Biochemistry slides notes
Biochemistry slides notes
macromolecules
MLS 218
Objectives
Identify the major classes of macromolecules
Differentiate between monomers and polymers
Describe the important structural features of
carbohydrates, lipids, nucleic acids and proteins.
Identify functional groups in macromolecules
Describe synthesis of polymers ( macromolecules)
Describe the formation of a glycosidic linkage.
Compare and contrast the structures, functions, and
locations of starch, glycogen, cellulose and chitin.
Identify an ester linkage and describe how it is formed.
Distinguish between saturated and unsaturated fats.
Describe the process that results in the production of
trans fat molecules
Distinguish between different types of protein structures
List the major components of a nucleotide, and describe
how these
monomers are linked to form a nucleic acid.
Explain several common functions of macromolecules
Macromolecules
THE FOUR CLASSES OF BIOLOGICAL MOLECULES
Lipids
Saturated, unsaturated, trans fats
Phospholipids
Steroids
Carbohydrates
Monosaccharides, glucose galactose fructose
Disaccharides sucrose (table sugar) maltose lactose
Glycosidic bond
Oligosachharides 3 TO 10
Polysaccharides 10 ABOVE --- Glycogen cellulose
Proteins
Amino acids
Primary, secondary, tertiary, quarternary structure
Nucleic acids
Nucleotides
DNA and RNA
Natural
Sugar acids are not natural (made by reaction)
Join 2 monomers
Dehydration reaction
Split 2 monomers
Hydrolysis Breaking any polymer
A polymer can be broken down to its monomers by addition of
a water molecule
Carbohydrates
Sugars and the polymers of sugars
Simplest carbohydrate monomers are
monosaccharides
More complex carbohydrate polymers are called
polysaccharides
Organic compounds with a 1:2:1 ratio between
Carbon, Hydrogen and Oxygen.
( CH2O)
Monosaccharides (simple sugars) C6H12O6 glucose,
deoxyribose, and ribose sugar
Disaccharides (two sugars joined ) -The bond
between two monosaccharides is called a glycosidic
bond e.g sucrose and lactose and maltose
Polysaccharides (complex sugars) starch, cellulose,
and glycogen
Cont..
Organic compounds with a 1:2:1 ratio
between Carbon, Hydrogen and Oxygen.
( CH2O)
Monosaccharides (simple sugars) C6H12O6
glucose, deoxyribose, and ribose sugar
Disaccharides (two sugars joined ) -The bond
between two monosaccharides is called a
glycosidic bond
sucrose and lactose and maltose
Polysaccharides (complex sugars) starch,
cellulose, and glycogen
Cont..
CHO
C=O
LACTOSE
Lactose intolerance
Inability to digest the sugar in milk
Caused by a lack of the enzyme lactase,
which hydrolyzes lactose into its
monosaccharides glucose and galactose
Bacteria in your gut can metabolize it
through fermentation though, which
produces hydrogen, carbon dioxide, and
methane
reason for nausea and vomiting
Polysaccharides
Many monosaccharides linked together through glycosidic bonds
The structure and function of a polysaccharide are determined by its sugar
monomers and the positions of glycosidic bonds
Two types of polysaccharides:
Storage
Starch- unbranched chain of glucose found in plants. Consists of α 1,4
glycosidic bonds
Glycogen-Branched chains of glucose found in animals ( liver and muscle).
Consists of α 1,4 and α 1,6 glycosidic bonds. The highly branched
structure permits rapid glucose release from glycogen stores, e.g., in
muscle during exercise
Structural
Cellulose -β 1,4 glycosidic bonds.The polysaccharide cellulose is a major
component of the tough wall of plant cells
Like starch, cellulose is a polymer of glucose, but the glycosidic linkages
differ
What is a fiber ?
Chitin is in the exoskeleton of arthropods and the cell walls of many fungi
Lipids
The only class that does not form polymers bec they are large molecules and cant join together
Unsaturated TO saturated
Cont…
3-D structure
more twists and more
bonds (Spherical)
helical
NO sub-units
Secondary
Tertiary-
3D
globular
Quaternary- consists
of 2 or more
3D globular structures
Peptide bonds
A. Amino acids in peptides are covalently linked
DNA-double stranded
MLS 218
CHS
Objectives
• Describe and discuss three stages of metabolism
• Describe various pathways of carbohydrate metabolism- both anabolic and
catabolic
• Differentiate between glycogenesis and glycolysis ,gluconeogenesis
• Explain TCA cycle.
• Give conditions for conversion of pyruvate to lactate, ethanol and acetyl
CoA
• Calculate the total number of ATP formed
• Enumerate and explain different types carbohydrate metabolism disorders
e.g glycosuria, different types of diabetes ,its complication and lab
investigations
• Discuss hormonal control of blood sugar level
• Interpret laboratory data
• Explain the relationship between carbohydrate, lipid and protein metabolism
Metabolism
CHS
digestion is the physical breakdown of larger molecules into smaller units
after absorption, molecules travel in blood stream to cells where metabolism occur to provide energy
What is metabolism?
