Evaluating and Ranking the Vulnerability of Global
Marine Ecosystems to Anthropogenic Threats
BENJAMIN S. HALPERN,∗ § KIMBERLY A. SELKOE,∗ † FIORENZA MICHELI,‡
AND CARRIE V. KAPPEL∗ ‡
∗
National Center for Ecological Analysis and Synthesis, 735 State Street, Santa Barbara, CA 93101, U.S.A.
†Hawai’i Institute of Marine Biology, University of Hawai’i, P.O. Box 1346, Kane’ohe, HI 96744, U.S.A.
‡Hopkins Marine Station, Stanford University, Pacific Grove, CA 93950, U.S.A.
Abstract: Marine ecosystems are threatened by a suite of anthropogenic stressors. Mitigating multiple threats
is a daunting task, particularly when funding constraints limit the number of threats that can be addressed.
Threats are typically assessed and prioritized via expert opinion workshops that often leave no record of the
rationale for decisions, making it difficult to update recommendations with new information. We devised a
transparent, repeatable, and modifiable method for collecting expert opinion that describes and documents
how threats affect marine ecosystems. Experts were asked to assess the functional impact, scale, and frequency
of a threat to an ecosystem; the resistance and recovery time of an ecosystem to a threat; and the certainty
of these estimates. To quantify impacts of 38 distinct anthropogenic threats on 23 marine ecosystems, we
surveyed 135 experts from 19 different countries. Survey results showed that all ecosystems are threatened by
at least nine threats and that nine ecosystems are threatened by >90% of existing threats. The greatest threats
(highest impact scores) were increasing sea temperature, demersal destructive fishing, and point-source organic
pollution. Rocky reef, coral reef, hard-shelf, mangrove, and offshore epipelagic ecosystems were identified as
the most threatened. These general results, however, may be partly influenced by the specific expertise and
geography of respondents, and should be interpreted with caution. This approach to threat analysis can identify
the greatest threats (globally or locally), most widespread threats, most (or least) sensitive ecosystems, most (or
least) threatened ecosystems, and other metrics of conservation value. Additionally, it can be easily modified,
updated as new data become available, and scaled to local or regional settings, which would facilitate informed
and transparent conservation priority setting.
Keywords: ecosystem resilience, ecosystem resistance, ecosystem recovery time, ecosystem vulnerability, functional group, global threat analysis, human impact assessment, threat frequency
Evaluación y Clasificación de la Vulnerabilidad a las Amenazas Antropogénicas de los Ecosistemas Marinos Globales
Resumen: Los ecosistemas marinos están amenazados por un conjunto de factores antropogénicos. La mitigación de amenazas múltiples es una tarea desalentadora, particularmente cuando las restricciones de financiamiento limitan el número de amenazas que pueden ser abordadas. Las amenazas que tı́picamente son
atendidas y priorizadas en talleres de expertos que a menudo no dejan registros del fundamento de las decisiones, lo que dificulta la actualización de recomendaciones con información nueva. Diseñamos un método
modificable, repetible y transparente para recolectar la opinión de expertos que describe y documenta los
efectos de las amenazas sobre los ecosistemas marinos. Se les pidió a expertos que evaluaran el impacto funcional, la escala y la frecuencia de una amenaza a un ecosistema; la resistencia y el tiempo de recuperación
de un ecosistema y la certidumbre de estas estimaciones. Para cuantificar los impactos de 38 amenazas
antropogénicas sobre 23 ecosistemas marinos, encuestamos a 135 expertos de 19 paı́ses. Los resultados de
la encuesta mostraron que todos los ecosistemas están amenazados por lo menos por nueve causas y que
§email halpern@nceas.ucsb.edu
Paper submitted August 16, 2006; revised manuscript accepted April 11, 2007.
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C 2007 Society for Conservation Biology
DOI: 10.1111/j.1523-1739.2007.00752.x
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nueve ecosistemas están amenazados por >90% de las amenazas existentes- las mayores amenazas (valores
de impacto más altos) fueron el incremento de la temperatura de los mares, la pesca demersal destructiva y
la contaminación orgánica. Los ecosistemas más amenazados fueron los arrecifes rocosos, arrecifes coralinos,
manglares y epipelágicos. Sin embargo, estos resultados generales pueden estar parcialmente influidos por
la habilidad especı́fica y la geografı́a de los encuestados, y deben ser interpretados con cautela. Este método
para el análisis de amenazas puede identificar las mayores amenazas (globales o locales), las amenazas
más extendidas, los ecosistemas más (o menos) amenazados y otras medidas de valor para la conservación.
Adicionalmente, el método puede ser modificado fácilmente, actualizado conforme se disponga de más datos
y ajustado para escalas locales o regionales, lo que facilitarı́a la definición de prioridades de conservación de
manera informada y transparente.
Palabras Clave: análisis de amenazas globales, evaluación del impacto humano, frecuencia de amenazas, grupo
funcional, resistencia de ecosistemas, tiempo de recuperación de ecosistemas, vulnerabilidad de ecosistemas
Introduction
Human activities now affect nearly every marine ecosystem (e.g., Glover & Smith 2003; POC 2003). The number
and variety of threats can be overwhelming to management and conservation efforts. Mapping where threats occur is important for management, but does not explicitly
account for differences in the extent and nature of ecosystem responses to threats. For example, bottom-trawl fisheries have significantly more severe and long-lasting impacts on epibenthic communities living on hard versus
soft substrates and even greater impact with increasing
water depth because individual growth rates decrease and
recovery times increase (Watling & Norse 1998; Thrush &
Dayton 2002). Understanding these differences in ecosystem response is critical to knowing which threats have the
biggest impact on different ecosystems and how to best
address them at different scales. Quantifying these differences allows threats to be ranked based on the severity
of their impact.
Many conservation organizations are currently developing global prioritization models for conservation action in marine systems (e.g., Olson & Dinerstein 1998)
that rely on ranking the impact of threats. For example, it
may be efficient and appropriate to ignore land–sea connections if ocean-based threats, such as fishing, have an
overwhelming effect on a particular marine ecosystem.
