Eric Guiry

The short‐tailed albatross (Phoebastria albatrus) is a threatened seabird whose present‐day range encompasses much of the North Pacific. Within this species, there are two genetic clades (Clades 1 and 2) that have distinctive morphologies and foraging ecologies. Due to a global population collapse in the late 19th and early 20th centuries, the frequency of these clades among the short‐tailed albatross population that historically foraged off British Columbia, Canada, is unclear. To document the species' historical genetic structure in British Columbia, we applied ancient DNA (aDNA) analysis to 51 archaeological short‐tailed albatross specimens from the Yuquot site (Borden site number: DjSp‐1) that span the past four millennia. We obtained a 141 bp cytochrome b sequence from 43 of the 51 (84.3%) analyzed specimens. Analyses of these sequences indicate 40 of the specimens belong to Clade 1, while 2 belong to Clade 2. We also identified a single specimen with a novel cytochrome b haplotype. Our results indicate that during the past four millennia most of the short‐tailed albatrosses foraging near Yuquot belonged to Clade 1, while individuals from other lineages made more limited use of the area. Comparisons with the results of previous aDNA analyses of archaeological albatrosses from Japanese sites suggest the distribution of Clades 1 and 2 differed. While both albatross clades foraged extensively in the Northwest Pacific, Clade 1 albatrosses appear to have foraged along the west coast of Vancouver Island to a greater extent. Due to their differing distributions, these clades may be exposed to different threats.

Research on the evolution of dog foraging and diet has largely focused on scavenging during their initial domestication and genetic adaptations to starch-rich food environments following the advent of agriculture. The Siberian archaeological record evidences other critical shifts in dog foraging and diet that likely characterize Holocene dogs globally. By the Middle Holocene, body size reconstruction for Siberia dogs indicates that most were far smaller than Pleistocene wolves. This contributed to dogs’ tendencies to scavenge, feed on small prey, and reduce social foraging. Stable carbon and nitrogen isotope analysis of Siberian dogs reveals that their diets were more diverse than those of Pleistocene wolves. This included habitual consumption of marine and freshwater foods by the Middle Holocene and reliance on C 4 foods by the Late Holocene. Feeding on such foods and anthropogenic waste increased dogs’ exposure to microbes, affected their gut microbiomes, and shaped long-term dog ...

Sulfur isotope (δ34S) analyses are an important archaeological and ecological tool for understanding human and animal migration and diet, but δ34S can be difficult to interpret, particularly in archaeological human-mobility studies, when measured isotope compositions are strongly 34S-depleted relative to regional baselines. Sulfides, which accumulate under anoxic conditions and have distinctively low δ34S, are potentially key for understanding this but are often overlooked in studies of vertebrate δ34S. We analyze an ecologically wide range of archaeological taxa to build an interpretive framework for understanding the impact of sulfide-influenced δ34S on vertebrate consumers. Results provide the first demonstration that δ34S of higher-level consumers can be heavily impacted by freshwater wetland resource use. This source of δ34S variation is significant because it is linked to a globally distributed habitat and occurs at the bottom of the δ34S spectrum, which, for archaeologists, i...

The passenger pigeon (Ectopistes migratorius) was once the most abundant bird species in North America. Flocks of these birds witnessed in the early 19th century were so vast that they were said to darken the sky for days as they passed. Early syntheses of passenger pigeon remains in archaeological contexts in the eastern United States, in contrast, found them to be relatively rare in relation to other fowl, leading to the suggestion that the colonial‐era hyper‐abundance of passenger pigeons was a post‐European‐contact phenomenon resulting from contact‐induced demographic and ecological changes. In this paper, we provide new insights into passenger pigeon historical ecology through a synthesis and GIS‐based analysis of zooarchaeological data on skeletal remains from 157 Late Woodland (ca. 900–1650 CE) sites in Ontario, Canada. Our results reveal that passenger pigeon bones are common, and often abundant, in Late Woodland archaeological assemblages in Ontario, which speaks to the spe...