Is the sum total of all the chemical ( enzymatic ) reactions
Involved in maintaining the living state of the cells/organisms
Carbohydrates digestion starts in the mouth (Amylase break starch) after digestion, should be
converted to glucose for energy. If not possible by digestion, the other monosaccharides taken to
liver to convert it to glucose (Fructose)
HUMAN BODY CAN ONLY UTILIZE D-GLUCOSE FOR ENERGY
anabolic
2. Anabolic reactions
Use small molecules to build large ones
Carbohydrates
Require energy Glucose (6C) Fatty acid
Amino acids
Carbohydrates break down fast to produce energy L ATP glycolysis
The best source of energy
Pyruvate
different stages
Lactate Acetyl CoA
4 H ATP
Electron transport chain/
Oxidative phosphorylation
Stages of Metabolism
CHS
5
NADH is also producing ATP by entering electron
transport chain/oxidative phosphorylation
(INDIRECT ATP production)
CHS
DIRECT ATP
Glycolysis
in cytosol with
production
oxygen ADP+P= ATP
Glycolysis in
mitochondria
with no
oxygen
ATP and Energy
CHS
irreversible reaction can become reversible by using different enzyme
reversible use the same enzyme to reverse
Adenosine triphosphate (ATP)
is the energy form stored in cells
is obtained from the oxidation of food
consists of adenine (nitrogenous base), a ribose sugar, and
three phosphoryl groups
During oxidation ATP is formed ADP and Pi
Fructose and
galactose will
go to the
liver to be
converted to
glucose to be
used for
energy
CHS
SKIP
Fates of the absorbed glucose
CHS
Fasting blood sugar
2 hrs post breakfast (Less than 140 mg/dl)
RBS "Random Blood Sugar" (more than 200 mg/dl diabetic) less than 200
mg/dl in normal
Integration of carbohydrate. Lipid and protein
metabolism
glucose is needed by the brain
CHS GO to the brain for energy but when absent, ketone bodies
(when glucose is absent)
irreversible provide energy to the brain bec
they can cross the barrier
HMP reversible with different enzyme stored mainly in
Nucleic Ribose5P and kidneys liver sometimes
acid hexokinase
muscles
enzyme
also can produce energy can be formed from amino acids (Proteins
breakdown/synthesis)
fats are used to produce energy and to
produce ketone bodies
Glycolysis
Gluconeogenesis
Citric Acid Cycle (Krebs Cycle)
Glycogen Metabolism
Electron Transport Chain
Oxidative Phosphorylation
Pentose-Phosphate Shunt
CHS
Oxidation of Glucose
10 reactions in glycolysis Anaerobic glycolysis
Aerobic glycolysis
14
Stages of Glycolysis
CHS
18
CHS
2
4
ketose
3 5
Triose phosphate
isomerase
DHAP
2 G-3P converted to 2 pyruvates
coverts to Pyruvate
CHS
Stage 2 of Glycolysis
2 NADH produced, 4 ATP produced
Net energy gain= 2 NADH, 2 ATP
2NAD to 2NADH
10
8 10
2NAD 2NADH
Lactate is not produced= Energy not produced bec it is converting NADH to NAD that is used in Lactate Pyruvate
glycolysis
CHS Glycolysis: Overall Reaction
When NADH enters ETC and ADP is phosphorylated to
produces ATP = Oxidative phosphorylation
In glycolysis,
two ATP add phosphate to glucose and fructose-6-phosphate
four ATP are formed in energy generation by direct transfers
of phosphate groups to four ADP
there is a net gain of 2 ATP and 2 NADH
G-3P DHAP
10
For reaction 1, if enzyme to convert glucose to G6P
Regulation of Glycolysis
is not there, glycogen can be used to produce ATP
(Glycogenolysis)
GLYCOLYSIS NADH
NAD+
LACTATE
IN AEROBIC
O2 is imp here
NADH enters ETC and then converts to NAD+
help in the
continuation of
glycolysis
Enters ETC for ATP (Form NAD+ "Oxidation") ---- ADP +Pi "Phosphorylation " (3 times)
Mitochondrial NADH
all give 3 ATP 1 NAD+ = 3ATP in ETC 1 FAD+ = 2 ATP
CHS Pyruvate: Aerobic Conditions
1 NADH ---- (Enters ETC at the beginning) ---- (ADP + Pi) (ADP + Pi) (ADP + Pi) = 3 ATP
27
Pyruvate is converted to Acety CoA in mitochondria (Pyruvate moves to the mitochondria "whole reaction inside")
Pyruvate: Anaerobic Conditions
CHS
Under anaerobic conditions (without oxygen),
pyruvate is reduced to lactate
NADH oxidizes to NAD+ allowing glycolysis to continue
28
CHS Lactate in Muscles
31
CHS
Cori Cycle
32
Pyruvate can give ATP when not exercising (Pyruvate will not convert to glucose, it will
be converted Acetyl CoA)
CHS Transport of cytosolic NADH
The inner membrane is impermeable to hydrophilic substances. Has
special transport systems for the following:
1. Glycolytically produced cytosolic NADH.
2. Mitochondrially produced metabolites (OAA, acetyl-CoA) for
cytosolic glucose formation and fatty acid biosynthesis.
3. Mitochondrially produced ATP must go to cytosol where ATP-
utilizing reactions take place
Example: cytoplasmic shuttle systems transport NADH across inner
membrane
The glycerol phosphate shuttle is a secondary mechanism for the
transport of electrons from cytosolic NADH to mitochondrial
carriers of the oxidative phosphorylation pathway.