In fact, conservation at all scales would benefit from a
systematic and transparent method for ranking threats to
marine ecosystems. The challenge of ecosystem-specific
threat ranking is that hundreds of threat-ecosystem combinations exist. A literature review encompassing all possible threat-ecosystem combinations would be daunting
and full of gaps. Consequently, as a substitute, conservation planners traditionally use expert opinion on how
threats affect ecosystems. This approach is valid and efficient, but often the methods used and scientific evidence
underlying the assessment are not made explicit and the
process lacks a paper trail. Thus, it is usually impossible
to assess sources of uncertainty in threat assessments.
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For instance, how does one determine how experts took
information about different facets of threats (e.g., spatial extent, frequency of occurrence, magnitude) into account? We need a quantitative, replicable, and transparent
method for determining the impact of any given threat on
a particular ecosystem to ensure that information about
the ranking process is preserved and to allow for evaluation and revision of resulting decisions as new information becomes available.
Several threat-ranking and evaluation systems have
been developed to aid conservation priority setting (e.g.,
Bryant et al. 1998; TNC 2000; Zacharias & Gregr 2005;
Kappel 2005; and innumerable recovery plans for endangered species). Those with a marine focus have addressed
only a single ecosystem and a few threats (Bryant et al.
1998), were species (Kappel 2005) or “feature” focused
(Zacharias & Gregr 2005), or did not explicitly evaluate
or record why threats are problematic (TNC 2000). Our
approach differs in several ways. First, in response to the
recent emphasis on ecosystem-based management in marine systems (e.g., POC 2003), we assessed the scale of
threat impact from single species to the entire ecosystem. Second, we included the full suite of marine ecosystem types and potential threats. Third, we explicitly accounted for the level of certainty in threat rankings. Finally, we used expert opinion and published studies in a
transparent and quantitative way so that results would be
repeatable and easy to update in the future.
Using this method, we surveyed experts from around
the world, and the results allowed us to address a series
of critical questions: What are the most important current threats within and across ecosystems? Which ecosystems are most vulnerable to human activities? Which factors drive differences in ecosystem susceptibility, and is
it possible to quantify those differences? By developing
our method and answering these questions, we devised a
flexible tool for systematically assessing the impact of human activities on global marine ecosystems and then implemented it. Local- and regional-scale conservation and
resource management efforts can gain significant insight
Halpern et al.
from a global analysis and can follow our method to conduct finer-scale analyses for region-specific rankings.
Methods
In two workshops that convened academic, nongovernmental, and agency scientists from around the world,
we identified 23 distinct marine ecosystems (Table 1) intended to include all major ecosystems commonly recognized by the resource management and conservation
communities. The list can be easily modified in future
applications to include further subdivisions or alternate
classifications. We also identified 20 categories of threats
to marine ecosystems, building on previously published
lists (Bryant et al. 1998; Kappel 2005), with an additional
18 subcategories (Table 1; complete descriptions of all
threats are available from http://www.nceas.ucsb.edu/
∼halpern/html/explanations.html.). Although threats
could be subdivided further, this list captures the major regional and global anthropogenic threats. We subdivided
fishing because different types of fishing can have dramatically different consequences for marine ecosystems.
Climate change and pollutant input were subdivided because the sources of different subthreats differ in their
consequences for ecosystems. Freshwater and sediment
input were subdivided because humans can either increase or decrease both (e.g., the effects of dams versus
channelization) with potentially different consequences.
Finally, we subdivided nutrient input because nutrientrich upwelling zones are less likely to be affected by nutrient addition than oligotrophic systems in which nutrients
generally limit plant growth.
The impact of a threat on a species or ecosystem is determined by the ecosystem’s vulnerability to that threat.
Wilson et al. (2005) reviewed and synthesized various
methods for assessing ecosystem vulnerability. Expanding
on their framework, we evaluated vulnerability by considering the spatial scale, frequency, and functional impact
of each threat in each marine ecosystem; the resistance
of the ecosystems to disturbance by each threat; and the
resilience (i.e., recovery time) of the ecosystems following such disturbance. We included a measure of certainty
that allowed the ranks selected for each vulnerability factor to be qualified by the level of certainty in the survey
response.
Vulnerability Factors
We defined spatial scale as the average scale at which a
threat event affects the ecosystem, based on a logarithmic
system ranging from zero (ecosystem unaffected) to six
(scale >10,000 km2 ; Table 2). Spatial scale was not the
scale at which threats exist (most can be found almost
everywhere). For example, a single pass of a demersal
trawl may cover approximately 1–10 km2 , whereas de-
Threats to Marine Ecosystems
3
mersal trawling overall affects 1000s of km2 of continental shelf ecosystems each year. The vulnerability measure
focuses on the first scale. The second would be captured
by mapping actual spatial distributions of threats. Scale
was intended to include both direct and indirect impacts.
For example, dredging a channel within the mouth of a
bay may directly affect only a small area but indirectly affect an entire estuary by altering tidal flow. In this case
the scale of the threat encompasses the entire bay.
We used frequency to describe how often discrete
threat events occur in a given ecosystem. Values ranged
from “never occurs” to “persistent threat” (Table 2). For
those threats that occur as discrete events, frequency represented how often new events occur, not duration of
a single event. Furthermore, some threats affect only a
few species, whereas others affect entire ecosystems. To
capture these differences in what we have termed functional impact we used a four-category ranking scheme
that ranged from species to ecosystem levels (Table 2).
We used resistance to describe the average tendency
of a species, trophic level, community, or ecosystem to
resist changing its “natural” state in response to a threat.
Because of the difficulty of developing a common metric that could be used across multiple levels of organization from species to ecosystems and across widely varying threat-by-ecosystem combinations, we used qualitative ranks for this vulnerability measure (Table 2). These
ranks referred to the resistance of the ecosystem components that react to the threat (i.e., the functional level
identified above). Recovery time was the average time required for the affected species, trophic level(s), or ecosystem to return to its prethreat state (Table 2). Because
populations, communities, and ecosystems are dynamic
in nature, they need not (and are unlikely to) return to
their exact prethreat condition to be deemed “recovered”
(Beisner et al. 2003). For persistent threats we considered
recovery time following removal of the threat. Finally, we
included a qualitative measure of certainty that allowed
respondents to indicate the depth of knowledge used to
determine vulnerability (Table 2).
