Emmanuel S Boss
University of Maine, School of Marine Sciences, Faculty Member
Measurements of optical properties have been used for decades to study particle distributions in the ocean. They are useful for estimating suspended mass concentration as well as particle-related properties such as size, composition,... more
Measurements of optical properties have been used for decades to study particle distributions in the ocean. They are useful for estimating suspended mass concentration as well as particle-related properties such as size, composition, packing (particle porosity or density), and settling velocity. Measurements of optical properties are, however, biased, as certain particles, because of their size, composition, shape, or packing, contribute to a specific property more than others. Here, we study this issue both theoretically and practically, and we examine different optical properties collected simultaneously in a bottom boundary layer to highlight the utility of such measurements. We show that the biases we are likely to encounter using different optical properties can aid our studies of suspended sediment. In particular, we investigate inferences of settling velocity from vertical profiles of optical measurements, finding that the effects of aggregation dynamics can seldom be ignored.
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Measuring the underwater light field is a key mission of the international Biogeochemical-Argo program. Since 2012, 0–250 dbar profiles of downwelling irradiance at 380, 412 and 490 nm besides photosynthetically available radiation (PAR)... more
Measuring the underwater light field is a key mission of the international Biogeochemical-Argo program. Since 2012, 0–250 dbar profiles of downwelling irradiance at 380, 412 and 490 nm besides photosynthetically available radiation (PAR) have been acquired across the globe every 1 to 10 days. The resulting unprecedented amount of radiometric data has been previously quality-controlled for real-time distribution and ocean optics applications, yet some issues affecting the accuracy of measurements at depth have been identified such as changes in sensor dark responsiveness to ambient temperature, with time and according to the material used to build the instrument components. Here, we propose a quality-control procedure to solve these sensor issues to make Argo radiometry data available for delayed-mode distribution, with associated error estimation. The presented protocol requires the acquisition of ancillary radiometric measurements at the 1000 dbar parking depth and night-time profi...
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The vertical distribution of irradiance in the ocean is a key input to quantify processes spanning from radiative warming, photosynthesis to photo-oxidation. Here we use a novel dataset of thousands local-noon downwelling irradiance at... more
The vertical distribution of irradiance in the ocean is a key input to quantify processes spanning from radiative warming, photosynthesis to photo-oxidation. Here we use a novel dataset of thousands local-noon downwelling irradiance at 490 nm (Ed(490)) and photosynthetically available radiation (PAR) profiles captured by 103 BGC-Argo floats spanning three years (from October 2012 to January 2016) in the world’s ocean, to evaluate several published algorithms and satellite products related to diffuse attenuation coefficient (Kd). Our results show: (1) MODIS-Aqua Kd(490) products derived from a blue-to-green algorithm and two semi-analytical algorithms show good consistency with the float-observed values, but the Chla-based one has overestimation in oligotrophic waters; (2) The Kd(PAR) model based on the Inherent Optical Properties (IOPs) performs well not only at sea-surface but also at depth, except for the oligotrophic waters where Kd(PAR) is underestimated below two penetration de...
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Phytoplankton in the ocean are extremely diverse. The abundance of various intracellular pigments are often used to study phytoplankton physiology and ecology, and identify and quantify different phytoplankton groups. In this study,... more
Phytoplankton in the ocean are extremely diverse. The abundance of various intracellular pigments are often used to study phytoplankton physiology and ecology, and identify and quantify different phytoplankton groups. In this study, phytoplankton absorption spectra ( a p h ( λ ) ) derived from underway flow-through AC-S measurements in the Fram Strait are combined with phytoplankton pigment measurements analyzed by high-performance liquid chromatography (HPLC) to evaluate the retrieval of various pigment concentrations at high spatial resolution. The performances of two approaches, Gaussian decomposition and the matrix inversion technique are investigated and compared. Our study is the first to apply the matrix inversion technique to underway spectrophotometry data. We find that Gaussian decomposition provides good estimates (median absolute percentage error, MPE 21–34%) of total chlorophyll-a (TChl-a), total chlorophyll-b (TChl-b), the combination of chlorophyll-c1 and -c2 (Chl-c1/...
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We report the first radiative transfer model that is able to simulate phytoplankton fluorescence with both photochemical and non-photochemical quenching included. The fluorescence source term in the inelastic radiative transfer equation... more
We report the first radiative transfer model that is able to simulate phytoplankton fluorescence with both photochemical and non-photochemical quenching included. The fluorescence source term in the inelastic radiative transfer equation is proportional to both the quantum yield and scalar irradiance at excitation wavelengths. The photochemical and nonphotochemical quenching processes change the quantum yield based on the photosynthetic active radiation. A sensitivity study was performed to demonstrate the dependence of the fluorescence signal on chlorophyll a concentration, aerosol optical depths and solar zenith angles. This work enables us to better model the phytoplankton fluorescence, which can be used in the design of new space-based sensors that can provide sufficient sensitivity to detect the phytoplankton fluorescence signal. It could also lead to more accurate remote sensing algorithms for the study of phytoplankton physiology.