The primary cytoplasmic NADH electron shuttle is the malate-
aspartate shuttle. NADH = 3 ATP
FADH = 2 ATP
CHS
Glycerol Phosphate Shuttle
Secondary mechanism
Uses an enzyme glycerol -3- phosphate
dehydrogenase
Dihydroxyacetone phosphate + NADH =----(glycerol-3-phosphate dehydrogenase)----= NAD+ + Glycerol-3-phosphate
Glycerol-3-phosphate + FAD =----(flavoprotein dehydrogenase)----= FADH2 + dihydroxyacetone phosphate from glycolysis
FADH2 -------- ETC
From glycolysis
The electrons of glycerol-3-phosphate are
transferred to FAD (yielding FADH2) and
DHAP is produced.
converts FAD to FADH
NAD+ + Glycerol-3-phosphate
protein synthesis
Glycolysis is also involved partially in protein metabolism
Glycogenesis
CHS
Excess glucose leading to excess glucose-6-phosphate
Liver and muscle store glucose by converting glucose to
glycogen 2nd option to convert to glycogen bec 1st is giving ATP (energy)
operates when high levels of glucose-6-phosphate are
formed in the first reaction of glycolysis
does not operate when energy stores (glycogen) are full,
which means that additional glucose is converted to body fat
Muscle glycogen- provides glucose (glucose 6-PO4) for
glycolysis
Liver glycogen- provides glucose to maintain blood
glucose level
Normally, insulin and absorption maintain blood glucose level, but in fasting, no hormones or
starvation then the liver takes place for the production of glucose from glycogen
39
Diagram of Glycogenesis
CHS when 10 glucose are attached (With alpha 1,4 glycosidic bond) by glycogen synthase, then branching glucose will add one branch (With alpha 1,6 glycosidic bond)
happening
again and
again
add free
glucose
molecules
40
CHS
Glycogenolysis
In glycogenolysis,
glycogen is broken down to
glucose
glucose molecules are
removed one by one from the
Glycogenesis
end of the glycogen chain to Glycogenolysis
yield glucose-1-phosphate
41
CHS
Glycogenolysis
Glycogen phosphorylase
removes most glucose residues
as Glc-1-P
Molecules left after complete
only from the spread chain (Straight) in the
form of glucose-1-phosphate
phosphorylase digestion of
glycogen are Limit Dextrins
will form 6 "Glucose-1-phosphate" as it will remove 6 from the chain
4 will left as it cannot go bypass (Limit Dextrins)
less glucose are here (Not 10), we should call this structure Limit Dextrins
CHS
Glycogenolysis
"Debranching enzyme" having different 1. a-1,4->1,4 Glucosyl
activities that are mentioned here
transferase activity transfers
three residues to another chain
2. Amylo a-1->6 Glucosidase-
hydrolytic activity releases Glc
Major Final Product of
to remove the branched ones
It cuts 3 only and joins them to the
spread (unbranched) chain
Glycogen Degradation is Glc-1-
P
To Complete Glycogen
Degradation, Need to Convert
It is a free glucose molecule
it wont be added to the straight chain
Glc-1-P to Useful Form
CHS
Glycogenolysis
Glycogenolysis
is activated by glucagon (low blood glucose)
bonds glucose to phosphate to form glucose-1-phosphate
Glycogen-glucose + Pi glycogen + glucose-1-phosphate
44
CHS
Isomerization of Glucose-1-Phosphate
In the muscle ,The glucose-1-phosphate isomerizes to glucose-6-
phosphate, which enters glycolysis for energy production.
45
CHS Glucose-6-Phosphate
Glucose-6-phosphate
hydrolyzes to glucose in the liver and kidney, where
glucose-6-phosphatase is available, providing free glucose
for the brain and skeletal muscle
46
CHS
Uridine diphosphate
know the number, eponym (Name), enzyme deficiency, lab findings
CHS
Gluconeogenesis
CHS
Is the synthesis of
glucose from carbon
atoms of
noncarbohydrate
compounds
required when glycogen
4 enzymes are needed to reverse
stores are depleted the irreversible reactions of
glycolysis in gluconeogenesis
51
Gluconeogenesis:Phosphoenolpyruvate to
CHS
Fructose-1,6-bisphosphate
Phosphoenolpyruvate is converted to fructose-1,6-
bisphosphate using the same enzymes in glycolysis.
(BLUE) = Different
52
CHS
Glucose Formation
fructose-1,6-bisphosphate forms fructose-6-
phosphate and Pi with help of enzyme frucose -6-
bisphosphatase
a reversible reaction converts fructose-6-phosphate
to glucose-6-phosphate
G -6 Phosphate is converted to glucose with the help
of enzyme glucose-6-phosphatase
53
Glycolysis and gluconeogenesis
CHS
CHS
CHS
Comparison of Regulation of Glycolysis
and Gluconeogenesis
some of the regulatory factors are working
against each other
reversed
56
Glycolysis is complete
CHS
Reciprocal control of glycolysis and
gluconeogenesis
CHS
Citric Acid Cycle
58
Summary of the Citric Acid Cycle
CHS
59
CHS Summary of the Citric Acid Cycle
1. Pyruvic acid is converted to acetyl CoA in three main steps.
• Decarboxylation.
• Oxidation.
• Formation of acetyl CoA.
KNOW WHAT IS PRODUCED IN EACH REACTION
2. An eight step cycle generating:
• Three molecules of NADH + H+.
• One molecule of FADH2.
• Two molecules of CO2
• One molecule of ATP.
6NADH 2FADH2 2ATP 4CO2
61
TCA cycle is at the intersection of carbohydrate,
CHS
lipid and protein metabolism
the common pathway that they enter is the citric acid cycle
CHS
Link between carbohydrate,lipid and
protein metabolism
RED are the intermediate of the citric acid cycle "What is formed throughout the pathway"
CHS ATP from Citric Acid Cycle
Because each glucose provides two acetyl CoA, two turns of the
citric acid cycle produce 24 ATPs.
2 Acetyl CoA 4CO2 + 24ATP (two turns of citric acid cycle)
64
CHS
ATP from Glucose
net gain in glycolysis= 2 ATP + 2 NADH
65
CHS
Hormonal control of blood sugar
• The activity of the liver in maintaining the normal blood sugar level
is controlled by several different hormones.