Threat Modifier Model
In an ideal world empirical studies would exist for every threat-ecosystem combination so that quantitative,
experiment-based rankings of the relative impact of
threats could be produced. Nevertheless, with 874 threatecosystem combinations in our study (38 threats times
23 ecosystems), data that readily translated into our vulnerability ranking system were available for only a small
percentage of these combinations. Thus, to ensure comparable evaluations of all threat-ecosystem combinations,
we called on scientists who have evaluated and published
work on threats to ecosystems to translate their knowledge into the vulnerability rankings.
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Table 1. Overall weighted-average scores for ecosystem vulnerability to each threat for each marine ecosystem.a
continued
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Threats to Marine Ecosystems
Table 1. (continued)
a Shading highlights the range of values in which each threat-by-ecosystem score lies: black > 3.0; gray 2.0–3.0; light gray 1.0–2.0; and white
<1.0. These shades should not be used to identify strict categories of threat (i.e., a gray score of 2.99 is essentially the same as a black score of
3.01). The numbers at the top of each column are the number of respondents for that ecosystem type and an asterisk ( ∗ ) shows an ecosystem
for which a literature survey was conducted.
b See http://www.nceas.ucsb.edu/∼halpern/html/explanations.html for a full explanation of each threat type.
c Suspension reefs are ecosystems defined by suspension feeders, such as oyster reefs.
d Oligotrophic waters are nutrient poor, whereas eutrophic waters are nutrient rich. Nutrient input into these different waters is expected to
have different impacts.
e Subtidal soft bottom includes all shallow, soft bottom ecosystems.
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Table 2. Ranking systems for each vulnerability measure used to assess how threats affect marine ecosystems.
Vulnerability measure
Category
Rank
Descriptive notes
Example
Scale (km2 )
no threat
<1
1–10
10–100
0
1
2
3
100–1,000
4
1,000–10,000
>10,000
5
6
never occurs
rare
0
1
occasional
annual or regular
2
3
persistent
4
no impact
species (single or multiple)
0
1
single trophic level
2
>1 trophic level
3
entire community
4
no impact
high
0
1
medium
2
low
3
no impact
<1
1–10
0
1
2
10–100
3
>100
4
none
low
medium
0
1
2
high
3
very high
4
anchor damage
single trawl drag
sediment run-off from
deforestation
land-based pollution from
run-off of large rivers
an invasive species
sea surface temperature change
Frequency
infrequent enough to affect long-term
dynamics of a given population or
location
frequent but irregular in nature
frequent and often seasonal or
periodic in nature
more or less constant year-round,
lasting through multiple years or
decades
large oil spill
toxic algal blooms
runoff events due to seasonal
rains
persistent hypoxic zones
Functional impact
one or more species in a single or
different trophic levels
multiple species affected; entire
trophic level changes
multiple species affected; multiple
trophic levels change
cascading effect that alter the entire
ecosystem
ship strikes on whales
overharvest of multiple species
within the same trophic guild
overharvest of key species from
multiple trophic guilds
ocean temperature increase and
fatal bleaching of coral reefs
Resistance
trawling on soft-sediment
no significant change in biomass,
communities
structure, or diversity until extreme
threat levels
moderate intensities or frequencies of effects of industrial pollution
a threat lead to change
run-off on coastal species
slightest occurrence of a threat causes blast fishing in coral reefs
a change, or all-or-nothing threats
Recovery time ( years)
Certainty
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kelp recovery after disturbance
short-lived species recovery
from episodic toxic pollution
long-lived species recovery from
overfishing
deep sea coral recovery after
trawl damage
very little or no empirical work exists
some empirical work exists or expert
has some personal experience
body of empirical work exists or the
expert has direct personal
experience
extensive empirical work exists or
the expert has extensive personal
experience
Halpern et al.
Web Survey of Experts
We used an on-line, annotated survey of experts to quantify how each threat affects the ecosystem(s) in geographic region(s) where their expertise was strongest,
based on the five vulnerability factors (www.nceas.ucsb.
edu/∼halpern/html/expert survey.htm). The survey instrument was tested on a core group of five experts and
modified for clarity based on their input. Experts were
identified by searching the Web of Science for literature
on each threat-ecosystem combination (e.g., pollution
and mangrove), and all authors with listed email addresses
were contacted about the survey. We requested these people to pass our invitation on to other experts in one or
more ecosystems. Although respondents represented a
mix of academic, agency, and nongovernmental organization (NGO) scientists, our sample contained more academic experts because we used publication in the peerreviewed literature as a source of identification. We sent
surveys to 370 experts on all 23 marine ecosystems and received responses from 135 of them (37% response rate)
from 19 different countries (Table 3). Reminder emails
were sent up to three times over a 2-month period. Affiliation, geographic distribution, and gender of respondents
were similar to those of the experts contacted (Table 3),
indicating low likelihood of nonrespondent bias for these
variables. Participants were provided descriptions of the
vulnerability factors in a language similar to that above
and in Table 2 (http://www.nceas.ucsb.edu/∼halpern/
html/Matrix Instructions.pdf). Participants were asked to
fill in vulnerability values for all 38 potential threats for
an ecosystem and could annotate their responses. At the
end of the survey, participants were asked to state which
three threats they thought were most important (termed
stated answers), in order of importance, without making
explicit reference to our vulnerability measures.
Literature-Based Surveys
For the 10 ecosystems for which we received fewer than
five completed surveys, we supplemented the data with
a thorough literature review that counted as a single additional survey response. Thus, survey sample sizes were
still small, suggesting caution in interpreting results for
these ecosystems (although sample size did not correlate
with variance in responses). For many threat-ecosystem
combinations, relevant published empirical research was
not available. We set vulnerability to zero when logically
justifiable (e.g., effects of sea level rise on deep-water
ecosystems), but left the vulnerability rankings blank in
all other cases for which we had insufficient information
on effects of threats (14.5% of the time).
