Microbial Population Biology

Compost tea is gaining importance as an alternative to chemical fertilizers and pesticides. The microbial population in the compost tea contributes toward its effectiveness. An attempt was made to enhance the biological activity of compost tea by fortification with microbial substrates. Humic acid and yeast extract (4:7 w/w 100 g-1 compost) when used as microbial starter during brewing of compost tea significantly (P less than or equal to 0.05) enhanced the microbial population. There was a ten to hundred fold percentage increase for total bacteria, fungi and actinomycetes compared to control. The stability of microbial enriched compost tea was maintained up to four months of storage based on significantly higher number of viable cell counts when compared to compost tea without substrates (control). The viable microbial cell counts over a storage period of six months was 8.5x10(9), 4.6x10(6), 3.5x10(4), 3.9x10(4), 1.4x10(5), 4.8x10(4) and 7.3x10(5) for other bacteria.

Compost tea is gaining importance as an alternative to chemical fertilizers and pesticides. The microbial population in the compost tea contributes toward its effectiveness. An attempt was made to enhance the biological activity of compost tea by fortification with microbial substrates. Humic acid and yeast extract (4:7 w/w 100 g -1 compost) when used as microbial starter during brewing of compost tea significantly (P ≤ 0.05) enhanced the microbial population. There was a ten to hundred fold percentage increase for total bacteria, fungi and actinomycetes compared to control. The stability of microbial enriched compost tea was maintained up to four months of storage based on significantly higher number of viable cell counts when compared to compost tea without substrates (control). The viable microbial cell counts over a storage period of six months was 8.5x10 9 , 4.6x10 6 , 3.5x10 4 , 3.9x10 4 , 1.4x10 5 , 4.8x10 4 and 7.3x10 5 for other bacteria, Pseudomonas sp., lactic acid bacter...

Constructed wetlands constitute an interesting option for wastewater reuse since high concentrations of contaminants and pathogenic microorganisms can be removed with these natural treatment systems. In this work, the role of key design factors which could affect microbial removal and wetland performance, such as granular media, water depth and season effect was evaluated in a pilot system consisting of eight parallel horizontal subsurface flow (HSSF) constructed wetlands treating urban wastewater from Les Franqueses del Vallès (Barcelona, Spain). Gravel biofilm as well as influent and effluent water samples of these systems were taken in order to detect the presence of bacterial indicators such as total coliforms (TC), Escherichia coli, fecal enterococci (FE), Clostridium perfringens, and other microbial groups such as Pseudomonas and Aeromonas. The overall microbial inactivation ratio ranged between 1.4 and 2.9 log-units for heterotrophic plate counts (HPC), from 1.2 to 2.2 log units for total coliforms (TC) and from 1.4 to 2.3 log units for E. coli. The presence of fine granulometry strongly influenced the removal of all the bacterial groups analyzed. This effect was significant for TC (p=0.009), E. coli (p=0.004), and FE (p=0.012). Shallow HSSF constructed wetlands were more effective for removing Clostridium spores (p=0.039), and were also more efficient for removing TC (p=0.011) and E. coli (p=0.013) when fine granulometry was used. On the other hand, changes in the total bacterial community from gravel biofilm were examined by using denaturing gradient gel electrophoresis (DGGE) and sequencing of polymerase chain reaction (PCR)-amplified fragments of the 16S rRNA gene recovered from DGGE bands. Cluster analysis of the DGGE banding pattern from the different wetlands showed that microbial assemblages separated according to water depth, and sequences of different phylogenetic groups, such as Alpha, Beta and Delta-Proteobacteria, Nitrospirae, Bacteroidetes, Acidobacteria, Firmicutes, Synergistetes and Deferribacteres could be retrieved from DGGE bands.

While considered as sustainable and low-cost agricultural amendments, the impacts of organic fertilizers on downstream aquatic microbial communities remain poorly documented. We investigated the quantity and quality of the dissolved organic matter leaching from agricultural soil amended with compost, vermicompost or biochar and assessed their effects on lake microbial communities, in terms of viral and bacterial abundances, community structure and metabolic potential. The addition of compost and vermicompost significantly increased the amount of dissolved organic carbon in the leachate compared with soil alone. Leachates from these additions, either with or without biochar, were highly bioavailable to aquatic microbial communities, although reducing the metabolic potential of the community and harbouring more specific communities. Although not affecting bacterial richness or taxonomic distributions, the specific addition of biochar affected the original lake bacterial communities, r...

Diesel is frequently encountered in coastal ecosystems due to land run-off from road surfaces. The current study investigates how partially weathered diesel at environmentally relevant concentrations, as may be seen during a run-off event, affect coastal microbial communities. A mesocosm experiment using seawater from the Bedford Basin, Nova Scotia, was followed for 72 h after the addition of partially weathered diesel. Sequencing data suggests partially weathered diesel acts quickly to alter the prokaryotic community, as both opportunistic (Vibrio and Lentibacter) and oil-degrading (Colwellia, Sulfitobacter, and Pseudoalteromonas) bacteria proliferated after 24 h in comparison to the control. In addition, total prokaryotes seemed to recover in abundance after 24 h, where eukaryotes only ceased to decrease slightly at 72 h, likely because of an inability to adapt to the oil-laden conditions, unlike the prokaryotes. Considering there were no highly volatile components (benzene, tolue...