• Insulin
• Epinephrine
for maintenance
• Glucagon
• Cortisol others increase or decrease the level
• Growth Hormone.
Hormones controlling blood sugar
CHS
1. Insulin produced by pancreas, perform the following functions:
when glucose removed from the blood and enters the cell "
Utilized" (Glycolysis) if energy is required to produce ATP
CONVERTS TO GLUCOSE-6-PHOSPHATE and then to
glycogen "Glycogenesis" NO ATP needed catabolic
enough stored, then converts to fats and proteins Occur in fat breakdown
can also occur from glucose and fat breakdown but not here
anabolic
Also occurs: intermediates of TCA are made up of proteins and thus protein synthesis could occur if no intermediates
are there, and TCA need to occur
Hormones controlling blood sugar
CHS
• Insulin :The principle function of insulin is the removal of glucose from
bloodstream and lowering blood glucose level.
• It increases the uptake of glucose by extrahepatic tissues (heart, skeletal muscles
and adipose tissues).
GLYCOGENOLYSIS, GLUCONEOGENISIS,
FAT BREAKDOWN...........
CHS Insulin verses Glucagon
Insulin
Glucagon
+
-
glycolysis
Glucose Pyruvate
gluconeogenesis
-
+ -
Glucagon Insulin
Glucose homeostasis
CHS EXTRAHEPATIC CELLS= it is utilized "Glycolysis (Glucose oxidation)"
Body
cells
2 sites of action take up more
Insulin glucose
Beta cells
of pancreas stimulated
to release insulin into
the blood Liver takes Blood glucose level
up glucose declines to a set point;
High blood and stores it as stimulus for insulin
glucose level glycogen release diminishes
STIMULUS:
Rising blood glucose
level (e.g., after eating
a carbohydrate-rich Homeostasis: Normal blood glucose level
meal) (about 90 mg/100 mL) STIMULUS:
AND TRIGLYCERIDES Declining blood
less than 200 glucose level
(e.g., after
skipping a meal)
most commonly performed test in clinical lab is glucose test (As it shows metabolism and many other
processes )
CHS Glycosuria
Normal human urine does not contain Glucose (Presence = Abnormality)
1-Glucosuria:
2-Fructosuria
1-Alimentary fructosuria:following ingestion of
large amount of fructose.
2-Essential fructosuria due to hereditary deficiency
of fructokinase.
3-Galactosuria
1-Alimentary :following by ingestion of large amounts
of galactose,particularly in patients with hepatic
function impairment.
2-In cases of galactosemia
CHS
Causes and Types of glucosuria
A- Hyperglycemic glucosuria:
It occurs when the blood glucose level exceeds the renal threshold
(180mg/dl) and is caused by :
-Diabetes mellitus .
-Epinephrine glucosuria as emotional or stress glucosuria or in case of
pheochromocytoma (epinephrine secreting tumor).
-Alimentary glucosuria
It is due to increased rate of glucose absorption as in cases of
gastrectomy or gastrojejunostomy.
-Experimental glucosuria
a)Alloxan diabetes ;destroy the Beta cells of pancreas.
Alloxan is a toxic glucose analogue,
b)Diabetes with pancreatectomy.
CHS Causes and Types of glucosuria
CHS
Diabetes producing insulin. Diabetes mellitus starts with high blood sugar and because
of this, other issues occur. It is a group of diseases as other metabolic
disturbances are there
Once diabetic don't eat much sugar
Diabetes mellitus (DM) is a group of diseases
characterized by high levels of blood glucose resulting
from defects in insulin production, insulin action, or
both.
Diabetes mellitus may present with characteristic
symptoms such as thirst, polyuria, blurring of vision,
and weight loss.
The metabolic disturbances are accompanied by loss
of carbohydrate tolerance, fasting hyperglycemia,
ketoacidosis, decreased lipogenesis, increased
lipolysis, increased proteolysis and some other
metabolic disorders
In its most severe forms, ketoacidosis or a non–ketotic
hyperosmolar state may develop and lead to stupor,
coma and, in absence of effective treatment, death.
CHS
Types of Diabetes
❖LADA (
glucose level of more than 165 mg/dl, or a 3-hour If only 1 is high, then
keep monitoring
glucose level of more than 145 mg/dl.
The glycemic control target for GDM is preprandial
▪ ≤ 105 mg/dl (5.8 mmol/L) and either
▪ 1 hr post meal ≤ 155 md/dl (8.6 mmol/L) or After
▪ 2 hr post meal ≤ 130 mg/dl (7.2 mmol/L) treatment
Every diabetic person passes through this stage but they dont know bec no
symptoms
CHS Diagnosis of diabetes mellitus
Glucose from Mg to mol = divide by 18
A. Acute complications
• Hypoglycemia
• Ketoacidosis
• Hyperosmolar hyperglycemic nonketotic coma
B. Chronic complications
• Diabetic micro- and macrovascular changes
• Diabetic neuropathy
• Diabetic retinopathy
• Diabetic nephropathy
CHS
Acute complications
1. Hypoglycemia ( 3.3mmol/l of blood glucose) - results from:
a) exogenous causes - overdose of insulin plus inadequate
food intake, increased exercise
- overdose of oral hypoglycemic agents
- alcohol
- other agents (e.g. salicylates)
b) endogenous causes - insulinoma
• Oral hypoglycaemic
B therapy
C • Insulin Therapy
CHS
Management of DM
CHS
Hb A1c monitored in 3 months bec RBCs survive for 120 days (3 months)
Test usually takes 3 hours but can last as long as 6 hours (extended
OGTT).