Modifier Model
We combined the five vulnerability measures and the certainty measure into a single weighted-average vulnerabil-
Threats to Marine Ecosystems
7
ity score that represents (in relative terms) how vulnerable a given ecosystem is to a given threat. The weightedaverage vulnerability score was calculated in two steps:
averaging across replicate survey responses, and combining the five factors into one weighted-average score. For
each threat-ecosystem combination, we rescaled “scale”
and “resistance” values to range from 0 to 4 (multiplied
by 4/6 and 4/3, respectively), so all vulnerability measures
were comparable. Then each 0–4 rank was multiplied by
the certainty value, and the sum of these weighted values
for each vulnerability measure was divided by the sum of
the certainty values. This weighted average gives greater
importance to values with higher certainty (and presumably higher precision), but may lower weighted scores for
poorly studied threat-ecosystem combinations. Additionally, it may be sensitive to the scale of the categories used
for each vulnerability measure.
Assuming equal weighting of the five vulnerability measures, we took the grand mean of their weighted averages to get a single rank (from 0 to 4) that indicated
how a given threat affects a particular ecosystem. This
assumption seems reasonable because an extreme value
in any single vulnerability measure could lead to ecosystem demise, and it decreases the sensitivity of the average to the categorical scales used. However, weighting
could easily be adjusted if a given vulnerability measure
was thought to play a larger role in determining ecosystem vulnerability. Because experts occasionally did not
know how a particular threat affected an ecosystem and
therefore left vulnerability scores blank, several threat-byecosystem combinations had smaller sample sizes than
reported for the entire ecosystem.
We tested whether ecosystems differed significantly in
their average vulnerability scores across all threats with
analysis of variance. Similarly, we determined whether
threats differed significantly by comparing average vulnerability scores across all ecosystems.
Expert Versus Model Output
We wanted to know whether simply asking experts to
state the top three threats affecting a given ecosystem
would result in different outcomes for the final ranking
of threats compared with the survey’s quantitative assessment. Using the aggregate data for each ecosystem,
we compared the three threats most frequently listed
by respondents at the end of the survey to the three
threats with the highest vulnerability scores based on the
weighted average of all responses for that ecosystem. In
addition, for coral reefs, one of our best-sampled ecosystems, we examined consistency within individual survey
responses by examining the frequency of matches between individuals’ stated top threats and the top threats
based on individual vulnerability scores. We did not examine the specific ranking (first, second, or third); rather,
we determined whether both methods identified a given
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1
3
2
4
1
1
2
1
Survey respondents (%)
3
1
Experts contacted (%)
1
Ice
3
1
Deep water
1
1
1
Surface water
1
1
1
1
2
1
Vent
1
1
5
3
Deep seamount
3
5
1
2
Soft benthic
3
Hard slope
Subtidal mud
5
Soft slope
Suspension-feeder reef
8
4
Hard shelf
Rocky reef
7
13
4
7
Soft shelf
Kelp forest
9
3
2
2
Seagrass
Salt marsh
1
3
2
1
Mangrove
4
Coral reef
Geographic locationb
Asia
India
Singapore
Europe
UK
Norway
Sweden
Germany
Spain
Greece
Italy
Africa
South Africa
Tanzania
North/Central America
USA
Canada
Mexico
South America
Chile
Brazil
Australasia
Australia
New Zealand
Middle East
Israel
Geographic expertisec
Caribbean
Indian Ocean
W. Pacific
S. Pacific
N. Pacific
Mid-East
S. Atlantic
N. Atlantic
Arctic
Southern Oceans
Mediterranean
10
3
Beach
Institutional type
academic
NGO
agency
Intertidal mud
Rocky intertidal
Table 3. Institutional affiliation, geographic expertise, and geographic location of respondents to the survey of how different threats affect marine
ecosystems.a
81.6 68.1
9.5 12.6
8.9 19.3
3.5
4.4
21.6
8.9
4.9
0.7
1
1
1
1
1
1
1
1
1
1
59.7 74.1
7
5
3
12
1
5
4
12
1
7
5
5
4
5
5
3
1
3
4
4
1
2
1
1
2.4
3.7
7.0
6.7
0.8
1.5
2
1
1
3
1
1
4
1
1
1
1
1
1
1
1
3
6
1
2
1
1
2
3
3
2
1
1
2
1
1
1
3
8
8
10
10
8
1
1
5
3
3
3
2
4
1
1
2
1
1
1
1
1
1
7
1
7
1
1
1
1
6
2
4
1
3
1
2
2
1
1
1
1
1
4
2
1
1
1
3
1
3
2
1
1
1
1
3
2
1
1
1
2
2
1
3
2
1
1
2
1
3
1
1
1
1
1
4
2
1
1
1
1
a Numbers show how many experts had that trait for that ecosystem. The final two columns are summary statistics. Seven people responded for
two ecosystems, one person responded for three ecosystems, and two people responded for five ecosystems.
b Countries represented in the contacted list but not in the response list include Indonesia, Korea, Japan, Poland, Finland, Netherlands,
Denmark, Belgium, France, Portugal, Ireland, Greece, Sao Tome, South Africa, Fiji, Vietnam, Hong Kong, Oman, and Argentina.
c Respondents often identified more than one area of geographic expertise, so the sum of these values is often greater than the number of
respondents.
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threat in the top three. When volunteered top threats
were more general than the subcategories we used (e.g.,
“fishing” vs. “pelagic fishing with high bycatch”), we
matched them to the most relevant specific threat from
the vulnerability survey.