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Research Interests: Geology and Oceanography
Marine phytoplankton account for approximately half of global primary productivity, making their fate an important driver of the marine carbon cycle. Viruses are thought to recycle more than one-quarter of oceanic photosynthetically fixed... more
Marine phytoplankton account for approximately half of global primary productivity, making their fate an important driver of the marine carbon cycle. Viruses are thought to recycle more than one-quarter of oceanic photosynthetically fixed organic carbon, which can stimulate nutrient regeneration, primary production and upper ocean respirationvia lytic infection and the 'virus shunt'. Ultimately, this limits the trophic transfer of carbon and energy to both higher food webs and the deep ocean. Using imagery taken by the Moderate Resolution Imaging Spectroradiometer (MODIS) onboard the Aqua satellite, along with a suite of diagnostic lipid- and gene-based molecular biomarkers, in situ optical sensors and sediment traps, we show that Coccolithovirus infections of mesoscale (~100 km) Emiliania huxleyi blooms in the North Atlantic are coupled with particle aggregation, high zooplankton grazing and greater downward vertical fluxes of both particulate organic and particulate inorga...
The biodiversity and high productivity of coastal terrestrial and aquatic habitats are the foundation for important benefits to human societies around the world. These globally distributed habitats need frequent and broad systematic... more
The biodiversity and high productivity of coastal terrestrial and aquatic habitats are the foundation for important benefits to human societies around the world. These globally distributed habitats need frequent and broad systematic assessments, but field surveys only cover a small fraction of these areas. Satellite-based sensors can repeatedly record the visible and near-infrared reflectance spectra that contain the absorption, scattering, and fluorescence signatures of functional phytoplankton groups, colored dissolved matter, and particulate matter near the surface ocean, and of biologically structured habitats (floating and emergent vegetation, benthic habitats like coral, seagrass, and algae). These measures can be incorporated into Essential Biodiversity Variables (EBVs), including the distribution, abundance, and traits of groups of species populations, and used to evaluate habitat fragmentation. However, current and planned satellites are not designed to observe the EBVs tha...
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Phytoplankton blooms are elements in repeating annual cycles of phytoplankton biomass and they have significant ecological and biogeochemical consequences. Temporal changes in phytoplankton biomass are governed by complex predator-prey... more
Phytoplankton blooms are elements in repeating annual cycles of phytoplankton biomass and they have significant ecological and biogeochemical consequences. Temporal changes in phytoplankton biomass are governed by complex predator-prey interactions and physically-driven variations in upper water-column the growth conditions (light, nutrient, temperature). Understanding these dependencies is fundamental to assessing future change in bloom frequency, duration, and magnitude and thus represents a quintessential challenge in global change biology. A variety of contrasting hypotheses have emerged in the literature to explain phytoplankton blooms, but over time the basic tenets of these hypotheses have become unclear. Here, we provide a 'tutorial' on the development of these concepts and the fundamental elements distinguishing each hypothesis. The intent of this tutorial is to provide a useful background and set of tools for reading the bloom literature and to give some suggestion...
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Spatial characteristics of phytoplankton blooms often reflect the horizontal transport properties of the oceanic turbulent flow in which they are embedded. Classically, bloom response to horizontal stirring is regarded in terms of... more
Spatial characteristics of phytoplankton blooms often reflect the horizontal transport properties of the oceanic turbulent flow in which they are embedded. Classically, bloom response to horizontal stirring is regarded in terms of generation of patchiness following large-scale bloom initiation. Here, using satellite observations from the North Pacific Subtropical Gyre and a simple ecosystem model, we show that the opposite scenario of turbulence dispersing and diluting fine-scale (∼1-100 km) nutrient-enriched water patches has the critical effect of regulating the dynamics of nutrients-phytoplankton-zooplankton ecosystems and enhancing accumulation of photosynthetic biomass in low-nutrient oceanic environments. A key factor in determining ecological and biogeochemical consequences of turbulent stirring is the horizontal dilution rate, which depends on the effective eddy diffusivity and surface area of the enriched patches. Implementation of the notion of horizontal dilution rate exp...
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Harmful Algal Blooms (HABs) are recurring events in the coastal ocean, and local economies that depend on beach and coastal use are often adversely affected by these events. Inherent optical properties (absorption and backscattering) of... more
Harmful Algal Blooms (HABs) are recurring events in the coastal ocean, and local economies that depend on beach and coastal use are often adversely affected by these events. Inherent optical properties (absorption and backscattering) of the HAB dinoflagellate Lingulodinium polyedrum were measured in order to develop specific index that would enable easier detection of this HAB organism in the field.
