodium nitrite solution. Formation of red
colour indicates the presence of tyrosine.
237
c. Morner’s test
Reagent- Morner’s reagent- This reagent is a mixture of 1.0 ml of
formaline, 45 ml of distilled water and 55 ml of concentrated sulphuric
acid .
Test: Add about 3.0 ml of Morner’s reagent to about 0.5 ml of the
test solution and gently boil the contents. Formation of green colour
indicates the presence of tyrosine.
(3) Tests for tryptophan - The tests are mainly based on the
imidazole group of tryptophan.
Hopkins Cole test:
Reagent s – (i) glyoxylic acid (ii) concentrated sulphuric acid.
Test – Add 2.0 ml of the given test solution to 2.0 ml of glyoxylic acid.
Mix well and then carefully add 2.0 ml of concentrated sulphuric acid
through the sides of the tube. Formation of violet ring at the junction
indicates the presence of tryptophan.
Ehrlich’s test: This test is based on the reaction between aromatic
aldehyde and the imidazole group of tryptophan.
Reagent – 10% para dimethyl amino benzaldehyde in 10 % HCl
(Ehrlich reagent).
Test - Add 1.0 ml of the given test solution to 1.0 ml of the Ehrlich
reagent. Formation of red colour shows the presence of tryptophan.
(4) Test for arginine
Sakaguchi test: This reaction is specific for guanidine group of arginine
Reagents-(1) 40% NaOH.(2) 1 percent α naphthol in alcohol. (3 )
Dilute bromine water
Test - Mix 3.0 ml of the test solution with 1.0 ml of 40 % NaOH.
Add two drops of α naphthol solution to the mixture. Add few drops
of bromine water slowly . Formation of red colour indicates the presence
of arginine.
238
(5) Test for sulphur containing amino acids
Test for cysteine:
a. Sullivan’s test: This test is based on the sulfhydryl group present
in the amino acid cysteine.
Reagents: 1.Sodium sulphite reagent – 15 % solution in 0.5N sodium
hydroxide; 2. Sodium bisulphite reagent – 2 % solution in 0.5N sodium
hydroxide; 3. 5N sodium hydroxide; 4. Sodium cyanide solution –
1% solution in 0.8N sodium hydroxide.
Test: To 5 ml of the test solution, add 1 ml of sodium cyanide reagent
followed by 5 ml of sodium sulphite reagent. Mix the content and let
stand for 30 minutes. A reddish brown colour appears. Then add 1 ml
of sodium bisulphite reagent. The reddish brown colour will be
converted to dark red colour. This shows the presence of cysteine.
b. Lead sulphide test
Reagents: 1. Lead acetate – 10% aqueous solution, 2. 40 %
Na OH or KOH.
Test: Add a few drops of lead acetate solution to 1 ml of the test
solution. Then add 2 ml of NaOH or KOH . Boil for a few minutes.
The solution becomes brown and a black precipitate of lead sulphide
appears. This shows the presence of cysteine.
c. Sodium nitroprusside test:
Reagent: 1 % solution of sodium nitroprusside, 2. 5% sodium
hydroxide.
Test: Add 1 ml of the test solution with 1 ml of sodium nitroprusside
reagent followed by 2 drops of NaOH. Formation of a deep purple
colour which fades after a few minutes indicates the presence of cysteine.
d. Ferric chloride test:
Reagents: 1% solution of ferric chloride, 2. 1% solution of copper
sulphate.
239
Test: Add 1 ml of test solution to 0.5 ml of ferric chloride reagent.
An indigo blue colour appears and disappears almost immediately. Then
add 0.5 ml of copper sulphate solution. Appearance of a transitory
violet colour indicates the presence of cystine.
e. Test for cystine
Reagents:
Test: To 5 ml of the test solution add 1 ml of freshly prepared 5%
aqueous solution of sodium cyanide. Mix and let it stand for 10 minutes.
Then add 1 ml of a freshly prepared 0.5% solution of 1, 2-