Results
Expert opinion and literature surveys produced overall vulnerability scores (on a continuous scale) for each
threat-ecosystem combination (Table 1). Summing all
scores across threats essentially ignores zero values and
provides ranks based only on threats that have an impact,
whereas average scores account for zero values. By either measure, the survey results identified increasing sea
temperature, demersal destructive fishing, coastal development, point-source and nonpoint-source organic pollution, increasing sediment input, hypoxia, and direct human impact as the greatest threats (i.e., highest 20% of
impact scores), in decreasing order of importance (Table
1; Supplementary Material). In contrast, the threats with
the least impact on ecosystems were aquarium-trade fishing, ocean mining, and ozone depletion. Nevertheless,
even threats with low overall impact scores can have severe impacts on certain ecosystems; indeed, survey results showed that both high- and low-bycatch pelagic fishing have large effects on pelagic ecosystems in particular.
Hard shelf, rocky reefs, epipelagic offshore waters, and
rocky intertidal ranked as the ecosystems most vulnerable to threats (Table 1; Supplementary Material). Several
deep-ocean ecosystems ranked as least threatened, including hydrothermal vents, deep water, and seamounts.
The most threatened ecosystems ranked high because
they are afflicted by many threats, particularly multiple
types of fishing (Table 1). In contrast, experts considered some ecosystems to be imperiled by only a few
high-impact threats. Comparisons across ecosystems allowed for ranking the relative impact of a threat to different ecosystem types. For example, demersal destructive fishing had the highest impacts on hard-shelf and
canyon ecosystems, deep seamounts, and suspensionfeeder reefs, whereas sea level rise was the greatest threat
to intertidal ecosystems, coral reefs, and seagrasses.
We used comparisons of values within a single ecosystem to identify the threats with the most and least impact on a particular ecosystem. In most cases the survey responses confirmed results of previous analyses for
specific ecosystems. The top three threats to coral reefs
were coastal development, increased sediment input, and
changes in sea temperature, with increased nutrient input, sea level rise, and artisanal fishing also posing major
threats (Table 1; Bryant et al. 1998). Experts considered
kelp forests threatened primarily by demersal and recreational fishing (Steneck et al. 2002) and salt marshes most
threatened by sea level rise, coastal engineering and de-
Threats to Marine Ecosystems
9
velopment, and species invasions (Adam 2002). Results
for some ecosystems were surprising: coastal development and recreational fishing were the highest threats
within hard-shelf ecosystems and ecotourism was ranked
as a threat to hard- and soft-shelf ecosystems. Our approach allowed us to determine the primary drivers of
results in Table 1 by examining individually the five vulnerability factors (Supplementary Material). Functional
impact had the highest average vulnerability value among
the five measures for most threats (23 of 38 threats), and
it was a close second for nine others (Table 4), indicating
that high overall scores were largely driven by functional
impact. In contrast, recovery time and scale most often
had the lowest scores (for 20 and 16 threats, respectively),
indicating that in general most systems were considered
resilient to threats and a majority of threats act at fairly
small spatial scales. There were of course notable exceptions to this, for example, the large-scale effects of climate
change and relatively slow recovery from destructive demersal fishing in many systems.
Average vulnerability scores (Table 4) also provided
insight into why particular threats are greater than others. The largest-scale threats were climate-change-based
threats, species invasion, and hypoxia. Highest-frequency
threats were increasing sea surface temperature, coastal
development, and point-source organic pollution, which
all tend to be persistent rather than episodic. The threats
with greatest functional impact were increasing sedimentation, point-source organic pollution, and hypoxia, and
all threats that tend to affect abiotic characteristics of
ecosystems. Experts considered ecosystems least resistant to and to have the longest recovery times from demersal destructive fishing, point-source organic pollution, coastal development, and increasing sea surface temperature.
Ecosystems differed in the drivers of their vulnerability.
For instance, coral reefs and deep soft benthic ecosystems
were considered vulnerable to threats primarily because
of low resistance to and slow recovery from threats (Table 5). On the other hand, hard-shelf ecosystems were
considered highly threatened because of vulnerability to
the scale, frequency, and functional impact of threats (see
Supplementary Material).
Across all ecosystem-threat vulnerability measures,
only half (50.3%) had standard deviations for rescaled
values <1.0. This high variance was largely consistent
for each ecosystem type, even for ecosystems with large
numbers of respondents. There was no relationship between survey sample size within an ecosystem and the
variance in response values (Fig. 1). Some of this variance
was likely due to regional variation in how ecosystems respond to threats: although all ocean basins and seas were
represented in survey responses, experts reported basing
their responses on knowledge of the Indian, West Pacific,
South Atlantic, Artic, southern oceans, or the Mediterranean <10% of the time. Many more responses were
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10
Threats to Marine Ecosystems
Halpern et al.