The first blood sample and the first urine sample are collected
between 7 A.M. and 9 A.M., after you have fasted for 12 hours.
Operator gives a test load of glucose, usually 75 – 100 gram
dextrose / 300 ml water, lemon flavored . Drink the entire solution
in 5 minutes.
Blood samples are collected at 60 min., 90 min.,120 min. and
sometimes immediately after drinking oral glucose solution.
Dose of Oral Glucose:
Dextrose :1 – 1.75 g/kg. body wt. (for adults0 and not exceeds 100
g. It is to be dissolved in 250 – 300 ml lemon flavored water.
Samples
Blood samples ; fasting(basal) sample, after oral glucose load,
60min, 90min,120min. (in extended OGTT another 2 samples will
be taken at 2½hour and 3 hours). most important 1hr, 2hr. 3hr
CHS
Types of curves- OGTT
1. normal curve
2. diabetic curve
3. precipitated curve
4. flat curve
5. renal glycosuria curve
MLS 218
OVERVIEW
Glucose is the most common
monosaccharide consumed by humans, and
its metabolism has been discussed
extensively.
However, two other monosaccharides—
fructose and galactose—occur in significant
amounts in the diet, and make important
contributions to energy metabolism.
In addition, galactose is an important
component of cell structural carbohydrates.
FRUCTOSE METABOLISM
Trios isomerase
DISORDERS OF FRUCTOSE METABOLISM
Fructokinase deficiency-Essential fructosuria
✓ A deficiency of one of the key enzymes required for the entry of
fructose into intermediary metabolic pathways can result in this
benign condition
Aldolase B deficiency (hereditary fructose intolerance, HFI),
✓ The first symptoms of HFI appear when a baby is weaned and begins
to be fed food containing sucrose or fructose.
✓ Fructose 1-phosphate accumulates, resulting in a drop in the level
of inorganic phosphate (Pi) and, therefore, of ATP.
✓ ATP falls, AMP rises. In the absence of Pi, AMP is degraded, causing
hyperuricemia. When conducting tests:
low inorganic phosphate which means low ATP
High uric acid
Protein A is a β-D-gatactosyl
transferase, and is found in a number of
body tissues. In tissues other than the
lactating mammary gland, this enzyme
produces N-acetyl lactosamine— a N-
linked-glycoprotein. function not related to milk in other tissues
Cont…
Protein B is found only in lactating
mammary glands. It is a-lactalbumin, and
its synthesis is stimulated by the peptide
hormone, prolactin.
Protein B forms a complex with the
enzyme, protein A, changing the
specificity of that transferase so that
lactose, rather than N-acetyl lactosamine,
is produced both proteins together
produce lactose
Pentose Phosphate Pathway
( HMP)
MLS 218
Objectives
To understand the function of the
pentose phosphate pathway In production
of NADPH and precursors for nucleic
acid synthesis.
Introduction 4th option for glucose-6-phosphate to convert
Metabolism of Lipid
MLS 218
Objectives
CHS
1. To understand Lipid digestion and absorption.
2. To describe the mechanism of glycerol and fat oxidation.
3. Explain synthesis of phosphatidic acid and list different membrane
phospholipids
4. To become familiar with the amount of energy produced during the
oxidation of fat.
5. To describe process of digestion, absorption and synthesis of lipids
6. Describe the types and role of lipoproteins
7. Explain ketogenesis and ketosis
8. Explain cholesterol metabolism and its role in atherosclerosis
9. Desribe fatty liver and lipotropic factor
10.Explain the effects of hormones on lipid metabolism
11. Explain different types of hyperlipoproteinemia
12.Interpret the cases of various metabolic disorders
CHS
Metabolic Interrelationship
lipolysis
free glycerol
CHS cannot be transferred to the
Lipid absorption blood independently, it
needs proteins
by lipoprotein
directly
cholesteryl esters.
• Surrounding the core is a
layer of phospholipids in
which varying proportions
of proteins and cholesterol
are embedded.
8
CHS
Lipoproteins
Tests done for liver profile:
total cholesterol
total glycerol
LDL
HDL
VLDL
IDL 1.006-1.019 25 - 50 18 22 31
10
Lipoprotein- general structure
CHS APO
APOLIPOPROTEIN
• major components of
lipoproteins often referred to
as apoproteins
• classified by alphabetical
designation (A-E) 5 classes
• the use of roman numeral
suffix describes the order in
which the apolipoprotein
emerge from a
chromatographic column
Apoproteins
CHS
• A-I : principal protein in HDL
• activates LCAT(Lecithin-cholesterol acyltransferase) is an
enzyme that converts free cholesterol into cholesteryl ester
• A-II– occurs mainly in HDL
• enhances hepatic lipase activity
• B-48 – found only in chylomicron
– lacks the LDL receptor-binding domain of apo-B-100
• B-100– in LDL. binds to LDL receptor also in IDL but mainly LDL
• C-I – found in chylomicron, VLDL, HDL may also activate LCAT
• C-II - found in chylomicron, VLDL, HDL activates lipoprotein
lipase
• C-III - found in chylomicron, VLDL, IDL, HDL inhibits lipoprotein
lipase
• D - found in HDL also called cholesterol ester transfer protein
(CETP)
• E - found in chylomicron, VLDL, I DL
CHS
- +
Origin CM b Pre-b a
mainly
other names of the lipoproteins diseases
are relayed
to these
TG-rich
core
same CE-rich
receptors
TG-rich cholesterol
secretion
HDL
HDL
CHS Lipoprotein Metabolism
cholesterol from the
tissues to the liver to be
stored
Liver Endogenous
Cholesterol LDL-R
Extra Hepatic
Intestine Dietary
Cholesterol Tissue
Remnant
Receptor
129 TOTAL
Breakdown of Triacylglycerols
CHS
Triacylglycerols undergo hydrolysis to
fatty acids and glycerol.