Resource depression and garden hunting are major topics of archaeological interest, with important implications for understanding cultural and environmental change. Garden hunting is difficult to study using traditional zooarchaeological approaches, but isotopic analyses of animals may provide a marker for where and when people exploited nondomesticated animals that fed on agricultural resources. To realize the full potential of isotopic approaches for reconstructing garden hunting practices—and the impacts of agriculture on past nondomesticated animal populations more broadly—a wider range of species, encompassing many “ecological perspectives,” is needed. We use bone-collagen isotopic compositions of animals (n = 643, 23 taxa, 39 sites) associated with the Late Woodland (~AD 900−1650) in what is now southern Ontario to test hypotheses about the extent to which animals used maize, an isotopically distinctive plant central to subsistence practices of Iroquoian-speaking peoples acros...

Despite the longstanding significance of North America's Great Lakes, little is known about their preindustrial ecology. Here, we report on when and how humans first became a main driver of Lake Ontario's nutrient dynamics. Nitrogen isotope analyses of archaeological fish show that, prior to the 1830s, Lake Ontario's nitrogen cycle and the trophic ecology of its top predators had remained stable for at least 800 yrs, despite Indigenous and historical European agricultural land management across the region. An abrupt shift in the nitrogen isotope composition of Lake Ontario's fish community is evident in the early to mid‐19th century and reflects the initiation of industrial‐scale forest clearance. These data show how the nitrogenous nutrient regimes of even the world's largest freshwater ecosystems can be highly sensitive to short‐term watershed forest cover disturbances and indicate a profound shift in the relationship between humans and their environment.

Dogs were present in the Americas before the arrival of European colonists, but the origin and fate of these precontact dogs are largely unknown. We sequenced 71 mitochondrial and 7 nuclear genomes from ancient North American and Siberian dogs from time frames spanning ~9000 years. Our analysis indicates that American dogs were not derived from North American wolves. Instead, American dogs form a monophyletic lineage that likely originated in Siberia and dispersed into the Americas alongside people. After the arrival of Europeans, native American dogs almost completely disappeared, leaving a minimal genetic legacy in modern dog populations. The closest detectable extant lineage to precontact American dogs is the canine transmissible venereal tumor, a contagious cancer clone derived from an individual dog that lived up to 8000 years ago.

Historical zooarchaeologists have made significant contributions to key questions about the social, economic, and nutritional dimensions of domestic animal use in North American colonial contexts; however, techniques commonly employed in faunal analyses do not offer a means of assessing many important aspects of how animals were husbanded and traded. We apply isotopic analyses to faunal remains from archaeological sites to assess the social and economic importance of meat trade and consumption of local and foreign animal products in northeastern North America. Stable carbon and nitrogen isotope analyses of 310 cattle and pigs from 18 rural and urban archaeological sites in Upper Canada (present-day southern Ontario, Canada; ca. A.D. 1790–1890) are compared with livestock from contemporary American sources to quantify the importance of meat from different origins at rural and higher- and lower-status urban contexts. Results show significant differences between urban and rural househo...

Lake Ontario once supported a large complex of Atlantic Salmon (Salmo salar) populations that became extinct prior to scientific study. Since the 1860s, research efforts to conserve and reintroduce a sustainable population of Atlantic Salmon have focused on determining whether Lake Ontario’s original salmon populations had migrated to the Atlantic Ocean as part of their lifecycle (anadromy), stayed in the lake year-round (potamodromy), or both. We used stable carbon, nitrogen, and sulfur isotope analyses of archaeological bones and historical museum-archived salmon scales to show that the original salmon populations from Lake Ontario completed their entire lifecycle without migrating to the Atlantic Ocean. With a time depth of more than 500 years, our findings provide a unique baseline with significant potential for informing modern restocking and conservation efforts.