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The evolution of the North Atlantic Spring Bloom was observed using continuous, underway measurements of particle absorption and scattering indices in a ~10000 km2 area centered on 61N, 26W. Spectral particulate beam attenuation (cp),... more
The evolution of the North Atlantic Spring Bloom was observed using continuous, underway measurements of particle absorption and scattering indices in a ~10000 km2 area centered on 61N, 26W. Spectral particulate beam attenuation (cp), absorption (ap), and backscattering (bbp) were measured simultaneously using a novel flow-through system with an actuated valve and timer to intermittently direct seawater flow through 0.2 um filters. Initially, the phytoplankton community was dominated by large chain-forming diatoms, which were then succeeded by dinoflagellates and ultimately by picoeukaryotes, as revealed by flow cytometry, microscopy, and HPLC pigment analysis. Despite the wide range in taxonomic variability, consistent relationships between cp and bbp were observed. Further, the slope of this relationship was similar to that obtained in very different oceanic environments (from oligotrophic to mesotrophic). This covariability of the two scattering indices suggests that they are, in...
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Phytoplankton in the ocean are extremely diverse. The abundance of various intracellular pigments are often used to study phytoplankton physiology and ecology, and identify and quantify different phytoplankton groups. In this study,... more
Phytoplankton in the ocean are extremely diverse. The abundance of various intracellular pigments are often used to study phytoplankton physiology and ecology, and identify and quantify different phytoplankton groups. In this study, phytoplankton absorption spectra ( a p h ( λ ) ) derived from underway flow-through AC-S measurements in the Fram Strait are combined with phytoplankton pigment measurements analyzed by high-performance liquid chromatography (HPLC) to evaluate the retrieval of various pigment concentrations at high spatial resolution. The performances of two approaches, Gaussian decomposition and the matrix inversion technique are investigated and compared. Our study is the first to apply the matrix inversion technique to underway spectrophotometry data. We find that Gaussian decomposition provides good estimates (median absolute percentage error, MPE 21–34%) of total chlorophyll-a (TChl-a), total chlorophyll-b (TChl-b), the combination of chlorophyll-c1 and -c2 (Chl-c1/...
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Field observations and theoretical studies have shown that shapes of the volume scattering functions (VSFs) of oceanic particles in the backward directions, i.e., VSFs normalized by the total backscattering coefficient, exhibit a... more
Field observations and theoretical studies have shown that shapes of the volume scattering functions (VSFs) of oceanic particles in the backward directions, i.e., VSFs normalized by the total backscattering coefficient, exhibit a surprisingly low variability at angles near 120 degree, which is also confirmed by measurements of VSFs in coastal waters around the US. To investigate what this minimum variability angle (θ*) represents, we estimated mean values of the VSFs in the backward angles using four mean value theorems: mean value for integral, weighted mean value for integral, classic mean value for differentiation and Cauchy's mean value. We also estimated the angles corresponding to the minimum values of the VSFs. We found θ* to be very close to the angles representing the classic mean values for differentiation of the VSFs. The low variability is due to the fact that the classic mean values vary little with the composition and sizes of particles.
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The reflectance of the bottom is of importance when interpreting optical data in shallow water. Closure studies of radiative transfer, interpretation of laser line scanner data, lidar, and remote sensing in shallow waters require... more
The reflectance of the bottom is of importance when interpreting optical data in shallow water. Closure studies of radiative transfer, interpretation of laser line scanner data, lidar, and remote sensing in shallow waters require understanding of the bottom reflectance. In the Coastal Benthic Optical Properties experiment (CoBOP), extensive measurements of the material reflectance (reflectance very close to the bottom) were made. Far field reflectance will be needed in carrying out closure of the radiative transfer model and observed radiometric and inherent optical properties. The far field reflectance is the bottom reflectance that includes the effect of bottom morphology (such as sand ripples) as well as the material reflectance. We present here a first-order analytical model to derive the relationship between the material and far field reflectances. We show that the effective reflectance of the bottom is proportional to the average cosine of the bottom slope. Using a simple two-dimensional geometry without scattering and absorption, we show that errors in ignoring the bottom morphology can lead to overestimations of the far field reflectance on the order of 30%.
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... biogeochemical processes Emmanuel Boss School of Marine Sciences, University of Maine, Orono, Maine 04469 ... South Perry Reef (SP): Sand flats (15-16m depth) adja-cent to a reef containing macroalgae, sponges, and corals (7-1 5m... more
... biogeochemical processes Emmanuel Boss School of Marine Sciences, University of Maine, Orono, Maine 04469 ... South Perry Reef (SP): Sand flats (15-16m depth) adja-cent to a reef containing macroalgae, sponges, and corals (7-1 5m depth). ...