Table 4. Average values across all marine ecosystem types for each of the five measures of ecosystem vulnerability for each threat type and the
certainty of respondents to the survey on how threats affect marine ecosystems.∗
Threat
Freshwater input
increase
decrease
Sediment input
increase
decrease
Nutrient input
oligotrophic
eutrophic
Pollutant input
atmospheric
point, organic
point, nonorganic
nonpoint, organic
nonpoint, nonorganic
Coastal engineering
Coastal development
Direct human
Aquaculture
Fishing
demersal, destructive
demersal, nondestructive
pelagic, high bycatch
pelagic, low bycatch
aquarium
IUU
artisanal, destructive
artisanal, nondestructive
recreational
Climate change
sea level
sea temperature
acidification
ozone/UV
Species invasion
Disease
Harmful algal blooms
Hypoxia
Ocean-based pollution
Commercial activity
Ocean mining
Offshore development
Benthic structures
Ecotourism
∗ High
Scale
Frequency
Functional impact
Resistance
Recovery time
Certainty
0.9
0.7
1.1
0.8
1.4
1.1
0.8
0.7
0.6
0.5
1.8
1.7
1.2
0.4
2.0
0.9
2.7
1.4
1.7
0.7
1.2
0.5
1.7
1.4
0.8
1.0
1.2
1.6
1.6
2.0
1.4
1.1
0.8
0.9
1.6
1.8
1.1
1.1
0.9
1.2
1.1
0.9
1.3
1.1
0.8
1.3
2.0
1.5
1.7
1.5
1.5
2.1
1.9
1.4
1.0
2.5
1.4
1.7
1.2
1.9
2.2
1.9
1.3
0.8
2.1
1.5
1.5
1.5
1.8
2.0
1.8
1.2
1.0
1.4
1.1
1.1
1.0
1.2
1.5
1.3
0.8
1.4
1.7
1.5
1.5
1.4
2.2
2.3
2.4
2.0
1.3
1.0
0.7
0.6
0.3
0.6
0.4
0.5
0.9
1.8
1.5
0.7
0.5
0.5
0.9
0.7
1.0
1.5
2.2
1.4
0.7
0.6
0.5
1.0
0.9
0.8
1.2
2.1
1.4
0.6
0.4
0.4
1.0
0.8
0.7
1.2
1.8
1.2
0.6
0.4
0.3
0.8
0.6
0.7
1.0
2.0
1.7
1.8
1.7
1.7
1.3
1.9
1.9
2.0
1.7
2.2
1.5
0.8
1.4
0.9
1.1
1.5
0.7
0.8
0.6
0.5
0.6
0.6
1.7
2.3
1.4
0.8
1.5
0.8
1.2
1.6
1.1
1.0
0.5
0.8
1.0
1.1
1.8
2.2
1.4
0.7
1.7
0.9
1.6
2.3
0.9
0.9
0.8
0.9
1.3
0.9
1.2
2.0
1.2
0.6
1.4
0.9
1.2
2.1
1.2
0.8
0.5
0.8
1.2
0.7
0.9
1.7
1.0
0.4
1.0
0.7
0.8
1.2
1.0
0.7
0.5
0.7
1.0
0.5
2.0
1.5
1.5
1.8
1.5
1.3
1.7
1.5
1.5
1.7
1.5
1.6
1.4
2.0
values for resistance and recovery time represent low resistance and long recovery times.
based on knowledge of the North Pacific (28.3%), North
Atlantic (12.6%), South Pacific (12.6%), and Caribbean
(11.7%) oceans. Sample sizes for each region within an
ecosystem type were not large enough to test whether
variance was lower within versus among regions (Table 3).
Consistency between the top three threats volunteered
by experts and the top three threats revealed by average vulnerability scores was low (Table 6). In the overall
analysis consistency ranged from no overlap for rocky
intertidal, subtidal mud, and soft deep benthic habitats
to complete agreement for kelp forest, with an average
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consistency of 51.7%. This inconsistency existed within
ecosystems as well. Consistency between individual respondents’ volunteered versus surveyed top threats for
coral reefs was only 39%, much lower than the overall
average for coral reefs (67%), with individual consistency
ranging from 0% to 100%.
Discussion
Human activities are affecting nearly every part of
the world’s oceans, creating a difficult challenge for
Threats to Marine Ecosystems
∗ The three highest values for each measure are coded by shades of gray ( black, dark gray, and light gray, respectively). Because of rounding, values may appear equal but are not exactly the
same.
Table 5. Average scores for each of the five measures of ecosystem vulnerability and the certainty of respondents to the survey on how threats affect each marine ecosystem.∗
Halpern et al.
11
Figure 1. Variance around weighted average scores
from survey responses within each marine ecosystem
relative to the number of experts surveyed for that
ecosystem. Ecosystems with only one survey response
were excluded. Each point is a particular ecosystem
vulnerability measure for a threat-ecosystem
combination (n = 3800). About one-quarter of the
data are at SD = 0 (n = 1027).
conservationists and managers. How does one decide
which threats or ecosystems to focus on first, or where
one might achieve the greatest return on conservation
investment? Our method for assessing ecosystem vulnerability to current threats allows scientists and managers
to catalog and compare anthropogenic threats to marine
ecosystems and explicitly identify why a threat affects a
particular ecosystem in a quantifiable, transparent, and
repeatable way. This allows for clear communication of
the basis for a threat ranking and provides a relatively easy
means to modify the overall ranking as additional information becomes available.
We used this method to provide the first systematic and
comprehensive assessment of how current threats affect
the world’s marine ecosystems. Our results indicate that
every marine ecosystem is affected by multiple threats
and that many ecosystems are affected at some level by
every identified threat. Somewhat surprisingly, only one
of the greatest threats (highest impact scores) was ocean
based (demersal destructive fishing); others (sea temperature rise, coastal development, point-source organic pollution, increased sediment input, hypoxia, and direct human impact) are all driven by land-based activities. Consequently, effective marine conservation and management
will have to address terrestrial, freshwater, and marinebased threats simultaneously. These general results should
be interpreted with caution because scarcity of information for many of the threat-by-ecosystem combinations, geographic biases in the expertise of respondents,
and variation in how respondents may have interpreted
the vulnerability factors likely influenced results in some
cases. Nevertheless, our results provide an initial assessment of ecosystem vulnerability, illustrate the potential of
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Threats to Marine Ecosystems
Halpern et al.
Table 6. Consistency (% similarity) between the top three threats to
marine ecosystems calculated from the expert survey (average
ecosystem vulnerability scores) and the most frequently stated threats
by respondents to the survey on how threats affect each marine
ecosystem.∗
Habitat
Intertidal
rocky intertidal
intertidal mud
beach
salt marsh
mangrove
seagrass
Coastal
coral reef
kelp forest
rocky reef
suspension-feeding reef
subtidal mud
ice
soft shelf
hard shelf
Oceanic
soft slope
hard slope
soft benthic (deep)
deep seamount
vent
soft canyon
hard canyon
surface water
deep water
Overall
Consistency
0.00
0.67
0.67
0.67
0.67
0.67
0.67
1.00
0.33
0.33
0.00
0.33
0.67
0.33
0.67
0.67
0.00
N/A
0.67
N/A
N/A
0.67
0.67
0.52
∗ Survey
respondents were asked to state what they believed were
the top three threats (stated threats) without evaluating them by the
five measures of ecosystem vulnerability. See methods on how
nonidentical terms for threats were compared. N/A indicates either
there were no survey respondents or no respondent indicated the
top three threats.
our approach for conducting comparisons across threats
and ecosystems, and point out important gaps in knowledge and areas for future research.