naphthoquinone – 4 sodium sulpfonate and sodium sulphite.
Appearance of a deep red colour in the solution indicates the presence
of cysteine.
f. Test for methionine
g. Sodium nitroprusside test: Reagents: (1) NaOH- 5% aqueous
solution (2) Glycine- 1.5% aqueous solution (3) Sodium nitroprusside
–10 % aqueous solution( to be prepared freshly) 4. Hydrochloric acid-
6N
T est: To 5.0 ml of the test solution add the following reagents in
order, mixing after each addition: 1.5 ml of 5N sodium hydroxide , 1.5
ml of glycine, 0.3 ml of sodium nitroprusside. Place the tubes in the
water bath at 37- 45 °C for 15 min , and add 3.0 ml of hydrochloric
acid. Shake for 1 min . Formation of a reddish purple colour indicates
the presence of methionine.
Quantitative estimation of glycine
The quantity of glycine can be estimated by the Sorenson’s formal
titration method
Aim: To estimate the amount of glycine present in the whole of the
given test solution
240
Principle: When glycine is treated with formaldehyde , the amino
group of glycine reacts with the aldehyde and forms dimethylol
compound. Now the carboxyl group is left free and can be titrated
with sodium hydroxide and the volume of sodium hydroxide consumed
is proportional to the amount of glycine in the given test solution. If the
amino group of glycine is not protected with formaldehyde, it will interfere
with the end point of the titration with sodium hydroxide.
Reagents:
1. standard oxalic acid solution: 630 mg of oxalic acid is accurately
weighed and dissolved with 20 ml of distilled water in a 100 ml standard
flask. When the substance is completely dissolved , the volume is made
up to the mark. The normality of this solution is 0.1N.
3. Sodium hydroxide 0.1N
4. Formaldehyde- Commercial
5. Phenolphthalein – 0.1 % solution as indicator
Method
Step : 1 The test solution of glycine in the standard flask is
made up to the mark accurately
Step : 2 Standardisation of sodium hydroxide
Fill the burette with sodium hydroxide after proper rinsing with
the same. Pipette out 10.0 ml of standard oxalic acid ( 0.1N) in a clean
conical flask . Add a drop of of indicator solution . Titrate the oxalic
acid solution against sodium hydroxide. Observe the sharp end point
which is the appearance of permanent pale pink colour .Note down
the volume of sodium hydroxide run down from the burette . Repeat
the titration for concordant values.
241
Step 3 : Titration of standardised used NaOH against glycine
(test) solution
Fill the burette with standardised sodium hydroxide. Take 10 ml
of the test glycine solution in a clean conical flask and mix well with 10
ml of formaldehyde. The contents are shaken well for the reaction to
take place . Now add a drop of of indicator. Titrate the mixture against
sodium hydroxide in the burette. Note down the volume of sodium
hydroxide run down from the burette at the end point of appearance of
pale pink colour. Repeat the titration for concordant values. Find out
the blank value by titrating 10 ml of water+ 10 ml of formaldehyde
against sodium hydroxide.The difference between the “test” and the
“blank” titre values is the volume of alkali consumed for the neutralization
of glycine present in the test solution
The normality of “test” glycine solution can be calculated by
knowing the normality of sodium hydroxide. From this the amount of
glycine present in the test solution can be determined.
Titration :1
Standard oxalic acid against sodium hydroxide
Sl. No. Volume of Burette Volume of Sodium Indicator