Fate of Fatty acids
Resynthesis of triacylglycerols for
storage can be used for energy or to synthesis other fatty acid
Conversion to acetyl-SCoA
Fate of Glycerol
glyceraldehyde 3-phosphate and
DHAP, which participate in
Glycolysis—energy generation
Gluconeogenesis—glucose formation
Triacylglycerol synthesis
The lipases break the triacylglycerols down to fatty acids
and glycerol
19
The fatty acids are transported in the blood by serum
albumin
CHS
glycolysis reaction
gives 3ATP
AcylCoA
appears like 1
not Acetyl ATP but it is 2
30 ATPs used
M=mono + 2P
CHS Fatty Acid Transport
• the fatty acyl group combines with carnitine
• the fatty acyl molecule moves across the inner
membrane into the mitochondrial matrix for
oxidation
intermembrane but
cannot pass the inter
inner membrane membrane
32
CHS β-Oxidation
that is why called B-oxidation
CHS β-Oxidation
In reaction 1, oxidation In reaction 3, a second
• removes H atoms from the oxidation
a and b carbons • forms a keto group on the b
• reduces FAD to FADH2 carbon
• reduces NAD+ to NADH +
H+
In reaction 2 , hydration In reaction 4, Cleavage
• adds water • forms shortened fatty acyl
• forms a hydroxyl group CoA that repeats steps 1–4
(—OH) on the b carbon of b oxidation
CHS Equation for One Cycle of b Oxidation
one
35
Fatty Acid Length and b Oxidation
CHS
36
CHS
ATP and b Oxidation
Activation of a fatty acid requires 2 ATP.
37
CHS
ATP for Lauric Acid C12
38
CHS
Learning Check
The total ATP produced from the b oxidation of
stearic acid (C18) is:
18/2 = 9 AcetylCoA
9-1 = 8 Cycles
12 x 9= 108ATP
1) 108 ATP 8 Cycles:
8 NADH = 24
3) 148 ATP
39
CHS
Solution
The total ATP produced from the b
oxidation of stearic acid (C18) is:
2) 146 ATP
40
Ketone Bodies
When person is facing diabetic ketoacidosis OR after breakdown
in diabetes it is dangerous
because already there is
glucose for the brain so it
might be fatal
CHS
If carbohydrates are not
available,
• body fat breaks down to meet reversible so go to TCA
cycle in brain
43
Ketosis
CHS
47
Citrate Shuttle
CHS
48
Lipogenesis
CHS
• Needs two initial reactions:
– (1) transfer of an acetyl group from acetyl-CoA to an acyl
carrier protein (ACP)
– (2) conversion of acetyl- CoA to malonyl-CoA
AcetylCoA
AcetylCoA
49
2C
CHS
Lipogenesis
The result of the
first cycle in fatty
acid synthesis is the
addition of 2 C
atoms to an acetyl
group to give a 4-
carbon acyl group.
50 4C
Then the cycle repeats until we get 16C
fatty acid
CHS Lipogenesis
• After seven trips through the elongation, a 16-carbon
palmitoyl group is produced. Larger fatty acids are
synthesized from palmitoyl-SCoA with the aid of
specific enzymes.
51
CHS
Lipogenesis: Fatty Acid Synthesis
no double bond
• Increases on high
2 reactions "Saturated"
-Desaturation: Adds double bond
-Elongation: large fatty acids
carbohydrate diet.
• decreases on high fat diet or 16 is carbons. 1 is the
double bond. 9 is the
position of the double
bond (Between 9 and 10)
3. Overall synthesis
53
CHS
Regulation of Fatty Acid Synthesis
• a high level of blood glucose and insulin
stimulates glycolysis and pyruvate oxidation
• more acetyl CoA is available to form fatty
acids
54
CHS
b Oxidation and Fatty Acid Synthesis
55
CHS
Hormonal Control
Insulin
a. Increased fatty acid synthesis
b. Decreased mobilization of stored fats
c. Decreased gluconeogenesis
d. decreased ketogenesis
Glucagon
a. Decreased fatty acid synthesis
b. Increased mobilization of stored fats
c. Increased gluconeogenesis
d. Increased oxidation
CHS Other hormones
a. ACTH Increases ketogenesis
b. Glucocorticoids in the absence of insulin
leads to ketogenesis
c. Epinephrine in the presence of adrenocortical
hormones stimulates ketogenesis
d. Thyroxine decreases plasma cholesterol
e. Thyroxine therapy in conjunction with
inadequate insulin a can cause ketogenesis
Obesity "Disorder"
CHS no balance between intake and utilization
• Obesity is a medical condition in which excess body fat
accumulates
• Body mass index (BMI), defines people as overweight (pre-
obese) if their BMI is between 25 and 30 kg/m2, and obese
when it is greater than 30 kg/m2
• caused by a combination of excessive food energy intake,
lack of physical activity, and endocrine disorders etc.
• increases the likelihood of various diseases, particularly
heart disease, type 2 diabetes and hypertension stroke, kidney
problems
Obesity
CHS
Food
adipose tissue
adipose
tissue
fatty acids &
triacyl- Obesity
glcerols
Work
or ADP
Growth
ATP
Heat
CO2 + H2O
CHS
Structure and function of cholesterol
1. Function of cholesterol: needed but not in very high level
1.Formation of
mevalonate
2.Conversion to
activated isoprene
3.Polymerization of
isoprene
4.Cyclization of
squalene
CHS
Regulation of Cholesterol Synthesis
STATINS= lipid lowering drug
it inhibits the enzyme (HMG-CoA reductase) in the first stage. If inhibited then no cholesterol
One molecule of β-hydroxy-β-methylglutaryl-CoA
(HMG-CoA) is formed from three acetyl-CoA
molecules in the cytosol via the same reactions as
occurring in mitochondria for ketone body formation.