RationaleFish bone collagen isotopic measurements are increasingly important in palaeodietary and paleoenvironmental studies yet differences in the chemical and physical properties of fish relative to other vertebrate bones are rarely considered. Lipid content in fish bone, which can exceed 50%, may underlie the poor collagen integrity criteria typically observed in archaeological studies.MethodsWe compare stable carbon and nitrogen isotopic and elemental compositions of bone collagen prepared using four different methods from a wide range of modern fish species to: (1) assess the extent to which lipid content influences bone collagen δ13C and δ15N values, and (2) evaluate the relative efficacy of chemical (2:1 chloroform/methanol) and physical (30 kDa ultrafilters) methods for removing lipids from bones.ResultsLower δ13C values were observed when the lipid content exceeded 5% of the initial bone mass. The lipid content did not influence the δ15N values. 30 kDa ultrafiltration, a co...

A 19th‐century dog burial uncovered from a historical homelot in Toronto, Canada, provided a unique opportunity to reconstruct the individual's osteobiography. Of particular interest are the dog's very large size and a suite of skeletal pathologies. Recovery of a nearly complete skeleton combined with the use of X‐rays and micro‐computed tomography (micro‐CT) allowed for a discriminating differential diagnoses. Stable isotope analyses were applied to investigate questions of diet. Results reveal an individual who suffered greatly from disease towards the end of his life and hint at its owners attitudes towards dogs. The interdisciplinary approach applied to this case study highlights the potential information obtainable from pet burials. We argue that better analyses and reporting of pet burials will help address research questions targeting broader themes related to human–animal relationships. Copyright © 2015 John Wiley & Sons, Ltd.

Analysis of individual animal bodies can provide numerous useful insights in archeology, including how humans provisioned such animals, which in turn informs on a variety of other past behaviors such as human dietary patterns. In this study, we conducted stable carbon (δ13C) and nitrogen (δ15N) isotope analysis of collagen and keratin from four types of tissues from a dog burial at the Ust’-Polui site in the Iamal region of Arctic Russia. Ust’-Polui is an Iron Age site located on the Lower Ob River, a major northern fishery characterized by extreme seasonal shifts in fish presence. During a 6-month period stretching over the coldest months of the year, fish are nearly entirely absent in the Lower Ob River. Despite this, the stable isotope compositions of the dog’s bone and dentine collagen and hair and nail keratin all indicate a monotonous diet focusing on local fish. This pattern indicates the dog was provisioned year-round with fish. This was likely accomplished by mass harvestin...

Domestic animals, particularly cattle and pigs, were a cornerstone of European colonial projects around the globe (ca. 1500-1900 AD). Livestock husbandry and trade provided not only a source of food, labour, and raw materials for daily life, but also held symbolic significance as a factor in establishing colonial group identity. This dissertation uses stable isotope analyses to reconstruct domestic animal trade and husbandry practices associated with the global expansion of European colonial activities into the New World between the seventeenth and nineteenth centuries. Research has been divided into three standalone projects, each designed to make a significant contribution to the current literature in the field of isotopic-zooarchaeological analyses. These projects are unified through a common theme of exploring the social roles of animal husbandry and trade and, together, provide a cohesive demonstration of how historical and isotopic faunal records can be integrated to advance a...

Fisheries encompass complex interplays between social, economic, and environmental factors, but limitations on historical fisheries data can hamper efforts to identify and contextualize the long-term spatiotemporal patterns that shape them. We integrate 2500 years of stable isotope (δ34S, δ13C, and δ15N) and zooarchaeological evidence from Gulf of Mexico fisheries to assess cultural, demographic, and technological changes affecting sheepshead (Archosargus probatocephalus) populations and fishing practices in Louisiana, USA. Concurrent with human population growth, average sizes of sheepshead caught decreased from the 1720s to 1830s. The size of fish caught after the 1830s increased to pre-1720 levels at the same time that isotopic compositions of fish bone collagen show that fish were being caught from a more diverse range of ecosystems, including distant seagrass beds. Our findings provide the first evidence for large-scale depressions of historical sheepshead populations and the p...

