Hydrocarbon Degradation and Enzyme Activities of Cold-Adapted Bacteria and Yeasts
Hydrocarbon Degradation and Enzyme Activities of Cold-Adapted Bacteria and Yeasts
Hydrocarbon Degradation and Enzyme Activities of Cold-Adapted Bacteria and Yeasts
DOI 10.1007/s00792-003-0347-2
O R I GI N A L P A P E R
Received: 1 February 2003 / Accepted: 27 June 2003 / Published online: 26 August 2003
Springer-Verlag 2003
Abstract The potential of 89 culturable cold-adapted degrading strains produced catechol 1,2 dioxygenase
isolates from uncontaminated habitats, including 61 activity.
bacterial and 28 yeast strains, to utilize representative
fractions of petroleum hydrocarbons (n-alkanes, Keywords Bacteria Æ Biodegradation Æ Cold-adapted Æ
monoaromatic and polycyclic aromatic hydrocarbons) Enzymes Æ Hydrocarbons Æ Phenol Æ Psychrophilic Æ
for growth and to produce various enzymes at 10C Yeasts
was investigated. The efficiency of bacterial and yeast
strains was compared. The growth temperature range
of the yeast strains was significantly smaller than that
of the bacterial strains. Sixty percent of the yeasts but Introduction
only 8% of the bacteria could be classified as true
psychrophiles, showing no growth above 20C. A high The potential of hydrocarbon-degrading microorgan-
percentage (89%) of the yeast strains showed lipase isms has led to the development of bioremediation
activity. More than one-third of the 61 bacterial techniques for contaminated soil and water (Dua et al.
strains produced amylase, b-lactamase, b-galactosidase 2002). Cold-adapted indigenous microorganisms play a
or lipase; more than two-thirds were protease pro- significant role in the in-situ biodegradation of hydro-
ducers. Only 6% of the bacterial strains but 79% of carbons in cold environments, where temperatures often
the yeast strains utilized n-hexadecane for growth; coincide with their growth temperature range. The aer-
13% of the bacterial strains and 21–32% of the yeast obic biodegradation of many components of petroleum
strains utilized phenol, phenanthrene or anthracene for hydrocarbons, including n-alkanes, aromatic and poly-
growth. Only four yeast strains but none of the bac- clic aromatic hydrocarbons (PAHs), at low temperatures
terial strains could grow with all hydrocarbons tested. has been reported in arctic, alpine and antarctic envi-
The biodegradation of phenol was investigated in fed- ronments (for a review, see Margesin and Schinner
batch cultures at 10C. Three yeast strains degraded 2001).
phenol concentrations as high as 10 mM (one strain) A wide variety of bacteria, fungi and algae have the
or 12.5 mM (two strains). Of eight bacterial strains, ability to metabolize aliphatic and aromatic hydrocar-
two strains degraded up to 10 mM phenol. The opti- bons (Alexander 1999). A large number of degradative
mum temperature for phenol degradation was 20C cold-tolerant bacteria have been identified, including
for all eight bacterial strains and for two yeast strains. representatives of heterotrophic aerobic Gram-negative
Biodegradation by five yeast strains was optimal and Gram-positive genera (Whyte et al. 1998; Yakimov
at 10C and faster at 1C than at 20C. All phenol- et al. 1999; Aislabie et al. 2000; Bej et al. 2000;
Baraniecki et al. 2002). Filamentous fungi are known for
their potential to degrade PAHs (Cerniglia 1992;
Communicated by K. Horikoshi Gramss et al. 1999). There is, however, little information
about the hydrocarbon-degradative potential of yeasts.
R. Margesin (&) Æ S. Gander Æ G. Zacke Æ F. Schinner
Institute of Microbiology, University of Innsbruck, Culturable cold-adapted yeasts have been isolated from
Technikerstrasse 25, 6020 Innsbruck, Austria oil-contaminated antarctic (Aislabie et al. 2001) and
E-mail: rosa.margesin@uibk.ac.at alpine soils (Margesin and Schinner 1997a), and from
Fax: +43-512-5072929 glacier cryoconite (Margesin et al. 2002).