HMG-CoA reductase (an integrated membrane
protein in the smooth ER) catalyzes the irreversible
reduction of HMG-CoA (using two molecules of
NADPH) to form mevalonate: committing the
acetyl groups for cholesterol synthesis (thus being a
major regulation step).
CHS
Free bile
Classification Conjugated bile acids
acids
Glycocholic
Cholic acid Taurocholic acid
acid
Primary bile
acids Glycocheno-
Chenodeoxy- Taurocheno-
deoxycholic
cholic acid deoxycholic acid
acid
Deoxycholic Glycodeoxy- Taurodeoxy-
acid cholic acid cholic acid
Secondary
bile acids
Lithocholic Glycolitho- Taurolitho-cholic
acid cholic acid acid
CHS
Atherosclerosis deposition of cholesterol
due to plaque formation
73
Hypercholesterolemia
CHS
CHS
Fredrickson Classification
Type Elevated Associated clinical Serum Serum
particles disorders TC TG
I Chylomicrons ↔
Lipoprotein lipase deficiency, normal ↑↑
very high
apolipoprotein C-II
deficiency
IV VLDL Familial ↔↑ ↑↑
could be normal
hypertriglyceridemia, familial or moderately
high (Normal
combined hyperlipidemia, but close to
sporadic high)
hypertriglyceridemia,
diabetes
V Chylomicrons, Diabetes ↑ ↑↑
VLDL
CHS Hypolipoproteinemia
• Hypobetalipoproteinemia • Abetalipoproteimnemia
✓low LDL an d VLDL ✓ Absence of β-lipoproteins
✓Normal HDL ✓ Lipid accumulates in
• Hypoalphalipoproteinemia intestinal cells
✓ decrease in circulating HDL
✓ Excessive deposition of
cholesterol esters in many
tissues
– An extreme form -
Tangier Disease
79
asymptomatic at the beginning
CHS
Fatty liver
• Fat makes up greater than 10% of the liver by weight, then
the condition is classified as fatty liver disease (FLD).
• Two types of FLD are generally recognized.
Alcoholic fatty liver disease results from excessive alcohol
intake.
Non-alcoholic fatty liver disease
✓ there is a imbalance between lipogenic (fat producing) and
lipotrophic (decreasing the deposit of fat) factors;
✓ insulin resistance plays an important role
✓ can be caused by a wide variety of factors including fat
rich diets, metabolic syndromes, obesity etc.
CHS
Laboratory Abnormalities
2-4 fold increase in liver enzymes SGPT and
SGOT
SGOT:SGPT ratio less than 1
SGOT:SGPT ratio more than 1 if cirrhosis sets
in
TG high
Fasting and pp sugar high
ALP slightly high
CHS
Summarry
Nucleic Acid Metabolism And
Disorders
MLS 218
Objectives
Pancreatic carboxypeptidase
Nucleotidases
Dipeptidases, carboxy-
Small peptidase, and
Nucleosides
intestine Disaccharidases aminopeptidase
(enzymes Nucleosidases
from and
phosphatases
epithelium)
Nitrogenous bases,
end product is separation of
Monosaccharides Amino acids sugars, phosphates these
Enzymes for breakdown of Nucleic Acids
❖ Nuclease, a pancreatic enzyme that cleaves nucleic acids belong to the class
of enzymes called hydrolases, are usually specific in action, ribonucleases
acting only upon ribonucleic acids (RNA) and deoxyribonucleases acting only
upon deoxyribonucleic acids (DNA).
DNA:
A -T
G-C
RNA:
A-U
G-C
C
H
Uracil
(U)
RNA
only
ONLY KNOW NAMES NOT STRUCTURES
Pentoses Found in Nucleic Acids Numbering System of Purine & Pyrimidine Nucleosides
The upper end of the normal range of uric acid is children bite
360 µmol/L (6 mg/dL) for women and 400 µmol/L their fingers
difference in
enzyme,
substances required
ammonia
CO2
Amino acid "Glutamine"
+ PRPP
De novo Pyrimidine Synthesis
Protein
Metabolism
Objectives
Explain digestion of proteins
Explain nitrogen balance
Differentiate and explain essential, non essential,
glucogenic and ketogenic amino acids
Comment on the role of transamination and oxidative
deamination
Explain ammonia intoxication or hyperammonemia
Explain synthesis of urea and disorders of urea cycle
enzymes
List the plasma protein and their functions
Comment on the role of hormones on protein
metabolism
List and identify the clinically significant NPN
compounds
proteins are the last source of energy
In protein metabolism,
ammonia is secreted outside
the body through urine (It major source of nitrogen in the
body
passed through blood).