Oxalic acid reading (ml) Hydroxide (V2ml)
(V1ml)
Initial Final
1 10 0 10.2 X1 (10.2) Phenolp-

hthalein
2 10 10.2 20.4
242
Normality of oxalic acid N1 = 0.1N
Volume of oxalic acid used for titration = V1 = 10ml
Normality of sodium hydroxide N2 = X
Volume of sodium hydroxide consumed for titration = V2 = 10.2ml (for
model calculation if the volume of sodium hydroxide consumed is taken
as 10.2ml). According to the normality equation.
V1 x N1 = V2 x N2
10 x 0.1N = 10.2 x X
Therefore, N2 = V1x N1 / V2
= 10 x 0.1 N / 10.2
N 2 = 0.098
The normality of sodium hydroxide used for the titration is found to be
0.098 N.
Titration :2
Standard sodium hydroxide (0.098 N) against glycine (Test)

NaoH reading (ml) Hydroxide (ml)
(ml)
Initial Final
1 10 0 12.0 Phenolp-
X2 (12.0) hthalein
2 10 12.0 24.0
243
Titration :3
Standard sodium hydroxide against blank solution (water +
formaldehyde)

NaOH reading (ml) Hydroxide (ml)
(ml)
Initial Final
1 10 0 1.3 Phenolp-
X3 (1.3) hthalein
2 10 1.3 2.6
Calculation
Volume of sodium hydroxide solution consumed for the neutralisation
of “test” glycine solution = test titer value - blank titer value.
In the above mentioned experiment the volume of sodium hydroxide
consumed = 10.2 - 1.3 = 8.9 = V1.
Normality of sodium hydroxide N1 = 0.098
Volume of glycine used for titration V2 = 10 ml
Normality of glycine = N 2 = X
V1N 1 = V 2N 2
8.9 x 0.098 = 10 x X
X = 8.9 x 0.098 / 10
= 0.087
Therefore nomality of glycine (test) = 0.087 N
244
The weight of the substance and the normality are related by the equation
wt/litre = equivalent weight X normality. The normality of glycine is 75.
Therefore, The amount of glycine present in
1 litre of the given solution = 0.087 x 75
= 6.652 gms
Therefore, the amount of glycine present in 100 ml of the given solution
= 6.652 / 10 = 0.665 gms or 665 mg
For model calculation the titre values are taken as mentioned in the
table (brackets).
Result
The amount of glycine present in the whole of the given solution =
0.665 gm
Excercise
1. Maintain observation notebook for the entry of results obtained
from qualitative and quantitative analysis.
2. For qualitative analysis of carbohydrates and amino acids draw
three columns in your observation note books for test, observation
and inferences. Write the confirmation test and give your results.
3. For qualitative analysis the tabular column drawn should contain
the following details.
Sl.No. Test Observation Inference
1.
2.
Result The given unknown solution is found to contain -----------
4. For quantitative analysis draw tabular columns and enter your titer
values then perform the calculation.
Result : The amount of glycine / glucose present in the whole of the
given solution = -------------
245

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CONTENTS

7. Nucleic acids 134

10. Biochemical techniques 196

11. Practicals 227

1. Have nucleus with nuclear Do not have nucleus

1.2 Sub cellular Organelles

Fig. 1.3 Structural organisation of a cell membrane (Fluid

Fig. 1.5 A schemmatic diagram of mitochondria

Fig. 1.7 A schemmatic diagram of golgi apparatus

Fig. 1.8 A schemmatic diagram of Ribosomes

Fig. 1.9 A schemmatic diagram of lysosome

Fig. 1.10 Cytoplasm

pH = pKa + log [HA] / [A-] since -log H+ = pH and - log Ka = pKa

The above equation is known as Henderson - Hasselbalch equation.

I. Choose the correct answer from the given four alternatives.

3 Glycerose (or) Dihydroxy

5 Ribose, Xylose Ribulose

6 Glucose, Galactose Fructose

Simplest form of aldose - Glyceraldehyde

P lant A nim al P lant A nim al

Hydrolysis Glucuronic acid +

Chondroitin sulphate is made up of either glucuronic acid (A and C

Chondroitin Hydrolysis Gucuronic (or) Iduronic acid

Keratan sulphate consists of N-acetyl galactosamine, galactose and

Koshland’s induced fit hypothesis of enzyme-substrate interaction

C ytochrom e (C 1 ) + C ytochrom e (a)

In this reaction cytochrome C1 is oxidised and cytochrome a is

In this reaction the amino group from alanine is transferred to

P epsin S m aller peptides

Fig.3.3 Substrate concentration - activity relationship

Enzyme concentration (E)

Fig. 3.5 Mode of action of competitive inhibitor

COOH - a competitive inhibitor of succinate dehydrogenase

This type of inhibition can be reduced by increasing the

3.5.6.3 Non competitive inhibition

Fig. 3.7 Mode of action of non-competitive inhibitor

Fig.3.8 Mode of action of allosteric inhibitor

Monosaccharides Disaccharides Oligosaccharides Polysaccharides

Aldose Ketose eg. Malto triose

Fig. 4.1 Classification of Carbohydrates

Fig. 4.2 Classification of monosaccharides

They are also classified based on the number of carbon atoms

4.3.1.2 Physical properties of monosaccharides

D-glucose and L-glucose are mirror images of each other.

Ordinary light Nicol Prism Plane polarised

Fig. 4.3 Conversion of ordinary light to plane polarised light

Polarimeter is an instrument by which the specific rotations of optical

Plane polarised Before Plane polarised

Fig. 4.4 Rotation of plane polarised light

α D - Glucose D-Glucose β D- Glucose

+ 112.2° +52.7° + 18.7°

β, D glucose is forms β, D-methyl glucoside. In the same way,

D-Glucose D-Gluconic acid

D-Glucose Saccharic acid

When glucose is oxidised with hydrogen peroxide (H2O2),

D-Glucose Glucuronic acid

In this reaction only the primary alcohol is converted into carboxylic

CH 2 -OH CH 2 -OH CH 2 -OH

When glucose is reduced by sodium amalgam, sorbitol is formed.