Biocomputing
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Recent papers in Biocomputing
در هزاره سوم بكارگيري تكنولوژي براي توسعه اقتصاد، دستيابي به علوم و فنون جديد، آموزش، توسعه اجتماعي، امري اجتناب ناپذير است. به واسطه دستيابي به تكنولوژي نوين داشتن اطلاعات و برقراري ارتباطات نيز ضروري و نفي در آن انكار ناپذير است. وري... more
Today, biomimetic approaches to unconventional computing have been exploring neurotransmitters' roles. But hormonal aspects of artificial cognition are still unexplored. And from a cognitive perspective, such a complex biochemical... more
Integral to the reproductive processes of the biota of several forest, shrub, and grassland biome-types, wildfire ignites some 3,400,000km2 of Earth’s vegetated surface annually. Though a highly complex phenomena coupled with not one, but... more
To date, a number of researchers are seeking for and/or designing novel molecules which function as arithmetic molecular engines. Biomolecules such as deoxyribonucleic acid (DNA) and proteins are examples of promising candidate molecules.... more
Single Nucleotide Polymorphisms (SNPs) are the most common source of genetic variations. There has been enormous research in the area of Biocomputing and Bioinformatics on identification and analysis of SNPs. A large number of methods... more
Modern genomic research has access to a plethora of knowledge sources. Often, it is imperative that researchers combine and integrate knowledge from multiple perspectives. Although some technology exists for connecting data and knowledge... more
Biophotonic(Bio-optical) quantum information based DNA molecular computing By Joel Taylor(S.T.A.R. LABS) Biophotonic(Bio-optical) quantum information based DNA molecular computing is a convergence of biological and photonic computing. It... more
Standard analysis methods for genome wide association studies (GWAS) are not robust to complex disease models, such as interactions between variables with small main effects. These types of effects likely contribute to the heritability of... more
Reduction of preventable hospital readmissions that result from chronic or acute conditions like stroke, heart failure, myocardial infarction and pneumonia remains a significant challenge for improving the outcomes and decreasing the cost... more
The measurement of performance of Internet Protocol IP network can be done by Transmission Control Protocol TCP because it guarantees send data from one end of the connection actually gets to the other end and in the same order it was... more
We present a new algorithm (SATCHMO) that simultaneously estimates a tree and generates a set of multiple sequence alignments given a set of protein sequences. Alignments are constructed for each node in the tree. These alignments predict... more
DNA methylation has emerged as promising epigenetic markers for disease diagnosis. Both the differential mean (DM) and differential variability (DV) in methylation have been shown to contribute to transcriptional aberration and disease... more
Biomedical text mining and other automated techniques are beginning to achieve performance which suggests that they could be applied to aid database curators. However, few studies have evaluated how these systems might work in practice.... more
The accuracy of phylogenetic inference was examined in simulated data sets up to nearly 10,000 taxa, the size of the largest set of homologous genes in existing molecular sequence databases. Even with a simple search algorithm (maximum... more
General pedigrees can be encoded as Bayesian networks, where the common MPE query corresponds to finding the most likely haplotype configuration. Based on this, a strategy for grid parallelization of a state-of-the-art Branch and Bound... more
The measurement of performance of Internet Protocol IP network can be done by Transmission Control Protocol TCP because it guarantees send data from one end of the connection actually gets to the other end and in the same order it was... more
Rapid increases in e-cigarette use and potential exposure to harmful byproducts have shifted public health focus to e-cigarettes as a possible drug of abuse. Effective surveillance of use and prevalence would allow appropriate regulatory... more
Bayesian network structure learning is a useful tool for elucidation of regulatory structures of biomolecular pathways. The approach however is limited by its acyclicity constraint, a problematic one in the cycle-containing biological... more
Identifying positively selected amino acid sites is an important approach for making inference about the function of proteins; an amino acid site that is undergoing positive selection is likely to play a key role in the function of the... more
With the booming of new technologies, biomedical science has transformed into digitalized, data intensive science. Massive amount of data need to be analyzed and interpreted, demand a complete pipeline to train next generation data... more
The DNA-binding domain (DBD) structure of a regulatory transcription factor (TF) is important in determining its DNA sequence specificity, but it is unclear whether a relationship exists between DBD structure and general TF biological... more
Rapid increases in e-cigarette use and potential exposure to harmful byproducts have shifted public health focus to e-cigarettes as a possible drug of abuse. Effective surveillance of use and prevalence would allow appropriate regulatory... more
We propose a novel strategy for discovering motifs from gene expression data. The gene expression data in our experiments comes from DNA Microarray analysis of the bacterium E. coli in response to recovery from nutrient starvation. We... more
There has been much work devoted to the mapping, alignment, and linking of ontologies (MALO), but little has been published about how to evaluate systems that do this. A fault model for conducting fine-grained evaluations of MALO systems... more
Suppose that a biologist wishes to study some local property P of genetic sequences. If he can design (with a computer scientist) an algorithm C which efficiently compresses parts of the sequence which satisfy P, then our algorithm... more