A. M. Gounot Cold-adapted microorganisms are a potentially
University Claude Bernard Lyon 1, Villeurbanne, France exploitable source for cold-active enzymes (Gerday et al.
452
2000; Margesin 2002). Screenings for cold-active enzyme Screening for the microbial utilization of hydrocarbons
producers have been mainly focused on bacteria, while for growth
yeasts have been rarely considered (Birgisson et al. All 89 isolates were screened for their ability to utilize aerobically
2003). aliphatic and aromatic hydrocarbons in liquid media for growth.
It was the objective of this study to investigate the Inoculated medium without hydrocarbons, as well as sterile
potential of 89 culturable cold-adapted isolates to utilize hydrocarbon-containing medium, served as negative controls.
Growth was determined spectrophotometrically at 600 nm. Cul-
aerobically representative fractions of petroleum tures with an OD(600 nm)>0.2 were scored as positive for growth
hydrocarbons (n-alkanes, aromatic hydrocarbons, (Bej et al. 2000). Two to three replicates were used for all experi-
PAHs) for growth, and to produce various enzymes at ments and the mean values obtained are reported. The standard
low temperatures. The efficiency of bacterial and yeast deviations obtained were £10%.
strains and their growth temperature ranges were com-
pared. The biodegradation of phenol was characterized
n-alkanes (n-dodecane, n-hexadecane)
by determining the effect of temperature and the phenol
concentration on biodegradation and by determining the The screening was performed in 100-ml Erlenmeyer flasks
presence of catechol dioxygenases. containing 10 ml mineral medium. The medium was contami-
nated with n-hexadecane or n-dodecane (99% purity, 1 g l)1;
corresponding to 4.4 mM hexadecane and 5.9 mM dodecane) and
inoculated with 250 ll of a dense suspension of microbial cells (pre-
Materials and methods grown on R2A agar plates at 10C) in 0.9% NaCl. After an
incubation period of 14–21 days at 10C, growth was determined.
Strains The residual hydrocarbon concentration was quantified by infra-
red-spectroscopy after extraction with trichoro-trifluoro-ethane
(McLean et al. 1995).
Eighty-nine isolates, 61 bacterial and 28 yeast strains, were tested.
These strains were isolated on complex medium as described from
three alpine glacier cryoconite samples (Margesin et al. 2002) and
various alpine, Sibirian and antarctic cold environments, such as Aromatic hydrocarbons (phenol)
ice caves, continental ice and mud in the thawing zone at the foot of
glaciers. To distinguish between bacterial and yeast cells, the effect The screening was done in 100-ml Erlenmeyer flasks containing
of cycloheximide (inhibitor of fungal growth) on growth was 10 ml mineral medium. The medium was contaminated with
determined. Strains were grown on R2A agar plates containing 2.5 mM (235 mg l)1) phenol (99.5% purity) and inoculated with
400 lg cycloheximide ml)1 at 10C for 14 days. Phenol-degrading 250 ll of a dense suspension of microbial cells (pre-grown on R2A
strains were identified by Margesin et al. (2002) and by DSMZ agar plates at 10C) in 0.9% NaCl. After an incubation period of
(German Culture Collection of Microorganisms, Braunschweig, 7 days at 10C, growth was determined. The residual phenol con-
Germany). centration was determined according to Bastos et al. (2000a) by
measuring the optical density at 270 nm in the culture supernatants
using a calibration curve (0–1.4 mM phenol) prepared in mineral
medium.
Media
Effect of temperature on phenol biodegradation percentage (89%) of the yeast strains showed lipase
activity, but none of them produced b-galactosidase or
Phenol-degrading strains were cultivated in phenol-containing
mineral medium at 1, 10 and 20C (15C for strain AG17, which pectolytic enzymes. More than one-third of the 61 bac-
cannot grow at 20C) and 180 rpm. Growth and the residual terial strains produced amylase, b-lactamase, b-galac-
phenol concentration were monitored up to an incubation time of tosidase or lipase; more than two-thirds were protease
16 days. producers (Table 1).