Abstract This study investigates the nature of diet in a predominantly Late Medieval Gaelic Irish skeletal population and explores whether any sex-based and/or age differences were evident in the population. A smaller sub-sample was also examined to determine whether there was any evidence for dietary change over time between the Early Medieval (c.700–c.1200) and Late Medieval periods (c.1200–c.1600). The dietary evidence was derived using a multiproxy approach that combined information from dental palaeopathology (n = 356 adults) and analysis of carbon (δ13C) and nitrogen (δ15N) stable isotope compositions (n = 72 individuals). A higher proportion of females were affected by carious lesions when compared to males. This is possibly suggestive of differing levels of carbohydrate consumption between the sexes, although other factors such as eating habits, and genetic and physiological differences may also have influenced the patterns in the data. The isotopic values indicated that both sexes were consuming similar amounts and types (marine vs. terrestrial) of dietary protein. Elevated δ15N indicated breastfeeding among the youngest in society but, once children had been weaned, the dietary protein was isotopically similar across the different age categories. Among a smaller radiocarbon-dated sub-sample (n = 37), there was an increase in both the percentage of individuals affected by dental caries and the percentage of teeth affected by dental caries between the Early Medieval and Late Medieval periods. This increase may indicate a greater inclusion of plant-based carbohydrates, such as cereals, in the diet over time, although it may also reflect the younger age distribution of the Early Medieval sample. Interpretations for each of these patterns are discussed with reference to the historical and archaeological evidence. Multiproxy palaeodietary studies for Medieval Ireland are limited and this is the first substantial study of evidence derived from both dental palaeopathology and stable isotope analysis.

Resource depression and garden hunting are major topics of archaeological interest, with important implications for understanding cultural and environmental change. Garden hunting is difficult to study using traditional zooarchaeological approaches, but isotopic analyses of animals may provide a marker for where and when people exploited nondomesticated animals that fed on agricultural resources. To realize the full potential of isotopic approaches for reconstructing garden hunting practices—and the impacts of agriculture on past nondomesticated animal populations more broadly—a wider range of species, encompassing many “ecological perspectives,” is needed. We use bone-collagen isotopic compositions of animals (n = 643, 23 taxa, 39 sites) associated with the Late Woodland (~AD 900−1650) in what is now southern Ontario to test hypotheses about the extent to which animals used maize, an isotopically distinctive plant central to subsistence practices of Iroquoian-speaking peoples across the region. Results show that although some taxa—particularly those that may have been hard to control—had substantial access to maize, most did not, regardless of the animal resource requirements of local populations. Our findings suggest that this isotopic approach to detecting garden hunting will be more successful when applied to smaller-scale societies.

Analysis of individual animal bodies can provide numerous useful insights in archeology, including how humans provisioned such animals, which in turn informs on a variety of other past behaviors such as human dietary patterns. In this study, we conducted stable carbon (δ 13 C) and nitrogen (δ 15 N) isotope analysis of collagen and keratin from four types of tissues from a dog burial at the Ust'-Polui site in the Iamal region of Arctic Russia. Ust'-Polui is an Iron Age site located on the Lower Ob River, a major northern fishery characterized by extreme seasonal shifts in fish presence. During a 6-month period stretching over the coldest months of the year, fish are nearly entirely absent in the Lower Ob River. Despite this, the stable isotope compositions of the dog's bone and dentine collagen and hair and nail keratin all indicate a monotonous diet focusing on local fish. This pattern indicates the dog was provisioned year-round with fish. This was likely accomplished b...