Ammonia is converted to urea
to be secreted. Urea is
nontoxic.
provide energy
form intermediate of TCA cycle and pyruvate
Precursors for ketone bodies
prolonged immobility
Lactation
and stress
Recovery after
Immediately after
surgery,burns,trauma,s
surgery and crush
tress
injuries
Digestion of dietary proteins starts in the stomach. No digestion in mouth
Nitrogen metabolism is the same as protein metabolism as the main purpose of this metabolism is the removal of nitrogen. Nitrogen can
form ammonia and thus can be considered toxic. Ammonia is removed in the form of urea (Not toxic)
Cont…
Chymotrypsin
carboxypeptidase A
carboxypeptidase B
elastase
OVERVIEW OF AMINO ACID METABOLISM
from diet
Degradatio Purines
Pyrimidines
n Porphyrins
(required)
Carbon
Nitrogen
skeletons
(ketogenic) (glucogenic)
Urea Used for
energy pyruvate
acetoacetate by converting, α-ketoglutarate convert to glycolytic or Kerbs cycle
acetyl CoA the carbon
succinyl-CoA intermediates
skeleton gives
energy fumarate
if the protein is glycine = Carbon oxaloacetate
skeleton of glycine. If it gives glucogenic amino group (NH2) is removed in the breakdown and it is the one
then called glucogenic glycine......... converted to the non toxic form
(Depending on the product) The remaining structure without (NH2) is called the carbon skeleton
and can also convert to other forms (Glucogenic, Ketogenic,
Glucogenic + Ketogenic "If giving from both")
First phase of amino acid metabolism
Removal of α-NH2 groups by transamination and subsequent Almost all proteins go
oxidative deamination leads to formation of ammonia andalpha keto
through transamination
corresponding keto acid (carbon skeleton) glutarate "Keto acid" and
produce glutamate "Amino acid"
Different amino acids can form
Small amount of ammonia is excreted in urine but most isdifferent keto acids but it is always
used in synthesis of urea the same alpha keto glutarate and
giving glutamate because
or NADP
if ammonia is not removed,
GDP after oxidative deamination
glutamate level is low and
ammonia accumulates
from transamination
irreversible
glutamate + NAD(P)+ a-ketoglutarate +
NAD(P)H + NH4+
now alpha ketoglutarate is low, and TCA is not happening, and the brain is not getting energy "Harmful affect of hyperammonemia"
TREATMENT
limiting protein intake to the amount barely
adequate to supply amino acids for growth,
while adding to the diet the a-keto acid
analogs. take only the needed amount
toxic
non toxic
Glucose-Alanine Cycle in muscle cells
Alanine transports
amino groups from
muscle to liver in non from muscle glycolysis
In muscle amino
to bring new
protein
as glutamate
Glutamate transfers
its amino group to transamination
pyruvate (obtained
Catalyzed by ALT
alpha keto...
glycolysis) in presence
of ALT to form alanine
Glucose Alanine cycle
Alanine passes into the
blood and travels to the
liver
Liver ALT transfers amino
group from alanine to α-
KG to form pyruvate and
Glutamate
Glutamate enters
mitichondria and is
acted upon by GDH to
release ammonia
Pyruvate by
gluconeogenesis is
converted to glucose .
Liver glucose travels
through blood to muscle
Urea cycle UREA HAS 2 NITOGENS
Urea synthesis occurs in the LIVER
Kidneys only excrete urea in urine
The urea cycle eht sa nwonk osla( ornithine cycle
Urea passes into the kidneys via the bloodstream and is finally
excreted in urine.
The first two reactions of urea cycle occurs in mitochondrial
matrix while the next three reactions occur in the cytosol
The 2 nitrogen atoms of urea enter the Urea Cycle as NH3
(produced mainly via Glutamate Dehydrogenase) and as the amino
N of aspartate.
Synthesis of 1 molecule of urea requires 3 molecules of ATP plus 1
molecule each of ammonium ion and of α amino nitrogen of
aspartate
Carbamoyl Phospahte Syntahase I (CPS I) is the rate limiting
enzyme and is activated by N-acetylglutamate
CO2 "From TCA" + Ammonia "From oxidative deamination " 2 nitrogens (1 from ammonia and another from reaction 3 "
Aspartate") UREA CYCLE
urea is released
enzyme
ATP utilization
transporter
Activator
amino acid
transporter
ENZYMES are imp
in the mitochondrial matrix
TCA Cyle
intermediates
Fate of Urea
Urea diffuses from the liver and is transported in
blood to the kidneys, where it is excreted in the
urine
Small amount of urea diffuses from the blood to
intestine where it is cleaved to CO2 and NH3 by
bacterial urease
In patients with kidney failure plasma urea
levels are elevated greater transfer of urea
from blood to gut . The intestinal action of urease on
this urea Hyperammonemia
Urea cycle disorders UCDs
Aspartate LYS
Tyr
MET PHE TRP
Asparagine THR
Tyr
ILE
Biosynthesis of Amino acids
IV. Ribose-5-Phosphate
III. PYRUVATE
Glutamate
Serine
Arginine Glycine
Glutamine Cysteine
Pro
know reactions
NO STRUCTURES
Conversion of Amino acids
to specialized products
GABA-is synthesized from glutamate
Histamine from histidine
cofactor
Catecholamines- are synthesized from tyrosine
2 reactions
Insulin enough glucose = enough energy = no need for proteins for energy
Fibrinogen
(4%) (1%)Other PlasmaProteins Albumin (60%)
Globulin (35%)
Globulin (35%)
(60%)
Other Plasma
Proteins (1%)
Other Plasma Proteins
α1 - globulins
α2 - globulins each one has several proteins
β1 - globulins
β2 - globulins
γ - globulins
bec B
called gamma
immunoglobulins
alpha
Common functions of plasma proteins
Proteins are structural materials of animal body and
help in the growth of animal body
buffer properties (maintenance of pH)
build new tissues and maintain already present
tissues protein helps in healing wounds
Some act as biochemical catalyst
maintenance of osmotic pressure of blood
Prevention of thrombosis (anticoagulant proteins)
Defense against infection (antibodies, complement
proteins)
Albumin most abundant