Table 1 Potential of 61
bacterial (=100%) and 28 yeast Enzyme activity Bacteria Yeasts Total
(=100%) strains to produce (100%=61) (100%=28) (100%=89)
enzymes at 10C
No. % No. % No. %
Table 2 Potential of 61 bacterial (=100%) and 28 yeast (=100%) bacterial strains could grow with all hydrocarbons; all of
strains to utilize hydrocarbons for growth at 10C them were isolated from alpine glacier cryoconite and
[OD(600 nm)>0.2] did not grow at temperatures above 20C.
Hydrocarbons Bacteria Yeasts Total
(100%=61) (100%=28) (100%=89)
Biodegradation of phenol
No. % No. % No. %
Table 3 Characterization of phenol-degrading cold-adapted yeasts and bacteria (Tmax maximum temperature at which growth in R2A medium occurred; C1,2D presence of catechol 1,2 Of the eight bacterial strains, six strains (Pseudomo-
[Phenolmax] (mM)
dioxygenase; C2,3D presence of catechol 2,3 dioxygenase;+ positive reaction; (+) weak reaction, ) negative reaction;[Phenolmax] highest phenol concentration degraded at 10C) nas spp.) could not degrade phenol concentrations
higher than 2.5 mM, while two strains (Arthrobacter
spp.) degraded 10 mM phenol within 7 days (Table 3).
12.5
12.5
2.5
2.5
2.5
2.5
2.5
2.5
10
10
10
5
5
5
5
Effect of temperature on phenol biodegradation
C2,3D
(+)
(+)
(+)
(+)
(+)
+
+
+
20C for all eight bacterial strains and for two yeast
)
)
)
)
)
)
)
strains. Five yeast strains, however, had an optimum
C1,2D
(+)
1C than at 20C or 15C. In one case, biodegradation
+
+
+
+
+
+
+
+
+
+
+
+
+
+
performance at 1C and 10C was comparable (Table 3).
Biomass formation (OD) was always greater at 10C
on biomass formation (OD)
(Table 3).
10>1>>20
10>1>15
10>20=1
1>10>20
10>20>1
1>10>20
1>10>20
10>1=20
10>1=20
1>10>20
10>20>1
10>1>20
10>1>20
C1,2D was detected with all strains tested, indicating the
oxidation of catechol by the ortho type of ring cleavage.
Some strains also produced C2,3D; these strains are able
on phenol degradation
10>1>>15
10>1>>20
1=10>>20
20>10>>1
20>10>1
10>1>20
10>1>20
20>10>1
20>10>1
20>10>1
20>10>1
20>10>1
20>10>1
20>10>1
20>10>1
Discussion
Effect of
15
20
20
20
20
25
25
25
30
25
25
25
25
Arthrobacter sp.
Arthrobacter sp.
Rhodotorula sp.
Identification
(A)
(A)
(A)
(A)
(A)
(A)
glacier cryoconite
glacier cryoconite
glacier cryoconite
glacier cryoconite
glacier cryoconite
glacier cryoconite
AG 17
AG 30
AG 31
Yeasts
Strain
A 10
A 11
A 19
A 43
C 16
C 31
C 32
C 34
B 48
as biocatalysts (Alkasrawi et al. 1999; Trosok et al. Dua M, Singh A, Sethunathan N, Johri AK (2002) Biotechnology
2002). and bioremediation: successes and limitations. Appl Microbiol
Biotechnol 59:143–152
In conclusion, cold-adapted microorganisms show a Foght JM, Fedorak PM, Westlake DWS (1990) Mineralization of
great potential for the low-temperature biodegradation (14C)hexadecane and (14C)phenanthrene in crude oil: specificity
of hydrocarbons. The contribution of yeasts to the among bacterial isolates. Can J Microbiol 36:169–175
biodegradation of hydrocarbons in the environment and Gerday C, Aittaleb M, Bentahir M, Chessa J-P, Claverie P, Collins
T, D’Amico S, Dumont J, Garsoux G, Georlette D, Hoyoux A,
as potentially exploitable enzyme producers may be Lonhienne T, Meuwis M-A, Feller G (2000) Cold-adapted en-
much more important than currently expected, consid- zymes: from fundamentals to biotechnology. Trends Biotechnol
ering their great metabolic versatility. 18:103–107
Gounot AM (1999) Microbial life in permanently cold soils. In:
Margesin R, Schinner F (eds) Cold-adapted organisms.