Understanding the ways in which particular threats affect ecosystems (Table 4) can aid in prioritization of the
most important or most manageable threats. Some threats
act at very large scales (e.g., climate change) or have
large functional impacts (e.g., increased sedimentation),
whereas ecosystems are generally much less resistant to
and have longer recovery times from other threats (e.g.,
demersal destructive fishing). Addressing such threats
can be challenging but may provide more return on conservation or management investment. Ultimately, threat
ranking and prioritization will ultimately depend on the
scale at which decisions need to be made. Threats such as
climate change primarily need to be addressed at regional
to global spatial scales, whereas threats such as coastal
development require local to regional management. Our
approach can be easily modified to provide guidance at
different spatial scales and even for specific locations.
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Surprisingly, rocky reefs and hard-bottom shelf areas
were ranked as most threatened. Yet other ecosystems,
such as coral reefs and mangroves, are widely recognized
as being highly imperiled. There are at least two possible explanations for these results. First, we did not account for the global rarity of an ecosystem type or the
amount of the total ecosystem affected. Ecosystems with
lower average threat ranks may actually be more at risk
of local or global extinction than higher-ranked ecosystems. For example, the majority of the world’s mangroves
and coral reefs are threatened (Bryant et al. 1998; Valiela et al. 2001), whereas large regions of rocky reef and
hard-bottom shelf may be relatively unaffected by anthropogenic activities (even though more threats can affect
them). Mapping impacts spatially will provide this assessment, an effort we have undertaken elsewhere (B. S. H.
et al., unpublished data).
Second, threats almost certainly interact in a multiplicative rather than additive manner. For example, when
nutrient input coincides with overharvest of herbivores,
macroalgal blooms are enhanced in rocky intertidal and
coral reef ecosystems (e.g., Hughes 1994; Worm et al.
2002). Although many threats clearly interact in ways that
can amplify their consequences for ecosystems, the nature and magnitude of this synergism are unknown for
most threats and ecosystems. Consequently, we conservatively assumed threats are additive. We also ignored
potential linkages that could allow impacts to propagate
between ecosystems. For example, destruction of mangroves or seagrass beds could affect fauna on nearby
coral reefs that depend upon these nursery habitats (e.g.,
Mumby et al. 2004).
Although most of our results make intuitive sense, several emerge as surprising. Destructive fishing was scored
as a lesser threat than nondestructive fishing for both
demersal and artisanal fishing in many of the ecosystems (Table 1). This result likely emerged from many experts reporting that destructive fishing was not a threat
for the region(s) of their expertise, whereas nondestructive fishing was. When both threats existed within a region the experts generally ranked destructive fishing as
being much worse. A lower value for destructive artisanal fishing emerged globally, therefore, even though
it clearly is a higher impact threat than nondestructive
artisanal fishing where both occur. Another surprising result is that recreational fishing and coastal development
were considered the highest impacts in hard-shelf ecosystems, even though these activities primarily occur near
shore. This result is possibly explained by the broad depth
range of the hard-shelf ecosystem, which includes the
sublittoral zone to the continental shelf break (30–200
m depth). Activities that occur near shore have the potential to influence the shallower shelf but likely do not
affect deeper areas; this distinction is lost when depths
are pooled. Indeed, for some ecosystem types finer subdivisions may be needed. If improbable results persist after
Halpern et al.
further scrutiny, additional surveys or even experimental
studies could be conducted to refine the impact values for
that particular threat-ecosystem combination. In general,
it is wise to consider the results of this analysis as hypotheses about relative vulnerability that should be tested with
further research.
The global results of our study provide a valuable big
picture, but the relative importance of particular threats
depends in part on which threats are present at particular locations, the magnitude of the threats, and the specific attributes of the location. For example, areas with
greater local species and/or genetic diversity may have
greater resistance to some threats than less diverse areas
(e.g., Steneck et al. 2002; Hughes et al. 2003). Connectivity within and among ecosystems will affect the scale
and functional impact of a threat in a particular location,
both positively (via dispersal-mediated recovery) and negatively (via threat transport).
Because most management happens at regional or local scales, finer-scale threat assessment will probably be
most relevant to managers, and caution should therefore
be used when applying specific impact scores and threat
ranks from our global survey to regional management.
Nevertheless, for threats and ecosystems that are present
in a region, our global results provide reasonable estimates of the relative importance of threats. Future regional assessments could be directly compared with our
global results.
Error in the results may stem from small survey sample
sizes in some ecosystems or potential survey biases toward academic scientists. For example, experts from different backgrounds (e.g., academic and agency) may have
different perceptions of how threats affect ecosystems, a
possibility we are testing elsewhere (B.S.H., unpublished
data). Variance among responses was fairly high, even
for ecosystems with large survey sample sizes, a result
we attribute to four sources. First, valid differences in
perspectives and knowledge base exist. Second, regional
differences in ecosystem response to threats most likely
created differences in expert responses, although withinecosystem sample size was too small to test for such differences. Third, paucity of data on some threat-ecosystem
combinations forced experts to rely on intuition. Finally,
despite efforts to carefully explain each concept, misinterpretation of instructions may have led to respondent
error. Misinterpretation may be minimized through the
use of one-on-one interviews in which the interviewer
can explain terms and concepts in a consistent way, take
notes on the reasoning and evidence behind responses,
and proofread entries. Nevertheless, a survey similar to
ours conducted through interviews had the same mean
standard deviation (1.1) as our survey (K.A.S., unpublished data), which indicates that respondent error was
not necessarily larger in our Web-based survey relative to
the interview method.
Threats to Marine Ecosystems
13
The surprisingly large inconsistency between the lists
of top three threats derived from the survey versus the volunteered responses, both across all respondents and for
each individual expert, emphasizes the need for conducting quantitative and transparent threat analyses. Experts
may have a feeling about which threats are most serious,
but when asked to consider each possible threat systematically based on a suite of factors, a different picture may
emerge. Our approach allows one to examine why and
where these discrepancies emerge.