Methods in Ecology and Evolution published by John Wiley & Sons Ltd on behalf of British Ecological Society Isotopic analyses of collagen, the main protein preserved in subfossil bone and tooth, has long provided a powerful tool for the reconstruction of ancient diets and environments. Although isotopic studies of contemporary ecosystems have typically focused on more accessible tissues (e.g. muscle, hair), there is growing interest in the potential for analyses of collagen because it is often available in hard tissue archives (e.g. scales, skin, bone, tooth), allowing for enhanced long-term retrospective studies. The quality of measurements of the stable carbon and nitrogen isotopic compositions of ancient samples is subject to robust and well-established criteria for detection of contaminants and diagenesis. Among these quality control (QC) criteria, the most widely utilized is the atomic C:N ratio (C:NAtomic), which for ancient samples has an acceptable range between 2.9 and 3.6. While this QC criterion was developed for ancient materials, it has increasingly being applied to collagen from modern tissues. Here, we use a large survey of published collagen amino acid compositions (n = 436) from 193 vertebrate species as well as recent experimental isotopic evidence from 413 modern collagen extracts to demonstrate that the C:NAtomic range used for ancient samples is not suitable for assessing collagen quality of modern and archived historical samples. For modern tissues, collagen C:NAtomic falling outside 3.00–3.30 for fish and 3.00–3.28 for mammals and birds can produce systematically skewed isotopic compositions and may lead to significant interpretative errors. These findings are followed by a review of protocols for improving C:NAtomic criteria for modern collagen extracts. Given the tremendous conservation and environmental policy-informing potential that retrospective isotopic analyses of collagen from contemporary and archived vertebrate tissues have for addressing pressing questions about long-term environmental conditions and species behaviours, it is critical that QC criteria tailored to modern tissues are established.

Sled dogs were an integral part of Labrador Inuit life from the initial expansion and settlement of northeastern Canada to the present day. Tasked with pulling sleds and assisting people with other subsistence activities in the winter, dogs required regular provisioning with protein and fat. In this paper, we conduct stable carbon and nitrogen isotope ratio analysis of the skeletal remains of dogs (n = 35) and wild fauna (n = 68) from sites located on the north and south coasts of Labrador to characterize dog provisioning between the 15th to early 19th centuries. In addition, we analyse bone (n = 20) and dentine (n = 4) collagen from dogs from Double Mer Point, a communal house site in Hamilton Inlet to investigate how dog diets intersected with Inuit subsistence and trade activities at a local level. We find that dog diets were largely composed of marine mammal protein, but that dogs on the north coast consumed more caribou and fish relative to dogs from the central and south coast...

The decline of passenger pigeons (Ectopistes migratorius) during the late nineteenth century continues to draw substantial public and scientific attention as perhaps the most (in-)famous extinction event in North America’s recent history. While humans undeniably caused the extinction, the relative importance of indirect (habitat destruction) versus direct (overhunting) impacts has remained a mystery, in part, due to a lack of scientific evidence for critical aspects of the species’ dietary ecology. One key factor in explaining why passenger pigeons went extinct is that their highly specialized diet and foraging strategy, focusing on mast (tree nuts), were no longer feasible as the forested habitats that they depended on became depleted by deforestation. We used stable isotope (d13C and d15N, n=94) and ancient DNA (n=9) analyses of archaeological specimens to demonstrate that, during the later Holocene, passenger pigeons had a substantial degree of dietary plasticity (including some ...