Springer, Berlin Heidelberg New York, pp 3–15
References Gramss G, Voight KD, Kirsche B (1999) Degradation of polycyclic
aromatic hydrocarbons with three to seven aromatic rings by
Aislabie J, McLeod M, Fraser R (1998) Potential for biodegrada- higher fungi in sterile and unsterile soils. Biodegradation 10:51–
tion of hydrocarbons in soil from the Ross Dependency, Ant- 62
arctica. Appl Microbiol Biotechnol 49:210–214 Guieysse B, Wikström P, Forsman M, Mattiasson B (2001) Bio-
Aislabie J, Foght J, Saul D (2000) Aromatic hydrocarbon- monitoring of continuous microbial community adaptation
degrading bacteria from soil near Scott base, Antarctica. Polar towards more efficient phenol degradation in a fed-batch bio-
Biol 23:183–188 reactor. Appl Microbiol Biotechnol 56:780–787
Aislabie J, Fraser R, Duncan S, Farrell RL (2001) Effects of oil Hinteregger C, Leitner R, Loidl M, Ferschl A, Streichsbier F (1992)
spills on microbial heterotrophs in Antarctic soils. Polar Biol Degradation of phenol and phenolic compounds by Pseudo-
24:308–313 monas putida EFII. Appl Microbiol Biotechnol 37:252–259
Alexander (1999) Biodegradation and bioremediation, 2nd edn. Kotturi G, Robinson CW, Inniss WE (1991) Phenol degradation
Academic, London by a psychrotrophic strain of Pseudomonas putida. Appl
Alkasrawi M, Nandakumar R, Margesin R, Schinner F, Mattias- Microbiol Biotechnol 34:539–543
son B (1999) A microbial biosensor based on Yarrowia lipoly- Krug M, Ziegler H, Straube G (1985) Degradation of phenolic
tica for the off-line determination of middle-chain alkanes. compounds by the yeast Candida tropicalis HP15. J Basic
Biosensors Bioelectron 14:723–727 Microbiol 2:103–110
Babu KS, Ajithkumar, Kunhi AAM (1995) Mineralization of Li JK, Humphrey AE (1989) Kinetic and fluorimetric behaviour of
phenol and its derivatives by Pseudomonas sp.strain cp4. World a phenol fermentation. Biotechnol Lett 11:177–182
J Microbiol Biotechnol 11:661–664 Margesin R (2002) Cold-active enzymes as new tools in biotech-
Baraniecki CA, Aislabie J, Foght JM (2002) Characterization of nology. In: Gerday C (ed) Extremophiles. Encyclopedia of life
Sphingomonas sp. Ant 17, an aromatic hydrocarbon-degrading support systems. EOLSS, Oxford (in press)
bacterium isolated from Antarctic soil. Microb Ecol 43:44–54 Margesin R, Schinner F (1997a) Effect of temperature on oil deg-
Bastos AER, Tornisielo VL, Nozawa SR, Trevors JT, Rossi A radation by a psychrotrophic yeast in liquid culture and in soil.