Our survey method is not an exercise in management
or conservation priority setting because different groups
have different goals (e.g., protect most threatened vs.
most pristine area). The strength of the approach is that
it can be used in almost any management or conservation priority-setting effort tasked with identifying key
threats or priority ecosystems. Our ecosystem perspective, however, may not be the most appropriate if species
are the focus of management. Results from species-based
approaches (Wilcove et al. 1998; Kappel 2005) show that
habitat degradation, pollution, invasive species, and overharvest (for marine species) are the greatest threats. This
difference is not surprising because loss of habitat, increased mortality rates, and increased competition (from
non-natives) should have greater impacts on populations
than on entire ecosystems.
Our results also provide important guidance on where
the greatest information gaps and research needs exist.
The threats and ecosystems with lowest certainty scores
are in clear need of more research. Illegal, unregulated,
and unreported (IUU) fishing, disease, and decreases in
sediment input had the lowest average certainty scores,
whereas direct human impact, coastal engineering and
development, and recreational and destructive commercial fishing had the greatest certainty scores. Not surprisingly, understudied soft-bottom ecosystems generally had
the lowest certainty scores, but it was surprising that kelp
forests also had among the lowest certainty scores. This
result may indicate that even for relatively well-studied
ecosystems, field studies have concentrated on a small
subset of possible threats, with large uncertainties remaining for many others. In particular, threats with high impacts (e.g., point and nonpoint inorganic pollution and
acidification due to climate change) and heavily affected
ecosystems (pelagic surface water, soft shelf, and mangroves) that have low certainty scores need more research
effort.
Several threats that have received broad attention for
being particularly bad for many marine ecosystems did
not emerge as the greatest threats in our results. Most
notably, species invasions are commonly cited as a major
threat to particular ecosystems (e.g., Mack et al. 2000),
yet they were ranked 14th in our study. Artisanal fishing
ranked 30th and 33rd (nondestructive and destructive,
respectively) even though it has a significant impact in
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14
Threats to Marine Ecosystems
a variety of ecosystems (e.g., Ruttenberg 2001; Hawkins
& Roberts 2004). These differences suggest a need for
further work to refine our understanding of these threats
or potentially that people’s impressions of these threats
differ from their actual relative impact on ecosystems.
There are multiple ways our threat analysis method and
results could be useful to managers and conservation organizations. First, ranking diverse threats and ecosystems
in a comparable way can help organizations prioritize
how to spend limited time and money. This is particularly true for organizations working on a global scale
and interested in choosing focal areas and/or threat abatement strategies, with the caution that the global results
are an average of responses from various regions with uneven representation in our survey. Regional organizations
would be best served by adopting our method and redoing the ranking process for the region. Second, survey
results allow for identification of the ecosystems that are
most and least difficult to manage (e.g., with the highest
or lowest number of threats). Conservation and management effort focused on the latter type of ecosystem (e.g.,
deep seamounts, beaches) may produce more substantial
return on an investment because those efforts can target
a few key threats, whereas efforts focused on the former
type of ecosystem will likely require greater investment
to produce similar results. Third, our inclusion of scale as
a vulnerability measure provides a method for assessing
the necessary spatial scale at which management needs
to act. It is encouraging that most threats act at fairly small
spatial scales, although the sources of some of these localized threats can be large (e.g., a large watershed that
drains into a small estuary) and their overall spatial distribution may be extensive.
Fourth, recovery time estimates can be used to set expectations for approximate response time of ecosystems
to management activities. Average recovery time from
nearly all of the threats we surveyed was <1 year, which
if accurate suggests that if threats are effectively mitigated, most ecosystems will respond relatively quickly.
Of course, exact recovery times depend on threat type,
magnitude, and extent and local and regional biological
and oceanographic conditions. There are clearly some
threats—such as those with ecosystem-scale impacts—
that will have longer recovery times than a year. In addition, recovery times were estimated by respondents for
single threats, but ecosystems face multiple, potentially
interacting threats, which will likely lead to more complicated, slower trajectories of recovery in the real world. Finally, functional impact vulnerability scores can help discriminate instances where single-species approaches are
sufficient from those where threats need to be addressed
at the level of species assemblages or whole ecosystems.
The generally high levels of functional impact support
the recent focus on ecosystem-based management, indicating that such holistic approaches are needed to address
threats across a majority of marine ecosystem types.
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Halpern et al.
The future will inevitably usher in new types of threats
and allow access to new empirical data or additional expert opinion. Because this method for evaluating how
threats affect marine ecosystems is transparent and replicable, this survey mechanism can be easily and quickly
updated to include new sources of information and refine
the results from this analysis. Our results provide global
guidance on how and where to act now, although local
and regional management plans could develop more exact and tailored strategies if this method were repeated
for the specific areas. Our aim is for resource managers
to use these results to help prioritize threat mitigation
and abatement efforts that will prove most productive in
meeting their particular goals.
Acknowledgments
This work was funded by and developed from a working group at the National Center for Ecological Analysis
and Synthesis. We thank E. Madin, C. Pyke, S. Andelman,
and the participants of our first workshop who helped
develop the initial structure for the threat survey. We
thank C. D’Agrosa, H. Fox, R. Fujita, D. Heineman, H. Lenihan, R. Myers, E. Sanderson, M. Smith, and R. Steneck for
their participation in the second workshop and advice
on refining the threat survey. We also thank S. Benison
and S. Walbridge for their help with survey development
and data management and four anonymous reviewers for
their helpful comments on earlier versions. Finally, we
graciously thank all of the experts who responded to our
survey.
Supplementary Material
Pairwise comparison results from analyses of variance
of threats across ecosystem type (Appendix S1) and of
ecosystems across threats (Appendix S2) are available
as part of the on-line article from http://www.blackwellsynergy.com/. The author is responsible for the content
and functionality of these materials. Queries (other than
absence of the material) should be directed to the corresponding author.
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