Changing social and economic practices had an important role for human adaptive strategies in colonial contexts and sometimes had profound consequences for emerging societies. This study uses insights from stable-isotope analyses, as well as other historical and archaeological evidence, to investigate the social and economic roles of French animal husbandry as an adaptive strategy for the settlers taking part in La Salle’s famous expedition (1684–1688) to colonize the mouth of the Mississippi River. Stable carbon- and nitrogen-isotope analyses of pig bones and other faunal remains from the shipwreck, La Belle, and associated Fort Saint Louis on the northern coast of the Gulf of Mexico are used to evaluate specific historical accounts of colonists’ animal-husbandry practices and show that a large swine population was sustained primarily on meat from local hunting activities. In this context it is argued that, although the substantial efforts involved in raising pigs mainly on other animal products seemingly makes little economic sense, there are social explanations for what initially appears to be irrational behavior. This study provides an example of how stable-isotope analyses of animal-husbandry practices can contribute to understanding social processes through historical archaeology.ExtractoLas cambiantes prácticas sociales y económicas desempeñaban un papel importante en las estrategias de adaptación humana en los contextos coloniales y a veces tenían profundas consecuencias para las sociedades emergentes. Este estudio utiliza revelaciones de análisis de isótopos estables, y otras evidencias históricas y arqueológicas, para investigar las funciones sociales y económicas de la cría francesa de animales como una estrategia de adaptación de los colonos que participaron en la famosa expedición de La Salle (1684 a 1688) para colonizar la desembocadura del río Mississippi. Se utilizan análisis de isótopos estables de carbono y de nitrógeno, de huesos de cerdos y de otros restos de fauna del naufragio La Belle y del asociado Fort Saint Louis en la costa norte del Golfo de México, para evaluar registros históricos específicos de las prácticas de cría de animales de los colonos y para demostrar que una gran población de cerdos se mantuvo principalmente con carne de las actividades de cacería locales. En este contexto, se argumenta que, si bien los considerables esfuerzos que implican el criar cerdos principalmente con otros productos de animales parecen tener poco sentido económico, existen explicaciones sociales para lo que inicialmente parece ser un comportamiento irracional. Este estudio proporciona un ejemplo de cómo los análisis de isótopos estables de las prácticas de cría de animales pueden contribuir a la comprensión de los procesos sociales mediante la arqueología histórica.RésuméL’évolution des pratiques sociales et économiques a fortement influencé les stratégies d’adaptation humaine dans les contextes coloniaux, ayant parfois des conséquences marquantes sur les sociétés émergentes. La présente étude se sert de données d’analyse d’isotopes stables, ainsi que d’autres preuves historiques et archéologiques, pour enquêter sur les rôles sociaux et économiques de l’élevage français des animaux à titre de stratégie d’adaptation des colons ayant participé à l’expédition de LaSalle (1684 à 1688) afin de coloniser l’embouchure du fleuve Mississippi. Des analyses d’isotopes du carbone et de l’azote provenant d’os de cochon et d’autres restes fauniques récupérés dans l’épave de La Belle et associés à Fort Saint Louis sur la côte nord du Golfe du Mexique, permettent d’évaluer des récits historiques précis des pratiques d’élevage des colons, et de démontrer qu’une vaste population porcine était principalement nourrie des produits de la chasse d’animaux locaux. Dans ce contexte, il est avancé que même si les importants efforts dirigés vers l’élevage porcin à partir, principalement, d’autres produits animaux étaient peu viables d’un point de vue économique, des explications sociales existent pour décrire un comportement à priori irrationnel. La présente étude offre un exemple de la façon dont l’analyse des isotopes stables de pratiques d’élevage animal peut contribuer à la compréhension de processus sociaux dans le cadre de l’archéologie historique.

Humans have always affected their ecosystems, but finding evidence for significant and lasting changes to preindustrial landscapes is rare. We report on human-caused changes to the nitrogen cycle in Ireland in the Bronze Age, associated with intensification of agriculture and animal husbandry that resulted in long-term changes to the nitrogen isotope values of animals (wild and domesticates) during the Holocene. Major changes to inputs and cycling of soil nitrogen occurred through deforestation, land clearance and management, and more intensive animal husbandry and cereal crop cultivation in the later Bronze Age; after this time, the Irish landscape took on its current form. Within the debate concerning the onset of the Anthropocene, our data suggest that human activity in Ireland was significant enough in the Bronze Age to have long-term impact, thereby marking a profound shift in the relationship between humans and their environment.