Oil-polluted sediment bioremediation depends on both physicochemical and biological parameters, but the effect of the latter cannot be evaluated without the optimization of the former. We aimed in optimizing the physicochemical parameters related to biodegradation by applying an ex-situ landfarming set-up combined with biostimulation to oil-polluted sediment, in order to determine the added effect of bioaugmentation by four allochthonous oil-degrading bacterial consortia in relation to the degradation efficiency of the indigenous community. We monitored hydrocarbon degradation, sediment ecotoxicity and hydrolytic activity, bacterial population sizes and bacterial community dynamics, characterizing the dominant taxa through time and at each treatment. We observed no significant differences in total degradation, but increased ecotoxicity between the different treatments receiving both biostimulation and bioaugmentation and the biostimulated-only control. Moreover, the added allochthon...

In the current study, novel films with chitosan/nano/SiO2/nisin films and their antimicrobial application on cantaloupe fruit shelf-life have been studied. Novel films were prepared by the addition of 1% chitosan, 1% nano silicon dioxide, and 1% nisin and freeze-dried for the performance study. Physicochemical properties such as tensile strength, optical, and thermal properties with the performance characteristics of the novel films were measured. Coated and uncoated cantaloupes with various coating solutions were stored and chilled at 4 °C in a relative humidity of 70% for up to nine days. The microbial population measurements have been detected every three days. Results show that the fourier transform infrared intensity (FTIR) of nano/SiO2 and with the addition of nisin (nano/SiO2/n) were higher than chitosan (CH) film except in the wavenumber (3150–3750 cm−1) films peaks. Novel nanofilms enhanced tensile strength as well as optical and thermal properties. XRD analysis reported tw...

While considered as sustainable and low-cost agricultural amendments, the impacts of organic fertilizers on downstream aquatic microbial communities remain poorly documented. We investigated the quantity and quality of the dissolved organic matter leaching from agricultural soil amended with compost, vermicompost or biochar and assessed their effects on lake microbial communities, in terms of viral and bacterial abundances, community structure and metabolic potential. The addition of compost and vermicompost significantly increased the amount of dissolved organic carbon in the leachate compared with soil alone. Leachates from these additions, either with or without biochar, were highly bioavailable to aquatic microbial communities, although reducing the metabolic potential of the community and harbouring more specific communities. Although not affecting bacterial richness or taxonomic distributions, the specific addition of biochar affected the original lake bacterial communities, r...

Compost tea is gaining importance as an alternative to chemical fertilizers and pesticides. The microbial population in the compost tea contributes toward its effectiveness. An attempt was made to enhance the biological activity of compost tea by fortification with microbial substrates. Humic acid and yeast extract (4:7 w/w 100 g -1 compost) when used as microbial starter during brewing of compost tea significantly (P ≤ 0.05) enhanced the microbial population. There was a ten to hundred fold percentage increase for total bacteria, fungi and actinomycetes compared to control. The stability of microbial enriched compost tea was maintained up to four months of storage based on significantly higher number of viable cell counts when compared to compost tea without substrates (control). The viable microbial cell counts over a storage period of six months was 8.5x10 9 , 4.6x10 6 , 3.5x10 4 , 3.9x10 4 , 1.4x10 5 , 4.8x10 4 and 7.3x10 5 for other bacteria, Pseudomonas sp., lactic acid bacter...

Chlorinated solvents are among the common groundwater contaminants that show high complexity in their distribution in the subsoil. Microorganisms play a vital role in the natural attenuation of chlorinated solvents. Thus far, how the in situ soil microbial community responds to chlorinated solvent contamination has remained unclear. In this study, the microbial community distribution within two boreholes located in the source area of perchloroethene (PCE) was investigated via terminal restriction fragment length polymorphism (T-RFLP) and clone library analysis. Microbial data were related to the lithological and geochemical data and the concentration and isotopic composition of chloroethenes to determine the key factors controlling the distribution of the microbial communities. The results indicated that Proteobacteria, Actinobacteria, and Firmicutes were the most abundant phylums in the sediment. The statistical correlation with the environmental data proved that fine granulometry,...

Background and aims The characterisation of plant-available phosphorus (P) pools and the assessment of the microbial community in the rhizosheath of cover crops can improve our understanding of plant–microbe interactions and P availability. Methods Mustard (Sinapis alba), phacelia (Phacelia tanacetifolia) and buckwheat (Fagopyrum esculentum) were grown as cover crops before soybean (Glycine max) in an on-farm experiment on a soil low in available P in southwest Germany. The cycling of P through the cover crop biomass and the enzyme-availability of organic P (Porg) pools in the cover crop rhizosheath were characterised. The soil microbial community (PLFA), activity (acid and alkaline phosphomonoesterase, as well as phosphodiesterase), and microbial P were assessed. The abundance of 16S-rRNA and phoD, coding for alkaline phosphomonoesterase in bacteria, were quantified using real-time qPCR. Results Mustard contained the greatest amount of P in its large biomass. In the rhizosheath of ...