(2000a) Phenol metabolism by two microorganisms isolated FEMS Microbiol Ecol 24:243–249
from Amazonian forest soil samples. J Ind Microbiol Biotech- Margesin R, Schinner F (1997b) Bioremediation of diesel-oil con-
nol 24:403–409 taminated alpine soils at low temperatures. Appl Microbiol
Bastos AER, Moon DH, Rossi A, Trevors J, Tsai SM (2000b) Salt- Biotechnol 47:462–468
tolerant phenol-degrading microorganisms isolated from Margesin R, Schinner F (1998) Oil biodegradation potential in
Amazonian soil samples. Arch Microbiol 174:346–352 alpine habitats. Arct Alp Res 30:262–265
Bej AK, Saul D, Aislabie J (2000) Cold-tolerant alkane-degrading Margesin R, Schinner F (2001) Biodegradation and bioremediation
Rhodococcus species from Antarctica. Polar Biol 23:100–105 of hydrocarbons in extreme environments. Appl Microbiol
Birger A, Krauss G, Kiesel B, Dermietzel J, Gläßer W (1997) Biotechnol 56:650–663
Abbaupotential für aliphatische und aromatische Kohlenwass- Margesin R, Zacke G, Schinner F (2002) Characterization of het-
erstoffe in bakteriellen und heterotrophen Communities differ- erotrophic microorganisms in alpine glacier cryoconite. Arct
enter Grundwasser-Biozönosen. In: Kreysa G, Wiesner J (eds) Antarct Alp Res 34:88–93
Möglichkeiten und Grenzen der Reinigung kontaminierter McLean G, Röhler J, Buchser W (1995) Biodegradability of two-
Gewässer. Dechema, Frankfurt, pp 571–581 stroke cycle outboard engine oils in water. Approved test
Birgisson H, Delgado O, Garcia Arroyo L, Hatti-Kaul R, method CEC L-33-A-93, Brussels
Mattiasson B (2003) Cold-adapted yeasts as producers of cold- Morgan JAW, Winstanley C, Pickup RW, Jones JG, Saunders JR
active polygalacturonases. Extremophiles 7:185–193 (1989) Direct phenotypic and genotypic detection of a re-
Bowman JP, McCammon SA, Brown MV, Nichols DS, McMeekin combinant pseudomonad population released into lake water.
TA (1997) Diversity and association of psychrophilic bacteria in Appl Environ Microbiol 55:2537–2544
Antarctic sea ice. Appl Environ Microbiol 63:3068–3078 Neidle EL, Ornston LN (1986) Cloning and expression of Acinet-
Burden DW, Eveleight DE (1990) Yeasts—diverse substrates and obacter calcoaceticus catechol 1,2-dioxygenase structural gene
products. In: Spencer JFT, Spencer DM (eds) Yeast technology. cat A in Escherichia coli. J Bacteriol 168:815–820
Springer, Berlin Heidelberg New York, pp 199–227 Olivera NL, Esteves JL, Commendatore MG (1997) Alkane bio-
Cerniglia CE (1992) Biodegradation of polycyclic aromatic degradation by a microbial community from contaminated
hydrocarbons. Biodegradation 3:351–368 sediments in Patagonia, Argentina. Int Biodet Biodegrad 40:75–
Chablain PA, Philippe G, Groboillot A, Truffaut N, Guespin- 79
Michel JF (1997) Isolation of a soil psychrotrophic toluene- Santos VL, Linardi VR (2001) Phenol degradation by yeasts iso-
degrading Pseudomonas strain: influence of temperature on the lated from industrial effluents. J Gen Appl Microbiol 47:213–
growth characteristics on different substrates. Res Microbiol 221
148:153–161 Sotsky JB, Atlas RM (1994) Frequency of genes in aromatic and
Delille D, Perret E (1989) Influence of temperature on the growth aliphatic hydrocarbon biodegradation pathways within bacte-
potential of southern polar marine bacteria. Microb Ecol rial populations from Alaskan sediments. Can J Microbiol
18:117–123 40:981–985
458
Trosok SP, Luong JHT, Juck DF, Driscoll BT (2002) Character- low temperatures by a psychrotrophic Rhodococcus sp. Appl
ization of two novel yeast strains used in mediated biosensors Environ Microbiol 64:2578–2584
for wastewater. Can J Microbiol 48:418–426 Yakimov MM, Giuliano L, Bruni V, Scarfi S, Golyshin PN (1999)
Whyte LG, Hawari J, Zhou E, Bourbonnière L, Inniss WE, Greer Characterization of Antarctic hydrocarbon-degrading bacteria
CW (1998) Biodegradation of variable-chain-length alkanes at capable of producing bioemulsifiers. Microbiologica 22:249–256